MCMCpack: Markov Chain Monte Carlo (MCMC) Package

Canonical link: https://rscholar.com/pkg/MCMCpack

Andrew D. Martin • Kevin M. Quinn • Jong Hee Park • Ghislain Vieilledent • Michael Malecki • Matthew Blackwell • Keith Poole • Craig Reed • Ben Goodrich • Qiushi Yu • Ross Ihaka • The R Development Core Team • The R Foundation • Pierre L'Ecuyer • Makoto Matsumoto • Takuji Nishimura • View description and downloads View dependencies GitHub project

2003 Published

0 Citations

16 Authors

76 Revisions

1.7-1 Version

GPL-3 License

Referenced by ⇅	Year
BayesSPsurv: Bayesian Spatial Split Population Survival Model (Version 0.1.4)	2020
DMRMark: DMR Detection by Non-Homogeneous Hidden Markov Model from Methylation Array Data (Version 1.1.1)	2016
DOBAD: Analysis of Discretely Observed Linear Birth-and-Death(-and-Immigration) Markov Chains (Version 1.0.6)	2011
hierarchicalDS: Functions to Perform Hierarchical Analysis of Distance Sampling Data (Version 3.0)	2012
Rlda: Bayesian LDA for Mixed-Membership Clustering Analysis (Version 0.2.6)	2017
spruce: Spatial Random Effects Clustering of Single Cell Data (Version 0.99.1)	2022
PhViD: PharmacoVigilance Signal Detection (Version 1.0.8)	2009
HKprocess: Hurst-Kolmogorov Process (Version 0.1-1)	2016
clickb: Web Data Analysis by Bayesian Mixture of Markov Models (Version 0.1)	2023
BCClong: Bayesian Consensus Clustering for Multiple Longitudinal Features (Version 1.0.3)	2023
BHAI: Estimate the Burden of Healthcare-Associated Infections (Version 0.99.2)	2019
BMRMM: An Implementation of the Bayesian Markov (Renewal) Mixed Models (Version 1.0.1)	2021
BMTAR: Bayesian Approach for MTAR Models with Missing Data (Version 0.1.1)	2020
BSTZINB: Association Among Disease Counts and Socio-Environmental Factors (Version 2.0.0)	2024
Bayenet: Robust Bayesian Elastic Net (Version 0.3)	2023
BayesDA: Functions and Datasets for the book "Bayesian Data Analysis" (Version 2012.04-1)	2009
BayesDissolution: Bayesian Models for Dissolution Testing (Version 0.2.1)	2022
BayesESS: Determining Effective Sample Size (Version 0.1.19)	2018
BayesLCA: Bayesian Latent Class Analysis (Version 1.9)	2012
BayesMFSurv: Bayesian Misclassified-Failure Survival Model (Version 0.1.0)	2019
BayesPostEst: Generate Postestimation Quantities for Bayesian MCMC Estimation (Version 0.3.2)	2019
BayesianFactorZoo: Bayesian Solutions for the Factor Zoo: We Just Ran Two Quadrillion Models (Version 0.0.0.3)	2023
Bergm: Bayesian Exponential Random Graph Models (Version 5.0.7)	2009
CARBayes: Spatial Generalised Linear Mixed Models for Areal Unit Data (Version 6.1.1)	2012
CARBayesST: Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data (Version 4.0)	2014
ConsReg: Fits Regression & ARMA Models Subject to Constraints to the Coefficient (Version 0.1.0)	2020
DPtree: Dirichlet-Based Polya Tree (Version 1.0.1)	2018
FAVAR: Bayesian Analysis of a FAVAR Model (Version 0.1.3)	2022
HMMmlselect: Determine the Number of States in Hidden Markov Models via Marginal Likelihood (Version 0.1.6)	2019
Hmsc: Hierarchical Model of Species Communities (Version 3.0-13)	2019
MBSGS: Multivariate Bayesian Sparse Group Selection with Spike and Slab (Version 1.1.0)	2016
MBSP: Multivariate Bayesian Model with Shrinkage Priors (Version 4.0)	2018
MCMCglmm: MCMC Generalised Linear Mixed Models (Version 2.36)	2009
MCPAN: Multiple Comparisons Using Normal Approximation (Version 1.1-21)	2008
MixSIAR: Bayesian Mixing Models in R (Version 3.1.12)	2016
MultiBD: Multivariate Birth-Death Processes (Version 0.2.0)	2016
