MCMCpack: Markov Chain Monte Carlo (MCMC) Package

Canonical link: https://rscholar.com/pkg/MCMCpack

Andrew D. Martin • Kevin M. Quinn • Jong Hee Park • Ghislain Vieilledent • Michael Malecki • Matthew Blackwell • Keith Poole • Craig Reed • Ben Goodrich • Qiushi Yu • Ross Ihaka • The R Development Core Team • The R Foundation • Pierre L'Ecuyer • Makoto Matsumoto • Takuji Nishimura • View description and downloads View dependencies GitHub project

2003 Published

119 Citations

16 Authors

76 Revisions

1.7-1 Version

GPL-3 License

Referenced by ⇅	Year
BSTZINB: Association Among Disease Counts and Socio-Environmental Factors (Version 2.0.0)	2024
SurrogateBMA: Flexible Evaluation of Surrogate Markers with Bayesian Model Averaging (Version 1.0)	2024
bmet: Bayesian Multigroup Equivalence Testing (Version 0.1.0)	2024
ezECM: Event Categorization Matrix Classification for Nuclear Detonations (Version 1.0.0)	2024
iClusterVB: Fast Integrative Clustering and Feature Selection for High Dimensional Data (Version 0.1.4)	2024
multilevelmediation: Utility Functions for Multilevel Mediation Analysis (Version 0.4.1)	2024
scorematchingad: Score Matching Estimation by Automatic Differentiation (Version 0.1.1)	2024
sectorgap: Consistent Economic Trend Cycle Decomposition (Version 0.1.0)	2024
telescope: Bayesian Mixtures with an Unknown Number of Components (Version 0.2-0)	2024
clickb: Web Data Analysis by Bayesian Mixture of Markov Models (Version 0.1)	2023
BCClong: Bayesian Consensus Clustering for Multiple Longitudinal Features (Version 1.0.3)	2023
Bayenet: Bayesian Quantile Elastic Net for Genetic Study (Version 0.2)	2023
BayesianFactorZoo: Bayesian Solutions for the Factor Zoo: We Just Ran Two Quadrillion Models (Version 0.0.0.3)	2023
Racmacs: Antigenic Cartography Macros (Version 1.2.9)	2023
StReg: Student's t Regression Models (Version 1.1)	2023
poolHelper: Simulates Pooled Sequencing Genetic Data (Version 1.1.0)	2023
prolsirm: Procrustes Matching for Latent Space Item Response Model (Version 0.1.0)	2023
spruce: Spatial Random Effects Clustering of Single Cell Data (Version 0.99.1)	2022
BayesDissolution: Bayesian Models for Dissolution Testing (Version 0.2.1)	2022
FAVAR: Bayesian Analysis of a FAVAR Model (Version 0.1.3)	2022
bartcs: Bayesian Additive Regression Trees for Confounder Selection (Version 1.2.2)	2022
bmstdr: Bayesian Modeling of Spatio-Temporal Data with R (Version 0.7.9)	2022
ccpsyc: Methods for Cross-Cultural Psychology (Version 0.2.6)	2022
fido: Bayesian Multinomial Logistic Normal Regression (Version 1.1.2)	2022
lsirm12pl: Latent Space Item Response Model (Version 1.3.4)	2022
multiocc: Fits Multivariate Spatio-Temporal Occupancy Model (Version 0.2.1)	2022
netcmc: Spatio-Network Generalised Linear Mixed Models for Areal Unit and Network Data (Version 1.0.2)	2022
riAFTBART: A Flexible Approach for Causal Inference with Multiple Treatments and Clustered Survival Outcomes (Version 0.3.3)	2022
BMRMM: An Implementation of the Bayesian Markov (Renewal) Mixed Models (Version 1.0.1)	2021
PICBayes: Bayesian Models for Partly Interval-Censored Data (Version 1.0)	2021
PRSPGx: Construct PGx PRS (Version 0.3.0)	2021
bgumbel: Bimodal Gumbel Distribution (Version 0.0.3)	2021
gJLS2: A Generalized Joint Location and Scale Framework for Association Testing (Version 0.2.0)	2021
midas2: Bayesian Platform Design with Subgroup Efficacy Exploration(MIDAS-2) (Version 1.1.0)	2021
quid: Bayesian Mixed Models for Qualitative Individual Differences (Version 0.0.1)	2021
