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VGAM: Vector Generalized Linear and Additive Models

Thomas Yee • Cleve Moler •  View description and downloads View dependencies GitHub project

2006 Published
0 Citations
2 Authors
46 Revisions
1.1-14 Version
GPL-3 License
Referenced by ⇅ Year
errint: Builds Error Intervals (Version 1.0)

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ExomeDepth: Calls Copy Number Variants from Targeted Sequence Data (Version 1.1.16)

 		2022
misreport: Statistical Analysis of Misreporting on Sensitive Survey Questions (Version 0.1.1)

 		2016
SparseFactorAnalysis: Scaling Count and Binary Data with Sparse Factor Analysis (Version 1.0)

 		2015
stat.extend: Highest Density Regions and Other Functions of Distributions (Version 0.2.1)

 		2020
utilities: Data Utility Functions (Version 0.6.1)

 		2021
seqest: Sequential Method for Classification and Generalized Estimating Equations Problem (Version 1.0.1)

 		2020
EurosarcBayes: Bayesian Single Arm Sample Size Calculation Software (Version 1.1)

 		2015
marp: Model-Averaged Renewal Process (Version 0.1.0)

 		2022
AnaCoDa: Analysis of Codon Data under Stationarity using a Bayesian Framework (Version 0.1.4.4)

 		2018
CalcThemAll.PRM: Calculate Pesticide Risk Metric (PRM) Values from Multiple Pesticides...Calc Them All (Version 1.1.1)

 		2024
Cascade: Selection, Reverse-Engineering and Prediction in Cascade Networks (Version 2.3)

 		2019
ClusPred: Simultaneous Semi-Parametric Estimation of Clustering and Regression (Version 1.1.0)

 		2021
DIFtree: Item Focussed Trees for the Identification of Items in Differential Item Functioning (Version 3.1.6)

 		2015
DPBBM: Dirichlet Process Beta-Binomial Mixture (Version 0.2.5)

 		2016
EpiForsk: Code Sharing at the Department of Epidemiology Research at Statens Serum Institut (Version 0.2.0)

 		2023
EquiTrends: Equivalence Testing for Pre-Trends in Difference-in-Differences Designs (Version 1.0.0)

 		2024
GeoModels: Procedures for Gaussian and Non Gaussian Geostatistical (Large) Data Analysis (Version 2.2.2)

 		2022
PAsso: Assessing the Partial Association Between Ordinal Variables (Version 0.1.10)

 		2020
Patterns: Deciphering Biological Networks with Patterned Heterogeneous Measurements (Version 1.7)

 		2019
SimCorrMix: Simulation of Correlated Data with Multiple Variable Types Including Continuous and Count Mixture Distributions (Version 0.1.1)

 		2018
TempStable: A Collection of Methods to Estimate Parameters of Different Tempered Stable Distributions (Version 0.2.2)

 		2023
ZINAR1: Simulates ZINAR(1) Model and Estimates Its Parameters Under Frequentist Approach (Version 0.1.0)

 		2022
assessor: Assessment Tools for Regression Models with Discrete and Semicontinuous Outcomes (Version 1.1.1)

 		2024
calibmsm: Calibration Plots for the Transition Probabilities from Multistate Models (Version 1.1.3)

 		2023
casebase: Fitting Flexible Smooth-in-Time Hazards and Risk Functions via Logistic and Multinomial Regression (Version 0.10.6)

 		2017
collin: Visualization the Effects of Collinearity in Distributed Lag Models and Other Linear Models (Version 0.0.4)

 		2021
corncob: Count Regression for Correlated Observations with the Beta-Binomial (Version 0.4.2)

 		2021
crov: Constrained Regression Model for an Ordinal Response and Ordinal Predictors (Version 0.3.0)

 		2018
eoa3: Wildlife Mortality Estimator for Low Fatality Rates and Imperfect Detection (Version 1.0.0.2)

 		2023
flowml: A Backend for a 'nextflow' Pipeline that Performs Machine-Learning-Based Modeling of Biomedical Data (Version 0.1.3)

 		2023
ggeffects: Create Tidy Data Frames of Marginal Effects for 'ggplot' from Model Outputs (Version 2.3.2)

 		2017
giniVarCI: Gini Indices, Variances and Confidence Intervals for Finite and Infinite Populations (Version 0.0.1-3)

 		2024
glmxdiag: A Collection of Graphic Tools for GLM Diagnostics and some Extensions (Version 1.0.0)

 		2022
greta.censored: Censored Distributions for 'greta' (Version 0.1.0)

 		2024
isdals: Datasets for Introduction to Statistical Data Analysis for the Life Sciences (Version 3.0.1)

