bigmemory: Manage Massive Matrices with Shared Memory and Memory-Mapped Files

Canonical link: https://rscholar.com/pkg/bigmemory

Michael J. Kane • John W. Emerson • Peter Haverty • Charles Determan • View description and downloads View dependencies GitHub project

2008 Published

0 Citations

4 Authors

34 Revisions

4.6.4 Version

LGPL-3 License

Referenced by ⇅	Year
PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses (Version 2.7.5)	2012
ProFound: Photometry Tools (Version 1.14.1)	2017
s2dverification: Set of Common Tools for Forecast Verification (Version 2.10.3)	2014
MXM: Feature Selection (Including Multiple Solutions) and Bayesian Networks (Version 1.5.5)	2014
Bios2cor: From Biological Sequences and Simulations to Correlation Analysis (Version 2.2.2)	2017
EMJMCMC: Evolutionary Mode Jumping Markov Chain Monte Carlo Expert Toolbox (Version 1.5.0)	2024
MMD: Minimal Multilocus Distance (MMD) for Source Attribution and Loci Selection (Version 1.0.0)	2021
NMF: Algorithms and Framework for Nonnegative Matrix Factorization (NMF) (Version 0.28)	2009
bigalgebra: 'BLAS' and 'LAPACK' Routines for Native R Matrices and 'big.matrix' Objects (Version 3.0.0)	2014
bigtabulate: Table, Apply, and Split Functionality for Matrix and 'big.matrix' Objects (Version 1.1.9)	2010
fastglm: Fast and Stable Fitting of Generalized Linear Models using 'RcppEigen' (Version 0.0.4)	2019
glmmPen: High Dimensional Penalized Generalized Linear Mixed Models (pGLMM) (Version 1.5.4.8)	2022
hibayes: Individual-Level, Summary-Level and Single-Step Bayesian Regression Model (Version 3.1.0)	2021
iCAMP: Infer Community Assembly Mechanisms by Phylogenetic-Bin-Based Null Model Analysis (Version 1.5.12)	2020
mrMLM.GUI: Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for Genome-Wide Association Study with Graphical User Interface (Version 4.0.2)	2018
nat.nblast: NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron Similarity and Clustering (Version 1.6.8)	2014
overture: Tools for Writing MCMC (Version 0.4-0)	2019
pGRN: Single-Cell RNA Sequencing Pseudo-Time Based Gene Regulatory Network Inference (Version 0.3.5)	2023
rMVP: Memory-Efficient, Visualize-Enhanced, Parallel-Accelerated GWAS Tool (Version 1.4.5)	2019
slimrec: Sparse Linear Method to Predict Ratings and Top-N Recommendations (Version 0.1.0)	2017
geneSLOPE: Genome-Wide Association Study with SLOPE (Version 0.38.3)	2016
gesso: Hierarchical GxE Interactions in a Regularized Regression Model (Version 1.0.2)	2021
bigMap: Big Data Mapping (Version 2.3.1)	2019
bigPCAcpp: Principal Component Analysis for 'bigmemory' Matrices (Version 0.9.0)	2025
bigPLSR: Partial Least Squares Regression Models with Big Matrices (Version 0.7.2)	2025
bigPLScox: Partial Least Squares for Cox Models with Big Matrices (Version 0.8.1)	2025
bigSurvSGD: Big Survival Analysis Using Stochastic Gradient Descent (Version 0.0.1)	2020
biganalytics: Utilities for 'big.matrix' Objects from Package 'bigmemory' (Version 1.1.22)	2010
biglasso: Extending Lasso Model Fitting to Big Data (Version 1.6.1)	2016
BGData: A Suite of Packages for Analysis of Big Genomic Data (Version 2.4.1)	2017
Bios2cor Analysis: (Version )	0
EMJMCMC Toolbox: (Version )	0
KnockoffScreen: Whole-Genome Sequencing Data Analysis via Knockoff Statistics (Version 0.3.0)	2020
LinkedMatrix: Column-Linked and Row-Linked Matrices (Version 1.4.0)	2015
NMF (NMF): (Version )	0
NST: Normalized Stochasticity Ratio (Version 3.1.10)	2019
NetRep: Permutation Testing Network Module Preservation Across Datasets (Version 1.2.9)	2016
SLOPE: Sorted L1 Penalized Estimation (Version 1.2.0)	2015
SuperLearner: Super Learner Prediction (Version 2.0-40)	2011
TSEAL: Time Series Analysis Library (Version 0.1.3)	2024
bigmemory.sri: A Shared Resource Interface for Bigmemory Project Packages (Version 0.1.8)	2012
bigstatsr: Statistical Tools for Filebacked Big Matrices (Version 1.6.2)	2017
bigstep: Stepwise Selection for Large Data Sets (Version 1.1.2)	2016
bio3d: Biological Structure Analysis (Version 2.4-5)	2014
fastglm 'RcppEigen': (Version )	0
fusedMGM: Implementation of Fused MGM to Infer 2-Class Networks (Version 0.1.2)	2023
glmmPen (pGLMM): (Version )	0
kangar00: Kernel Approaches for Nonlinear Genetic Association Regression (Version 1.4.2)	2017
kofnGA: A Genetic Algorithm for Fixed-Size Subset Selection (Version 1.3)	2014
lmmpar: Parallel Linear Mixed Model (Version 0.1.0)	2017
matpow: Matrix Powers (Version 0.1.2)	2014
mbest: Moment-Based Estimation for Hierarchical Models (Version 0.6.1)	2014
oem: Orthogonalizing EM: Penalized Regression for Big Tall Data (Version 2.0.12)	2012
plmmr: Penalized Linear Mixed Models for Correlated Data (Version 4.2.2)	2024
rMVP Tool: (Version )	0
s2dv: Seasonal to Decadal Verification (Version 2.2.1)	2020
sephora: Statistical Estimation of Phenological Parameters (Version 0.1.31)	2024
sgd: Stochastic Gradient Descent for Scalable Estimation (Version 1.1.3)	2015
simer: Data Simulation for Life Science and Breeding (Version 1.0.0)	2022
simlandr: Simulation-Based Landscape Construction for Dynamical Systems (Version 0.4.0)	2021
slideimp: Numeric Matrices K-NN and PCA Imputation (Version 0.5.4)	2026
slimrec Recommendations: (Version )	0
startR: Automatically Retrieve Multidimensional Distributed Data Sets (Version 3.0.0)	2017
xrnet: Hierarchical Regularized Regression (Version 1.0.1)	2020

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