BayesSPsurv: Bayesian Spatial Split Population Survival Model (Version 0.1.4)	2020
BMTAR: Bayesian Approach for MTAR Models with Missing Data (Version 0.1.1)	2020
ConsReg: Fits Regression & ARMA Models Subject to Constraints to the Coefficient (Version 0.1.0)	2020
NMADiagT: Network Meta-Analysis of Multiple Diagnostic Tests (Version 0.1.2)	2020
NVCSSL: Nonparametric Varying Coefficient Spike-and-Slab Lasso (Version 2.0)	2020
Rdta: Data Transforming Augmentation for Linear Mixed Models (Version 1.0.1)	2020
animalEKF: Extended Kalman Filters for Animal Movement (Version 1.2)	2020
bayesmove: Non-Parametric Bayesian Analyses of Animal Movement (Version 0.2.1)	2020
brxx: Bayesian Test Reliability Estimation (Version 0.1.2)	2020
factor.switching: Post-Processing MCMC Outputs of Bayesian Factor Analytic Models (Version 1.4)	2020
hdpGLM: Hierarchical Dirichlet Process Generalized Linear Models (Version 1.0.3)	2020
hmclearn: Fit Statistical Models Using Hamiltonian Monte Carlo (Version 0.0.5)	2020
ivdoctr: Ensures Mutually Consistent Beliefs When Using IVs (Version 1.0.1)	2020
lchemix: A Bayesian Multi-Dimensional Couple-Based Latent Risk Model (Version 0.1.0)	2020
maxcombo: The Group Sequential Max-Combo Test for Comparing Survival Curves (Version 1.0)	2020
mbsts: Multivariate Bayesian Structural Time Series (Version 3.0)	2020
mixAR: Mixture Autoregressive Models (Version 0.22.8)	2020
sorocs: A Bayesian Semiparametric Approach to Correlated ROC Surfaces (Version 0.1.0)	2020
BHAI: Estimate the Burden of Healthcare-Associated Infections (Version 0.99.2)	2019
BayesMFSurv: Bayesian Misclassified-Failure Survival Model (Version 0.1.0)	2019
BayesPostEst: Generate Postestimation Quantities for Bayesian MCMC Estimation (Version 0.3.2)	2019
HMMmlselect: Determine the Number of States in Hidden Markov Models via Marginal Likelihood (Version 0.1.6)	2019
Hmsc: Hierarchical Model of Species Communities (Version 3.0-13)	2019
bayesanova: Bayesian Inference in the Analysis of Variance via Markov Chain Monte Carlo in Gaussian Mixture Models (Version 1.6)	2019
bayest: Effect Size Targeted Bayesian Two-Sample t-Tests via Markov Chain Monte Carlo in Gaussian Mixture Models (Version 1.5)	2019
llbayesireg: The L-Logistic Bayesian Regression (Version 1.0.0)	2019
mHMMbayes: Multilevel Hidden Markov Models Using Bayesian Estimation (Version 1.1.0)	2019
qgg: Statistical Tools for Quantitative Genetic Analyses (Version 1.1.6)	2019
BayesESS: Determining Effective Sample Size (Version 0.1.19)	2018
DPtree: Dirichlet-Based Polya Tree (Version 1.0.1)	2018
MBSP: Multivariate Bayesian Model with Shrinkage Priors (Version 4.0)	2018
miWQS: Multiple Imputation Using Weighted Quantile Sum Regression (Version 0.4.4)	2018
twl: Two-Way Latent Structure Clustering Model (Version 1.0)	2018
Rlda: Bayesian LDA for Mixed-Membership Clustering Analysis (Version 0.2.6)	2017
NetworkChange: Bayesian Package for Network Changepoint Analysis (Version 0.8)	2017
SensMap: Sensory and Consumer Data Mapping (Version 0.7)	2017
bayesDP: Implementation of the Bayesian Discount Prior Approach for Clinical Trials (Version 1.3.7)	2017
bridgesampling: Bridge Sampling for Marginal Likelihoods and Bayes Factors (Version 1.1-2)	2017
emmeans: Estimated Marginal Means, aka Least-Squares Means (Version 1.10.7)	2017
greta: Simple and Scalable Statistical Modelling in R (Version 0.5.0)	2017
manet: Multiple Allocation Model for Actor-Event Networks (Version 2.0)	2017
noncomplyR: Bayesian Analysis of Randomized Experiments with Non-Compliance (Version 1.0)	2017