 		2010
kyotil: Utility Functions for Statistical Analysis Report Generation and Monte Carlo Studies (Version 2024.11-01)

 		2013
list: Statistical Methods for the Item Count Technique and List Experiment (Version 9.2.6)

 		2010
multgee: GEE Solver for Correlated Nominal or Ordinal Multinomial Responses (Version 1.9.0)

 		2012
orders: Sampling from k-th Order Statistics of New Families of Distributions (Version 0.1.8)

 		2019
papaja: Prepare American Psychological Association Journal Articles with R Markdown (Version 0.1.4)

 		2022
smcfcs: Multiple Imputation of Covariates by Substantive Model Compatible Fully Conditional Specification (Version 2.0.1)

 		2015
sparsereg: Sparse Bayesian Models for Regression, Subgroup Analysis, and Panel Data (Version 1.2)

 		2015
sssc: Same Species Sample Contamination Detection (Version 1.0.0)

 		2018
vanquish: Variant Quality Investigation Helper (Version 1.0.0)

 		2018
vecmatch: Generalized Propensity Score Estimation and Matching for Multiple Groups (Version 1.3.0)

 		2025
LLIC: Likelihood Criterion (LIC) Analysis for Laplace Regression Model (Version 3.0.0)

 		2024
rSHAPE: Simulated Haploid Asexual Population Evolution (Version 0.3.2)

