MCMCpack: Markov Chain Monte Carlo (MCMC) Package

Canonical link: https://rscholar.com/pkg/MCMCpack

Andrew D. Martin • Kevin M. Quinn • Jong Hee Park • Ghislain Vieilledent • Michael Malecki • Matthew Blackwell • Keith Poole • Craig Reed • Ben Goodrich • Qiushi Yu • Ross Ihaka • The R Development Core Team • The R Foundation • Pierre L'Ecuyer • Makoto Matsumoto • Takuji Nishimura • View description and downloads View dependencies GitHub project

2003 Published

1.7-1 Version

0 Citations

16 Authors

Referenced by ⇅	Year
BayesSPsurv: Bayesian Spatial Split Population Survival Model (Version 0.1.4)	2020
DMRMark: DMR Detection by Non-Homogeneous Hidden Markov Model from Methylation Array Data (Version 1.1.1)	2016
DOBAD: Analysis of Discretely Observed Linear Birth-and-Death(-and-Immigration) Markov Chains (Version 1.0.6)	2011
hierarchicalDS: Functions to Perform Hierarchical Analysis of Distance Sampling Data (Version 3.0)	2012
Rlda: Bayesian LDA for Mixed-Membership Clustering Analysis (Version 0.2.6)	2017
spruce: Spatial Random Effects Clustering of Single Cell Data (Version 0.99.1)	2022
PhViD: PharmacoVigilance Signal Detection (Version 1.0.8)	2009
HKprocess: Hurst-Kolmogorov Process (Version 0.1-1)	2016
iClusterVB: Fast Integrative Clustering and Feature Selection for High Dimensional Data (Version 0.1.2)	2024
qgg: Statistical Tools for Quantitative Genetic Analyses (Version 1.1.2)	2019
qmethod: Analysis of Subjective Perspectives Using Q Methodology (Version 1.8.4)	2014
BCClong: Bayesian Consensus Clustering for Multiple Longitudinal Features (Version 1.0.3)	2023
BHAI: Estimate the Burden of Healthcare-Associated Infections (Version 0.99.2)	2019
BMRMM: An Implementation of the Bayesian Markov (Renewal) Mixed Models (Version 1.0.1)	2021
BMTAR: Bayesian Approach for MTAR Models with Missing Data (Version 0.1.1)	2020
BSTZINB: Association Among Disease Counts and Socio-Environmental Factors (Version 1.0.1)	2024
Bayenet: Bayesian Quantile Elastic Net for Genetic Study (Version 0.2)	2023
BayesDA: Functions and Datasets for the book "Bayesian Data Analysis" (Version 2012.04-1)	2009
BayesDissolution: Bayesian Models for Dissolution Testing (Version 0.2.1)	2022
BayesESS: Determining Effective Sample Size (Version 0.1.19)	2018
BayesLCA: Bayesian Latent Class Analysis (Version 1.9)	2012
BayesMFSurv: Bayesian Misclassified-Failure Survival Model (Version 0.1.0)	2019
BayesPostEst: Generate Postestimation Quantities for Bayesian MCMC Estimation (Version 0.3.2)	2019
BayesianFactorZoo: Bayesian Solutions for the Factor Zoo: We Just Ran Two Quadrillion Models (Version 0.0.0.3)	2023
Bergm: Bayesian Exponential Random Graph Models (Version 5.0.7)	2009
CARBayes: Spatial Generalised Linear Mixed Models for Areal Unit Data (Version 6.1.1)	2012
CARBayesST: Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data (Version 4.0)	2014
ConsReg: Fits Regression & ARMA Models Subject to Constraints to the Coefficient (Version 0.1.0)	2020
DPtree: Dirichlet-Based Polya Tree (Version 1.0.1)	2018
FAVAR: Bayesian Analysis of a FAVAR Model (Version 0.1.3)	2022
HMMmlselect: Determine the Number of States in Hidden Markov Models via Marginal Likelihood (Version 0.1.6)	2019
Hmsc: Hierarchical Model of Species Communities (Version 3.0-13)	2019
MBSGS: Multivariate Bayesian Sparse Group Selection with Spike and Slab (Version 1.1.0)	2016
MBSP: Multivariate Bayesian Model with Shrinkage Priors (Version 4.0)	2018
MCMCglmm: MCMC Generalised Linear Mixed Models (Version 2.36)	2009
