Rfast: A Collection of Efficient and Extremely Fast R Functions

Canonical link: https://rscholar.com/pkg/Rfast

Manos Papadakis • Michail Tsagris • Marios Dimitriadis • Stefanos Fafalios • Ioannis Tsamardinos • Matteo Fasiolo • Giorgos Borboudakis • John Burkardt • Changliang Zou • Kleanthi Lakiotaki • Christina Chatzipantsiou • View description and downloads View dependencies GitHub project

2016 Published

2.1.0 Version

0 Citations

11 Authors

Referenced by ⇅	Year
aRchi: Quantitative Structural Model ("QSM") Treatment for Tree Architecture (Version 2.1.3)	2021
molnet: Predicting Differential Drug Response using Multi-Omics Networks (Version 0.1.0)	2021
ORdensity: Identification of Differentially Expressed Genes (Version 1.0)	2020
ProFound: Photometry Tools (Version 1.14.1)	2017
NonlinearRDD: Nonlinear Regression Discontinuity Design (Version 0.0.4)	2023
CCd: The Cauchy-Cacoullos (Discrete Cauchy) Distribution (Version 1.0)	2024
CICA: Clusterwise Independent Component Analysis (Version 1.1.1)	2021
CPC: Implementation of Cluster-Polarization Coefficient (Version 2.6.0)	2022
Compositional: Compositional Data Analysis (Version 7.1)	2016
CompositionalML: Machine Learning with Compositional Data (Version 1.0)	2024
CompositionalRF: Multivariate Random Forest with Compositional Responses (Version 1.0)	2024
CptNonPar: Nonparametric Change Point Detection for Multivariate Time Series (Version 0.2.1)	2023
Directional: A Collection of Functions for Directional Data Analysis (Version 6.9)	2015
DrDimont: Drug Response Prediction from Differential Multi-Omics Networks (Version 0.1.4)	2022
FRESA.CAD: Feature Selection Algorithms for Computer Aided Diagnosis (Version 3.4.8)	2014
GPCERF: Gaussian Processes for Estimating Causal Exposure Response Curves (Version 0.2.4)	2022
IMIFA: Infinite Mixtures of Infinite Factor Analysers and Related Models (Version 2.2.0)	2017
MLE: Maximum Likelihood Estimation of Various Univariate and Multivariate Distributions (Version 1.2)	2024
MN: Matrix Normal Distribution (Version 1.0)	2024
MVNBayesian: Bayesian Analysis Framework for MVN (Mixture) Distribution (Version 0.0.8-11)	2018
MXM: Feature Selection (Including Multiple Solutions) and Bayesian Networks (Version 1.5.5)	2014
MetSizeR: A Shiny App for Sample Size Estimation in Metabolomic Experiments (Version 2.0.0)	2013
NGBVS: Bayesian Variable Selection for SNP Data using Normal-Gamma (Version 0.3.0)	2019
NNS: Nonlinear Nonparametric Statistics (Version 10.9.3)	2016
NetFACS: Network Applications to Facial Communication Data (Version 0.5.0)	2021
NetSci: Calculates Basic Network Measures Commonly Used in Network Medicine (Version 1.0.1)	2021
OPI: Open Perimetry Interface (Version 3.0.2)	2012
PNAR: Poisson Network Autoregressive Models (Version 1.7)	2022
PRSPGx: Construct PGx PRS (Version 0.3.0)	2021
QUALYPSO: Partitioning Uncertainty Components of an Incomplete Ensemble of Climate Projections (Version 2.3)	2019
RAINBOWR: Genome-Wide Association Study with SNP-Set Methods (Version 0.1.35)	2019
RDM: Quantify Dependence using Rearranged Dependence Measures (Version 0.1.1)	2023
RankAggSIgFUR: Polynomially Bounded Rank Aggregation under Kemeny's Axiomatic Approach (Version 1.0.0)	2022
Rfast2: A Collection of Efficient and Extremely Fast R Functions II (Version 0.1.5.2)	2019
Rogue: Identify Rogue Taxa in Sets of Phylogenetic Trees (Version 2.1.6)	2021
Rtropical: Data Analysis Tools over Space of Phylogenetic Trees Using Tropical Geometry (Version 1.2.1)	2021
SMOTEWB: Imbalanced Resampling using SMOTE with Boosting (SMOTEWB) (Version 1.2.0)	2022