 		2019
RIIM: Randomization-Based Inference Under Inexact Matching (Version 2.0.0)

 		2025
ClusPred Regression: (Version )

 		0
CompDist: Multisection Composite Distributions (Version 1.0)

 		2017
Countr: Flexible Univariate Count Models Based on Renewal Processes (Version 3.6.1)

 		2016
AICcmodavg: Model Selection and Multimodel Inference Based on (Q)AIC(c) (Version 2.3-4)

 		2009
AccSamplingDesign: Acceptance Sampling Plans Design (Version 0.0.7)

 		2025
AnaCoDa Framework: (Version )

 		0
AutoTransQF: A Novel Automatic Shifted Log Transformation (Version 0.1.3)

 		2023
BTIME: Bayesian Hierarchical Models for Single-Cell Protein Data (Version 1.0.0)

 		2025
Bayenet: Robust Bayesian Elastic Net (Version 0.3)

 		2023
BayesGOF: Bayesian Modeling via Frequentist Goodness-of-Fit (Version 5.2)

 		2017
BioPET: Biomarker Prognostic Enrichment Tool (Version 0.2.2)

 		2016
CORPlot: Cumulative Odds Ratio Plot (Version 1.0.2)

 		2025
Cascade Networks: (Version )

 		0
DescTools: Tools for Descriptive Statistics (Version 0.99.60)

 		2014
Dpit: Distribution Pitting (Version 1.0)

 		2017
ERPeq: Probabilistic Hazard Assessment (Version 0.1.0)

 		2023
EffectStars: Visualization of Categorical Response Models (Version 1.9-1)

 		2012
EffectStars2: Effect Stars (Version 0.1-3)

 		2016
EquiTrends Designs: (Version )

 		0
ExtDist: Extending the Range of Functions for Probability Distributions (Version 0.7-4)

 		2014
ExtendedLaplace: The Extended Laplace Distribution (Version 0.1.6)

 		2025
ForestGapR: Tropical Forest Canopy Gaps Analysis (Version 0.1.7)

 		2018
GJRM: Generalised Joint Regression Modelling (Version 0.2-6.8)

 		2017
GenHMM1d Models: (Version )

 		0
Hmisc: Harrell Miscellaneous (Version 5.2-5)

 		2003
JWileymisc: Miscellaneous Utilities and Functions (Version 1.4.4)

 		2016
MDMA: Mathijs Deen's Miscellaneous Auxiliaries (Version 2.0.0)

 		2024
MOM: Estimation and Testing of Hypothesis (Version 0.1.0)

 		2025
MigConnectivity: Estimate Migratory Connectivity for Migratory Animals (Version 0.5.0)

 		2024
ModTools: Building Regression and Classification Models (Version 0.9.13)

 		2021
MultivariateTrendAnalysis: Univariate and Multivariate Trend Testing (Version 0.1.3)

 		2025
NPFD: N-Power Fourier Deconvolution (Version 1.0.0)

 		2024
PAFit: Generative Mechanism Estimation in Temporal Complex Networks (Version 1.2.11)

 		2015
PH1XBAR: Phase I Shewhart X-Bar Chart (Version 0.11.3)

 		2021
PLreg: Power Logit Regression for Modeling Bounded Data (Version 0.4.1)

 		2022
PScr: Estimation for the Power Series Cure Rate Model (Version 1.1)

 		2022
Patterns Measurements: (Version )

 		0
PoSIAdjRSquared: Post-Selection Inference for Adjusted R Squared (Version 0.1.0)

 		2024
RelDists: Estimation for some Reliability Distributions (Version 1.0.0)

 		2022
SLTCA: Scalable and Robust Latent Trajectory Class Analysis (Version 0.1.0)

 		2020
Seurat: Tools for Single Cell Genomics (Version 5.4.0)

 		2017
ShinyItemAnalysis: Test and Item Analysis via Shiny (Version 1.5.5)

 		2016
SimMultiCorrData: Simulation of Correlated Data with Multiple Variable Types (Version 0.2.2)

 		2017
Sofi: Interfaz interactiva con fines didacticos (Version 0.16.4.8)

 		2015
SurvImpute: Multiple Imputation for Missing Covariates in Time-to-Event Data (Version 0.1.0)

 		2025
TBFmultinomial: TBF Methodology Extension for Multinomial Outcomes (Version 0.1.3)

 		2017
TSVC: Tree-Structured Modelling of Varying Coefficients (Version 1.7.2)

 		2018
VGAMdata: Data Supporting the 'VGAM' Package (Version 1.1-13)

 		2013
VGAMextra: Additions and Extensions of the 'VGAM' Package (Version 0.0-9)

 		2018
ZIHINAR1: Zero-Inflated and Hurdle INAR(1) Models (Version 0.1.0)

 		2025
adaptDiag: Bayesian Adaptive Designs for Diagnostic Trials (Version 0.1.0)

 		2021
aggreCAT: Mathematically Aggregating Expert Judgments (Version 1.0.0)

 		2025
bayesCureRateModel: Bayesian Cure Rate Modeling for Time-to-Event Data (Version 1.6)

 		2024
binspp: Bayesian Inference for Neyman-Scott Point Processes (Version 0.2.3)

 		2022
brglm2: Bias Reduction in Generalized Linear Models (Version 1.0.1)

 		2017
broom.helpers: Helpers for Model Coefficients Tibbles (Version 1.22.0)

 		2020
catdata: Categorical Data (Version 1.2.5)

 		2012
cg: Compare Groups, Analytically and Graphically (Version 1.0-4)

 		2010
childsds: Data and Methods Around Reference Values in Pediatrics (Version 0.9.11)

 		2014
copula: Multivariate Dependence with Copulas (Version 1.1-6)

 		2005
corncob Beta-Binomial: (Version )

 		0
crov Predictors: (Version )

 		0
cubfits: Codon Usage Bias Fits (Version 0.1-4)

 		2014
difNLR: DIF and DDF Detection by Non-Linear Regression Models (Version 1.5.2-2)

 		2016
discFA: Discrete Factor Analysis (Version 1.0.1)

 		2023
discSurv: Discrete Time Survival Analysis (Version 2.0.0)

 		2015
drord: Doubly-Robust Estimators for Ordinal Outcomes (Version 1.0.1)

 		2020
dwp: Density-Weighted Proportion (Version 1.1)

 		2022
ecostats: Code and Data Accompanying the Eco-Stats Text (Warton 2022) (Version 1.2.2)

 		2020
extraDistr: Additional Univariate and Multivariate Distributions (Version 1.10.0.2)

 		2016
familiar: End-to-End Automated Machine Learning and Model Evaluation (Version 1.5.0)

 		2022
fiberLD: Fiber Length Determination (Version 0.1-8)

 		2019
fitPS: Fit Zeta Distributions to Forensic Data (Version 1.0.1)

 		2022
fmx: Finite Mixture Parametrization (Version 0.1.3)

 		2024
gctsc: Modeling Count Time Series Data via Gaussian Copula Models (Version 0.1.3)

 		2025
gentransmuted: Estimation and Other Tools for Generalized Transmuted Models (Version 1.0)

 		2025
glm.predict: Predicted Values and Discrete Changes for Regression Models (Version 4.3-2)

 		2016
glmxdiag Extensions: (Version )

 		0
glsm: Saturated Model Log-Likelihood for Multinomial Outcomes (Version 0.0.0.6)

 		2025
gofcat: Goodness-of-Fit Measures for Categorical Response Models (Version 0.1.2)

 		2022
grandR: Comprehensive Analysis of Nucleotide Conversion Sequencing Data (Version 0.2.7)

 		2022
hnp: Half-Normal Plots with Simulation Envelopes (Version 1.2-7)

 		2014
ib: Bias Correction via Iterative Bootstrap (Version 0.2.1)

 		2020
iccCounts: Intraclass Correlation Coefficient for Count Data (Version 1.1.2)