MCPAN: Multiple Comparisons Using Normal Approximation (Version 1.1-21)	2008
MixSIAR: Bayesian Mixing Models in R (Version 3.1.12)	2016
MultiBD: Multivariate Birth-Death Processes (Version 0.2.0)	2016
NMADiagT: Network Meta-Analysis of Multiple Diagnostic Tests (Version 0.1.2)	2020
NVCSSL: Nonparametric Varying Coefficient Spike-and-Slab Lasso (Version 2.0)	2020
NetworkChange: Bayesian Package for Network Changepoint Analysis (Version 0.8)	2017
PICBayes: Bayesian Models for Partly Interval-Censored Data (Version 1.0)	2021
PLMIX: Bayesian Analysis of Finite Mixtures of Plackett-Luce Models for Partial Rankings/Orderings (Version 2.1.1)	2016
PRSPGx: Construct PGx PRS (Version 0.3.0)	2021
PortRisk: Portfolio Risk Analysis (Version 1.1.0)	2014
RSGHB: Functions for Hierarchical Bayesian Estimation: A Flexible Approach (Version 1.2.2)	2013
Racmacs: Antigenic Cartography Macros (Version 1.2.9)	2023
Rdta: Data Transforming Augmentation for Linear Mixed Models (Version 1.0.1)	2020
SensMap: Sensory and Consumer Data Mapping (Version 0.7)	2017
SizeEstimation: Estimating the Sizes of Populations at Risk of HIV Infection from Multiple Data Sources Using a Bayesian Hierarchical Model (Version 1.1.1)	2016
StReg: Student's t Regression Models (Version 1.1)	2023
SurrogateBMA: Flexible Evaluation of Surrogate Markers with Bayesian Model Averaging (Version 1.0)	2024
adaptsmoFMRI: Adaptive Smoothing of FMRI Data (Version 1.2)	2012
animalEKF: Extended Kalman Filters for Animal Movement (Version 1.2)	2020
bacr: Bayesian Adjustment for Confounding (Version 1.0.1)	2015
bartcs: Bayesian Additive Regression Trees for Confounder Selection (Version 1.2.2)	2022
bayesDP: Implementation of the Bayesian Discount Prior Approach for Clinical Trials (Version 1.3.6)	2017
bayesanova: Bayesian Inference in the Analysis of Variance via Markov Chain Monte Carlo in Gaussian Mixture Models (Version 1.6)	2019
bayesmove: Non-Parametric Bayesian Analyses of Animal Movement (Version 0.2.1)	2020
bayest: Effect Size Targeted Bayesian Two-Sample t-Tests via Markov Chain Monte Carlo in Gaussian Mixture Models (Version 1.5)	2019
bgumbel: Bimodal Gumbel Distribution (Version 0.0.3)	2021
bmet: Bayesian Multigroup Equivalence Testing (Version 0.1.0)	2024
bmstdr: Bayesian Modeling of Spatio-Temporal Data with R (Version 0.7.9)	2022
bridgesampling: Bridge Sampling for Marginal Likelihoods and Bayes Factors (Version 1.1-2)	2017
brxx: Bayesian Test Reliability Estimation (Version 0.1.2)	2020
ccpsyc: Methods for Cross-Cultural Psychology (Version 0.2.6)	2022
clickb: Web Data Analysis by Bayesian Mixture of Markov Models (Version 0.1)	2023
coarseDataTools: Analysis of Coarsely Observed Data (Version 0.6-6)	2010
dyn: Time Series Regression (Version 0.2-9.6)	2005
emIRT: EM Algorithms for Estimating Item Response Theory Models (Version 0.0.14)	2015
emmeans: Estimated Marginal Means, aka Least-Squares Means (Version 1.10.5)	2017
evolqg: Evolutionary Quantitative Genetics (Version 0.3-4)	2015
ezECM: Event Categorization Matrix Classification for Nuclear Detonations (Version 1.0.0)	2024
factor.switching: Post-Processing MCMC Outputs of Bayesian Factor Analytic Models (Version 1.4)	2020
fdrDiscreteNull: False Discovery Rate Procedures Under Discrete and Heterogeneous Null Distributions (Version 1.4)	2015
fido: Bayesian Multinomial Logistic Normal Regression (Version 1.1.1)	2022
frontier: Stochastic Frontier Analysis (Version 1.1-8)	2008
fungible: Psychometric Functions from the Waller Lab (Version 2.4.4)	2015