SelectBoost: A General Algorithm to Enhance the Performance of Variable Selection Methods in Correlated Datasets (Version 2.2.2)	2019
SmoothWin: Soft Windowing on Linear Regression (Version 3.0.0)	2017
Spectrum: Fast Adaptive Spectral Clustering for Single and Multi-View Data (Version 1.1)	2019
SteppedPower: Power Calculation for Stepped Wedge Designs (Version 0.3.5)	2021
TML: Tropical Geometry Tools for Machine Learning (Version 2.3.0)	2023
TSCI: Tools for Causal Inference with Possibly Invalid Instrumental Variables (Version 3.0.4)	2022
VoxR: Trees Geometry and Morphology from Unstructured TLS Data (Version 1.0.0)	2014
WRI: Wasserstein Regression and Inference (Version 0.2.0)	2020
adass: Adaptive Smoothing Spline (AdaSS) Estimator for the Function-on-Function Linear Regression (Version 1.0.1)	2021
autoMFA: Algorithms for Automatically Fitting MFA Models (Version 1.0.0)	2021
bivpois: Bivariate Poisson Distribution (Version 1.0)	2005
bltm: Bayesian Latent Threshold Modeling (Version 0.1.0)	2019
cauchypca: Robust Principal Component Analysis Using the Cauchy Distribution (Version 1.3)	2022
clusterMI: Cluster Analysis with Missing Values by Multiple Imputation (Version 1.2.2)	2024
cols: Constrained Ordinary Least Squares (Version 1.2)	2023
corrfuns: Correlation Coefficient Related Functions (Version 1.0)	2023
cpmr: Connectome Predictive Modelling in R (Version 0.1.0)	2024
cpss: Change-Point Detection by Sample-Splitting Methods (Version 0.0.3)	2020
dCovTS: Distance Covariance and Correlation for Time Series Analysis (Version 1.4)	2016
datanugget: Create, and Refine Data Nuggets (Version 1.3.1)	2020
dcorVS: Variable Selection Algorithms Using the Distance Correlation (Version 1.0)	2023
dcortools: Providing Fast and Flexible Functions for Distance Correlation Analysis (Version 0.1.6)	2021
deepMOU: Clustering of Short Texts by Mixture of Unigrams and Its Deep Extensions (Version 0.1.1)	2021
dyads: Dyadic Network Analysis (Version 1.2.1)	2017
epilogi: The 'epilogi' Variable Selection Algorithm for Continuous Data (Version 1.1)	2023
fastFMM: Fast Functional Mixed Models using Fast Univariate Inference (Version 0.3.0)	2023
fitlandr: Fit Vector Fields and Potential Landscapes from Intensive Longitudinal Data (Version 0.1.0)	2023
frscore: Functions for Calculating Fit-Robustness of CNA-Solutions (Version 0.4.1)	2021
fsn: Rosenthal's Fail Safe Number and Related Functions (Version 0.2)	2020
funcharts: Functional Control Charts (Version 1.5.0)	2021
gMOIP: Tools for 2D and 3D Plots of Single and Multi-Objective Linear/Integer Programming Models (Version 1.5.4)	2017
glmtoolbox: Set of Tools to Data Analysis using Generalized Linear Models (Version 0.1.12)	2021
gp: Maximum Likelihood Estimation of the Generalized Poisson Distribution (Version 1.1)	2023
handwriter: Handwriting Analysis in R (Version 3.2.1)	2021
highd2means: High-Dimensional Tests for Two Population Mean Vectors (Version 1.0)	2024
imbalanceDatRel: Relocated Data Oversampling for Imbalanced Data Classification (Version 0.1.5)	2023
irtQ: Unidimensional Item Response Theory Modeling (Version 0.2.1)	2023
jenga: Fast Extrapolation of Time Features using K-Nearest Neighbors (Version 1.3.0)	2021
kDGLM: Bayesian Analysis of Dynamic Generalized Linear Models (Version 1.2.0)	2024
lmap: Logistic Mapping (Version 0.1.2)	2022
mbr: Mass Balance Reconstruction (Version 0.0.1)	2021
metaGE: Meta-Analysis for Detecting Genotype x Environment Associations (Version 1.1.0)	2023
metaplus: Robust Meta-Analysis and Meta-Regression (Version 1.0-5)	2014