 		2021
insight: Easy Access to Model Information for Various Model Objects (Version 1.4.4)

 		2019
jmdem: Fitting Joint Mean and Dispersion Effects Models (Version 1.0.1)

 		2018
l1ball: L1-Ball Prior for Sparse Regression (Version 0.1.0)

 		2020
lefko3: Historical and Ahistorical Population Projection Matrix Analysis (Version 6.6.0)

 		2020
list Experiment: (Version )

 		0
medflex: Flexible Mediation Analysis Using Natural Effect Models (Version 0.6-11)

 		2014
mediation: Causal Mediation Analysis (Version 4.5.1)

 		2009
mixvlmc: Variable Length Markov Chains with Covariates (Version 0.2.2)

 		2023
modeest: Mode Estimation (Version 2.4.0)

 		2007
multgee Responses: (Version )

 		0
mvord: Multivariate Ordinal Regression Models (Version 1.2.6)

 		2017
netmediate: Micro-Macro Analysis for Social Networks (Version 1.1.0)

 		2022
new.dist: Alternative Continuous and Discrete Distributions (Version 0.1.1)

 		2023
occupancy: Probability Functions for Occupancy Distributions (Version 1.2)

 		2021
ordDisp: Separating Location and Dispersion in Ordinal Regression Models (Version 2.1.2)

 		2016
orders Distributions: (Version )

 		0
ordinalNet: Penalized Ordinal Regression (Version 2.13)

 		2015
parameters: Processing of Model Parameters (Version 0.28.3)

 		2019
partDSA: Partitioning Using Deletion, Substitution, and Addition Moves (Version 0.9.14)

 		2013
performance: Assessment of Regression Models Performance (Version 0.15.3)

 		2019
ph2bye: Phase II Clinical Trial Design Using Bayesian Methods (Version 0.1.4)

 		2016
plot3logit: Ternary Plots for Trinomial Regression Models (Version 3.2.0)

 		2019
polymatching: A Matching Algorithm for Designs with Multiple Groups (Version 1.0.1)

 		2025
ppcc: Probability Plot Correlation Coefficient Test (Version 1.3)

 		2017
prediction: Tidy, Type-Safe 'prediction()' Methods (Version 0.3.18)

 		2016
qra: Quantal Response Analysis for Dose-Mortality Data (Version 0.2.8.1)

 		2021
refitME: Measurement Error Modelling using MCEM (Version 1.3.1)

 		2021
regclass: Tools for an Introductory Class in Regression and Modeling (Version 1.7)

 		2016
renz: R-Enzymology (Version 0.2.1)

 		2021
rms: Regression Modeling Strategies (Version 8.1-0)

 		2009
robmixglm: Robust Generalized Linear Models (GLM) using Mixtures (Version 1.2-5)

 		2018
robustrank: Robust Rank-Based Tests (Version 2024.1-28)

 		2016
rxSeq: Combined Total and Allele Specific Reads Sequencing Study (Version 0.99.3)

 		2016
sads: Maximum Likelihood Models for Species Abundance Distributions (Version 0.6.5)

 		2014
sageR: Applied Statistics for Economics and Management with R (Version 0.7.0)

 		2021
sampleSelection: Sample Selection Models (Version 1.2-14)

 		2008
scPOEM: Single-Cell Meta-Path Based Omic Embedding (Version 0.1.3)

 		2025
serp: Smooth Effects on Response Penalty for CLM (Version 0.2.5)

 		2021
singleRcapture: Single-Source Capture-Recapture Models (Version 1.0.0)

 		2023
skellam: Densities and Sampling for the Skellam Distribution (Version 0.2.4)

 		2012
ssdtools: Species Sensitivity Distributions (Version 2.5.0)

 		2018
sure: Surrogate Residuals for Ordinal and General Regression Models (Version 0.2.0)

 		2017
svyVGAM: Design-Based Inference in Vector Generalised Linear Models (Version 1.3)

 		2020
texreg: Conversion of R Regression Output to LaTeX or HTML Tables (Version 1.39.5)

 		2012
tidysynthesis: A Common API for Synthesizing Data (Version 0.1.2)

 		2025
tpn: Truncated Positive Normal Model and Extensions (Version 1.12)

 		2021
vcdExtra: 'vcd' Extensions and Additions (Version 0.9.0)

 		2010
wmwAUC: Wilcoxon-Mann-Whitney Test of No Group Discrimination (Version 0.2.0)

 		2025
wrMisc: Analyze Experimental High-Throughput (Omics) Data (Version 1.15.4)

 		2019
zipfextR: Zipf Extended Distributions (Version 1.0.2)

 		2018

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