pCalibrate: Bayesian Calibrations of p-Values (Version 0.2-1)	2017
ssmsn: Scale-Shape Mixtures of Skew-Normal Distributions (Version 0.2.0)	2017
DMRMark: DMR Detection by Non-Homogeneous Hidden Markov Model from Methylation Array Data (Version 1.1.1)	2016
HKprocess: Hurst-Kolmogorov Process (Version 0.1-1)	2016
MBSGS: Multivariate Bayesian Sparse Group Selection with Spike and Slab (Version 1.1.0)	2016
MixSIAR: Bayesian Mixing Models in R (Version 3.1.12)	2016
MultiBD: Multivariate Birth-Death Processes (Version 0.2.0)	2016
PLMIX: Bayesian Analysis of Finite Mixtures of Plackett-Luce Models for Partial Rankings/Orderings (Version 2.1.1)	2016
SizeEstimation: Estimating the Sizes of Populations at Risk of HIV Infection from Multiple Data Sources Using a Bayesian Hierarchical Model (Version 1.1.1)	2016
mvst: Bayesian Inference for the Multivariate Skew-t Model (Version 1.1.1)	2016
optDesignSlopeInt: Optimal Designs for Estimating the Slope Divided by the Intercept (Version 1.1.1)	2016
robustsae: Robust Bayesian Small Area Estimation (Version 0.1.0)	2016
sizeMat: Estimate Size at Sexual Maturity (Version 1.1.2)	2016
bacr: Bayesian Adjustment for Confounding (Version 1.0.1)	2015
emIRT: EM Algorithms for Estimating Item Response Theory Models (Version 0.0.14)	2015
evolqg: Evolutionary Quantitative Genetics (Version 0.3-4)	2015
fdrDiscreteNull: False Discovery Rate Procedures Under Discrete and Heterogeneous Null Distributions (Version 1.4)	2015
fungible: Psychometric Functions from the Waller Lab (Version 2.4.4)	2015
sparsereg: Sparse Bayesian Models for Regression, Subgroup Analysis, and Panel Data (Version 1.2)	2015
CARBayesST: Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data (Version 4.0)	2014
PortRisk: Portfolio Risk Analysis (Version 1.1.0)	2014
anominate: Alpha-NOMINATE Ideal Point Estimator (Version 0.7)	2014
qmethod: Analysis of Subjective Perspectives Using Q Methodology (Version 1.8.4)	2014
uskewFactors: Model-Based Clustering via Mixtures of Unrestricted Skew-t Sactor Analyzer Models (Version 2.0)	2014
RSGHB: Functions for Hierarchical Bayesian Estimation: A Flexible Approach (Version 1.2.2)	2013
miscF: Miscellaneous Functions (Version 0.1-5)	2013
hierarchicalDS: Functions to Perform Hierarchical Analysis of Distance Sampling Data (Version 3.0)	2012
BayesLCA: Bayesian Latent Class Analysis (Version 1.9)	2012
CARBayes: Spatial Generalised Linear Mixed Models for Areal Unit Data (Version 6.1.1)	2012
adaptsmoFMRI: Adaptive Smoothing of FMRI Data (Version 1.2)	2012
DOBAD: Analysis of Discretely Observed Linear Birth-and-Death(-and-Immigration) Markov Chains (Version 1.0.6)	2011
popdemo: Demographic Modelling Using Projection Matrices (Version 1.3-1)	2011
spikeSlabGAM: Bayesian Variable Selection and Model Choice for Generalized Additive Mixed Models (Version 1.1-20)	2011
coarseDataTools: Analysis of Coarsely Observed Data (Version 0.6-6)	2010
PhViD: PharmacoVigilance Signal Detection (Version 1.0.8)	2009
BayesDA: Functions and Datasets for the book "Bayesian Data Analysis" (Version 2012.04-1)	2009
Bergm: Bayesian Exponential Random Graph Models (Version 5.0.7)	2009
MCMCglmm: MCMC Generalised Linear Mixed Models (Version 2.36)	2009
MCPAN: Multiple Comparisons Using Normal Approximation (Version 1.1-21)	2008
frontier: Stochastic Frontier Analysis (Version 1.1-8)	2008
dyn: Time Series Regression (Version 0.2-9.6)	2005
pscl: Political Science Computational Laboratory (Version 1.5.9)	2005

RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN). Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.