NMADiagT: Network Meta-Analysis of Multiple Diagnostic Tests (Version 0.1.2)	2020
NVCSSL: Nonparametric Varying Coefficient Spike-and-Slab Lasso (Version 2.0)	2020
NetworkChange: Bayesian Package for Network Changepoint Analysis (Version 0.8)	2017
PICBayes: Bayesian Models for Partly Interval-Censored Data (Version 1.0)	2021
PLMIX: Bayesian Analysis of Finite Mixtures of Plackett-Luce Models for Partial Rankings/Orderings (Version 2.1.1)	2016
PRSPGx: Construct PGx PRS (Version 0.3.0)	2021
PortRisk: Portfolio Risk Analysis (Version 1.1.0)	2014
RSGHB: Functions for Hierarchical Bayesian Estimation: A Flexible Approach (Version 1.2.2)	2013
Racmacs: Antigenic Cartography Macros (Version 1.2.9)	2023
Rdta: Data Transforming Augmentation for Linear Mixed Models (Version 1.0.1)	2020
SensMap: Sensory and Consumer Data Mapping (Version 0.7)	2017
SizeEstimation: Estimating the Sizes of Populations at Risk of HIV Infection from Multiple Data Sources Using a Bayesian Hierarchical Model (Version 1.1.1)	2016
StReg: Student's t Regression Models (Version 1.1)	2023
SurrogateBMA: Flexible Evaluation of Surrogate Markers with Bayesian Model Averaging (Version 1.0)	2024
adaptsmoFMRI: Adaptive Smoothing of FMRI Data (Version 1.2)	2012
animalEKF: Extended Kalman Filters for Animal Movement (Version 1.2)	2020
anominate: Alpha-NOMINATE Ideal Point Estimator (Version 0.7)	2014
bacr: Bayesian Adjustment for Confounding (Version 1.0.1)	2015
bartcs: Bayesian Additive Regression Trees for Confounder Selection (Version 1.3.0)	2022
bayesDP: Implementation of the Bayesian Discount Prior Approach for Clinical Trials (Version 1.3.7)	2017
bayesanova: Bayesian Inference in the Analysis of Variance via Markov Chain Monte Carlo in Gaussian Mixture Models (Version 1.6)	2019
bayesmove: Non-Parametric Bayesian Analyses of Animal Movement (Version 0.2.1)	2020
bayest: Effect Size Targeted Bayesian Two-Sample t-Tests via Markov Chain Monte Carlo in Gaussian Mixture Models (Version 1.5)	2019
bgumbel: Bimodal Gumbel Distribution (Version 0.0.3)	2021
bmet: Bayesian Multigroup Equivalence Testing (Version 0.1.0)	2024
bmstdr: Bayesian Modeling of Spatio-Temporal Data with R (Version 0.8.2)	2022
bridgesampling: Bridge Sampling for Marginal Likelihoods and Bayes Factors (Version 1.1-2)	2017
brxx: Bayesian Test Reliability Estimation (Version 0.1.2)	2020
ccpsyc: Methods for Cross-Cultural Psychology (Version 0.2.6)	2022
coarseDataTools: Analysis of Coarsely Observed Data (Version 0.7.2)	2010
dyn: Time Series Regression (Version 0.2-9.6)	2005
emIRT: EM Algorithms for Estimating Item Response Theory Models (Version 0.0.14)	2015
emmeans: Estimated Marginal Means, aka Least-Squares Means (Version 1.11.0)	2017
evolqg: Evolutionary Quantitative Genetics (Version 0.3-4)	2015
ezECM: Event Categorization Matrix Classification for Nuclear Detonations (Version 1.0.0)	2024
factor.switching: Post-Processing MCMC Outputs of Bayesian Factor Analytic Models (Version 1.4)	2020
fdrDiscreteNull: False Discovery Rate Procedures Under Discrete and Heterogeneous Null Distributions (Version 1.4)	2015
fido: Bayesian Multinomial Logistic Normal Regression (Version 1.1.2)	2022
frontier: Stochastic Frontier Analysis (Version 1.1-8)	2008
fungible: Psychometric Functions from the Waller Lab (Version 2.4.4)	2015
gJLS2: A Generalized Joint Location and Scale Framework for Association Testing (Version 0.2.0)	2021
greta: Simple and Scalable Statistical Modelling in R (Version 0.5.0)	2017