mfpp: 'Matrix-Based Flexible Project Planning' (Version 0.0.7)	2022
micd: Multiple Imputation in Causal Graph Discovery (Version 1.1.1)	2022
mixgb: Multiple Imputation Through 'XGBoost' (Version 1.0.2)	2022
mixpoissonreg: Mixed Poisson Regression for Overdispersed Count Data (Version 1.0.0)	2021
mlmts: Machine Learning Algorithms for Multivariate Time Series (Version 1.1.2)	2022
mlrCPO: Composable Preprocessing Operators and Pipelines for Machine Learning (Version 0.3.7-7)	2018
mrfse: Markov Random Field Structure Estimator (Version 0.4.2)	2019
mvcauchy: Multivariate Cauchy Distribution (Version 1.1)	2024
mvcor: Correlation Coefficients for Multivariate Data (Version 1.0)	2024
mvhtests: Multivariate Hypothesis Tests (Version 1.0)	2023
naive: Empirical Extrapolation of Time Feature Patterns (Version 1.2.3)	2022
nda: Generalized Network-Based Dimensionality Reduction and Analysis (Version 0.1.15)	2022
nebula: Negative Binomial Mixed Models Using Large-Sample Approximation for Differential Expression Analysis of ScRNA-Seq Data (Version 1.5.3)	2022
nestedcv: Nested Cross-Validation with 'glmnet' and 'caret' (Version 0.7.10)	2022
nlgm: Non Linear Growth Models (Version 1.0)	2022
obfuscatoR: Obfuscation Game Designs (Version 0.2.2)	2019
pchc: Bayesian Network Learning with the PCHC and Related Algorithms (Version 1.2)	2020
phylotypr: Classifying DNA Sequences to Taxonomic Groupings (Version 0.1.0)	2024
phylter: Detect and Remove Outliers in Phylogenomics Datasets (Version 0.9.11)	2023
ppsbm: Clustering in Longitudinal Networks (Version 0.2.2)	2018
randomLCA: Random Effects Latent Class Analysis (Version 1.1-4)	2008
rcccd: Class Cover Catch Digraph Classification (Version 0.3.2)	2023
regda: Regularised Discriminant Analysis (Version 1.0)	2023
rvMF: Fast Generation of von Mises-Fisher Distributed Pseudo-Random Vectors (Version 0.1.0)	2023
scoredec: S-Core Graph Decomposition (Version 0.1.1)	2024
segen: Sequence Generalization Through Similarity Network (Version 1.1.0)	2022
sensobol: Computation of Variance-Based Sensitivity Indices (Version 1.1.5)	2019
sgsR: Structurally Guided Sampling (Version 1.4.5)	2022
shinyExprPortal: A Configurable 'shiny' Portal for Sharing Analysis of Molecular Expression Data (Version 1.2.1)	2023
simDAG: Simulate Data from a DAG and Associated Node Information (Version 0.2.0)	2023
skedastic: Handling Heteroskedasticity in the Linear Regression Model (Version 2.0.2)	2020
smartsnp: Fast Multivariate Analyses of Big Genomic Data (Version 1.1.0)	2021
spaceNet: Latent Space Models for Multidimensional Networks (Version 1.2)	2018
sparseCov: Sparse Covariance Estimation Based on Thresholding (Version 0.0.1)	2024
speaq: Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment, Peak Based Processing, Quantitative Analysis and Visualizations (Version 2.7.0)	2015
success: Survival Control Charts Estimation Software (Version 1.1.0)	2022
susieR: Sum of Single Effects Linear Regression (Version 0.12.35)	2021
tame: Timing, Anatomical, Therapeutic and Chemical Based Medication Clustering (Version 0.0.1)	2023
tetragon: Automatic Sequence Prediction by Expansion of the Distance Matrix (Version 1.3.0)	2021
tidyclust: A Common API to Clustering (Version 0.2.3)	2022
truh: Two-Sample Nonparametric Testing Under Heterogeneity (Version 1.0.0)	2021
twl: Two-Way Latent Structure Clustering Model (Version 1.0)	2018
volcano3D: 3D Volcano Plots and Polar Plots for Three-Class Data (Version 2.0.9)	2020
wTO: Computing Weighted Topological Overlaps (wTO) & Consensus wTO Network (Version 2.1)	2017

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