gJLS2: A Generalized Joint Location and Scale Framework for Association Testing (Version 0.2.0)	2021
greta: Simple and Scalable Statistical Modelling in R (Version 0.4.5)	2017
hdpGLM: Hierarchical Dirichlet Process Generalized Linear Models (Version 1.0.3)	2020
hmclearn: Fit Statistical Models Using Hamiltonian Monte Carlo (Version 0.0.5)	2020
ivdoctr: Ensures Mutually Consistent Beliefs When Using IVs (Version 1.0.1)	2020
lchemix: A Bayesian Multi-Dimensional Couple-Based Latent Risk Model (Version 0.1.0)	2020
llbayesireg: The L-Logistic Bayesian Regression (Version 1.0.0)	2019
lsirm12pl: Latent Space Item Response Model (Version 1.3.3)	2022
mHMMbayes: Multilevel Hidden Markov Models Using Bayesian Estimation (Version 1.1.0)	2019
manet: Multiple Allocation Model for Actor-Event Networks (Version 2.0)	2017
maxcombo: The Group Sequential Max-Combo Test for Comparing Survival Curves (Version 1.0)	2020
mbsts: Multivariate Bayesian Structural Time Series (Version 3.0)	2020
miWQS: Multiple Imputation Using Weighted Quantile Sum Regression (Version 0.4.4)	2018
midas2: Bayesian Platform Design with Subgroup Efficacy Exploration(MIDAS-2) (Version 1.1.0)	2021
miscF: Miscellaneous Functions (Version 0.1-5)	2013
mixAR: Mixture Autoregressive Models (Version 0.22.8)	2020
multilevelmediation: Utility Functions for Multilevel Mediation Analysis (Version 0.3.1)	2024
multiocc: Fits Multivariate Spatio-Temporal Occupancy Model (Version 0.2.1)	2022
mvst: Bayesian Inference for the Multivariate Skew-t Model (Version 1.1.1)	2016
netcmc: Spatio-Network Generalised Linear Mixed Models for Areal Unit and Network Data (Version 1.0.2)	2022
noncomplyR: Bayesian Analysis of Randomized Experiments with Non-Compliance (Version 1.0)	2017
optDesignSlopeInt: Optimal Designs for Estimating the Slope Divided by the Intercept (Version 1.1.1)	2016
pCalibrate: Bayesian Calibrations of p-Values (Version 0.2-1)	2017
poolHelper: Simulates Pooled Sequencing Genetic Data (Version 1.1.0)	2023
popdemo: Demographic Modelling Using Projection Matrices (Version 1.3-1)	2011
prolsirm: Procrustes Matching for Latent Space Item Response Model (Version 0.1.0)	2023
pscl: Political Science Computational Laboratory (Version 1.5.9)	2005
quid: Bayesian Mixed Models for Qualitative Individual Differences (Version 0.0.1)	2021
riAFTBART: A Flexible Approach for Causal Inference with Multiple Treatments and Clustered Survival Outcomes (Version 0.3.3)	2022
robustsae: Robust Bayesian Small Area Estimation (Version 0.1.0)	2016
scorematchingad: Score Matching Estimation by Automatic Differentiation (Version 0.0.67)	2024
sectorgap: Consistent Economic Trend Cycle Decomposition (Version 0.1.0)	2024
sizeMat: Estimate Size at Sexual Maturity (Version 1.1.2)	2016
sorocs: A Bayesian Semiparametric Approach to Correlated ROC Surfaces (Version 0.1.0)	2020
sparsereg: Sparse Bayesian Models for Regression, Subgroup Analysis, and Panel Data (Version 1.2)	2015
spikeSlabGAM: Bayesian Variable Selection and Model Choice for Generalized Additive Mixed Models (Version 1.1-20)	2011
ssmsn: Scale-Shape Mixtures of Skew-Normal Distributions (Version 0.2.0)	2017
telescope: Bayesian Mixtures with an Unknown Number of Components (Version 0.1-0)	2024
twl: Two-Way Latent Structure Clustering Model (Version 1.0)	2018
uskewFactors: Model-Based Clustering via Mixtures of Unrestricted Skew-t Sactor Analyzer Models (Version 2.0)	2014

RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN). Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.