hdpGLM: Hierarchical Dirichlet Process Generalized Linear Models (Version 1.0.3)	2020
hmclearn: Fit Statistical Models Using Hamiltonian Monte Carlo (Version 0.0.5)	2020
iClusterVB: Fast Integrative Clustering and Feature Selection for High Dimensional Data (Version 0.1.4)	2024
ivdoctr: Ensures Mutually Consistent Beliefs When Using IVs (Version 1.0.1)	2020
lchemix: A Bayesian Multi-Dimensional Couple-Based Latent Risk Model (Version 0.1.0)	2020
llbayesireg: The L-Logistic Bayesian Regression (Version 1.0.0)	2019
lsirm12pl: Latent Space Item Response Model (Version 1.3.4)	2022
mHMMbayes: Multilevel Hidden Markov Models Using Bayesian Estimation (Version 1.1.0)	2019
manet: Multiple Allocation Model for Actor-Event Networks (Version 2.0)	2017
maxcombo: The Group Sequential Max-Combo Test for Comparing Survival Curves (Version 1.0)	2020
mbsts: Multivariate Bayesian Structural Time Series (Version 3.0)	2020
miWQS: Multiple Imputation Using Weighted Quantile Sum Regression (Version 0.4.4)	2018
midas2: Bayesian Platform Design with Subgroup Efficacy Exploration(MIDAS-2) (Version 1.1.0)	2021
miscF: Miscellaneous Functions (Version 0.1-5)	2013
mixAR: Mixture Autoregressive Models (Version 0.22.8)	2020
multilevelmediation: Utility Functions for Multilevel Mediation Analysis (Version 0.4.1)	2024
multiocc: Fits Multivariate Spatio-Temporal Occupancy Model (Version 0.2.1)	2022
mvst: Bayesian Inference for the Multivariate Skew-t Model (Version 1.1.1)	2016
netcmc: Spatio-Network Generalised Linear Mixed Models for Areal Unit and Network Data (Version 1.0.2)	2022
noncomplyR: Bayesian Analysis of Randomized Experiments with Non-Compliance (Version 1.0)	2017
optDesignSlopeInt: Optimal Designs for Estimating the Slope Divided by the Intercept (Version 1.1.1)	2016
pCalibrate: Bayesian Calibrations of p-Values (Version 0.2-1)	2017
poolHelper: Simulates Pooled Sequencing Genetic Data (Version 1.1.0)	2023
popdemo: Demographic Modelling Using Projection Matrices (Version 1.3-2)	2011
prolsirm: Procrustes Matching for Latent Space Item Response Model (Version 0.1.0)	2023
pscl: Political Science Computational Laboratory (Version 1.5.9)	2005
qgg: Statistical Tools for Quantitative Genetic Analyses (Version 1.1.6)	2019
qmethod: Analysis of Subjective Perspectives Using Q Methodology (Version 1.8.4)	2014
quid: Bayesian Mixed Models for Qualitative Individual Differences (Version 0.0.1)	2021
riAFTBART: A Flexible Approach for Causal Inference with Multiple Treatments and Clustered Survival Outcomes (Version 0.3.3)	2022
robustsae: Robust Bayesian Small Area Estimation (Version 0.1.0)	2016
scorematchingad: Score Matching Estimation by Automatic Differentiation (Version 0.1.1)	2024
sectorgap: Consistent Economic Trend Cycle Decomposition (Version 0.1.0)	2024
sizeMat: Estimate Size at Sexual Maturity (Version 1.1.2)	2016
sorocs: A Bayesian Semiparametric Approach to Correlated ROC Surfaces (Version 0.1.0)	2020
sparsereg: Sparse Bayesian Models for Regression, Subgroup Analysis, and Panel Data (Version 1.2)	2015
spikeSlabGAM: Bayesian Variable Selection and Model Choice for Generalized Additive Mixed Models (Version 1.1-20)	2011
ssmsn: Scale-Shape Mixtures of Skew-Normal Distributions (Version 0.2.0)	2017
telescope: Bayesian Mixtures with an Unknown Number of Components (Version 0.2-0)	2024
twl: Two-Way Latent Structure Clustering Model (Version 1.0)	2018
uskewFactors: Model-Based Clustering via Mixtures of Unrestricted Skew-t Sactor Analyzer Models (Version 2.0)	2014

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