Referenced by ⇅
Year
agroclim : Climatic Indices for Agriculture (Version 0.3.0)
2020
ccdf : Distribution-Free Single-Cell Differential Expression Analysis (Version 1.1.4)
2021
dragon : Deep Time Redox Analysis of the Geobiology Ontology Network (Version 1.2.1)
2019
epcc : Simulating Populations of Ectotherms under Global Warming (Version 1.4.7)
2021
ggmotif : Extract and Visualize Motif Information from MEME Software (Version 0.2.1)
2021
healthcareai : Tools for Healthcare Machine Learning (Version 2.5.1)
2017
mdthemes : Markdown Themes for "ggplot2" (Version 0.1.0)
2020
moveVis : Movement Data Visualization (Version 0.10.5)
2017
nCov2019 : Exploring "COVID"-19 Statistics (Version 0.4.6)
2021
PALMO : Identify Intra and Inter-Donor Variations in Bulk or Single Cell
Longitudinal Dataset (Version 0.1.2)
2022
psrwe : PS-Integrated Methods for Incorporating Real-World Evidence in Clinical Studies (Version 3.2)
2020
rabhit : Inference Tool for Antibody Haplotype (Version 0.2.5)
2019
scImmuneGraph : Visualize the Basic Characteristics of Single-Cell Immune
Repertoire (Version 1.1.3)
2021
vanddraabe : Identification and Statistical Analysis of Conserved Waters Near
Proteins (Version 1.1.1)
2017
xQTLbiolinks : Integrative Analysis of Quantitative Trait Locus Data of "xQTL" (Version 1.6.2)
2022
yaps : Track Estimation using YAPS (Yet Another Positioning Solver) (Version 1.2.5)
2021
mcmcabn : Flexible Implementation of a Structural MCMC Sampler for DAGs (Version 0.6)
2019
viruslearner : Ensemble Learning for HIV-Related Metrics (Version 0.0.2)
2024
valse : Variable Selection with Mixture of Models (Version 0.1-0)
2021
MetaculR : Analyze Metaculus Predictions and Questions (Version 0.4.1)
2022
flowr : Streamlining Design and Deployment of Complex Workflows (Version 0.9.11)
2015
diffudist : Diffusion Distance for Complex Networks (Version 1.0.1)
2021
APIS : Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents (Version 2.0.8)
2019
APackOfTheClones : Visualization of Clonal Expansion for Single Cell Immune Profiles (Version 1.3.0)
2023
AcceptReject : Acceptance-Rejection Method for Generating Pseudo-Random Observations (Version 0.1.2)
2024
BeeGUTS : General Unified Threshold Model of Survival for Bees using Bayesian Inference (Version 1.5.0)
2022
CAESAR.Suite : CAESAR: a Cross-Technology and Cross-Resolution Framework for Spatial Omics Annotation (Version 0.3.0)
2024
CIDER : Meta-Clustering for scRNA-Seq Integration and Evaluation (Version 0.99.4)
2021
CausalGPS : Matching on Generalized Propensity Scores with Continuous Exposures (Version 0.5.1)
2021
CleaningValidation : Cleaning Validation Functions for Pharmaceutical Cleaning Process (Version 1.0)
2024
ClinicalUtilityRecal : Recalibration Methods for Improved Clinical Utility of Risk Scores (Version 0.1.0)
2020
CovidMutations : Mutation Analysis Toolkit for COVID-19 (Coronavirus Disease 2019) (Version 0.1.3)
2020
DIDmultiplegtDYN : Estimation in Difference-in-Difference Designs with Multiple Groups and Periods (Version 2.2.0)
2024
EQUALSTATS : Algorithm Driven Statistical Analysis for Researchers without Coding Skills (Version 0.5.1)
2024
EQUALrepeat : Algorithm Driven Time Series Analysis for Researchers without Coding Skills (Version 0.4.0)
2024
EVchargcost : Computes and Plot the Optimal Charging Strategy for Electric Vehicles (Version 0.1.0)
2024
EpiForsk : Code Sharing at the Department of Epidemiology Research at Statens Serum Institut (Version 0.2.0)
2023
GPCERF : Gaussian Processes for Estimating Causal Exposure Response Curves (Version 0.2.4)
2022
GeneSelectR : 'GeneSelectR' - Comprehensive Feature Selection Workflow for Bulk RNAseq Datasets (Version 1.0.1)
2023
HetSeq : Identifying Modulators of Cellular Responses Leveraging Intercellular Heterogeneity (Version 0.1.0)
2025
InteRD : The Integrated and Robust Deconvolution (Version 0.1.1)
2022
LAD : Derive Leaf Angle Distribution (LAD) from Measured Leaf Inclination Angles (Version 0.1.0)
2023
LightLogR : Process Data from Wearable Light Loggers and Optical Radiation Dosimeters (Version 0.10.0)
2024
LipidomicsR : Elegant Tools for Processing and Visualization of Lipidomics Data (Version 0.3.6)
2024
MLVSBM : A Stochastic Block Model for Multilevel Networks (Version 0.2.4)
2021
MOCHA : Modeling for Single-Cell Open Chromatin Analysis (Version 1.1.0)
2022
MultRegCMP : Bayesian Multivariate Conway-Maxwell-Poisson Regression Model for Correlated Count Data (Version 0.1.0)
2024
PCMBase : Simulation and Likelihood Calculation of Phylogenetic Comparative Models (Version 1.2.15)
2018
PRECAST : Embedding and Clustering with Alignment for Spatial Omics Datasets (Version 1.8)
2022
PhenotypeSimulator : Flexible Phenotype Simulation from Different Genetic and Noise Models (Version 0.3.4)
2017
PointedSDMs : Fit Models Derived from Point Processes to Species Distributions using 'inlabru' (Version 2.1.4)
2022
SCIntRuler : Guiding the Integration of Multiple Single-Cell RNA-Seq Datasets (Version 0.99.6)
2024
SeedMatchR : Find Matches to Canonical SiRNA Seeds in Genomic Features (Version 1.1.1)
2023
SpatialRDD : Conduct Multiple Types of Geographic Regression Discontinuity Designs (Version 0.1.0)
2023
SuperCell : Simplification of scRNA-Seq Data by Merging Together Similar Cells (Version 1.1)
2024
ThermalSampleR : Calculate Sample Sizes Required for Critical Thermal Limits Experiments (Version 0.1.2)
2022
WormTensor : A Clustering Method for Time-Series Whole-Brain Activity Data of 'C. elegans' (Version 0.1.2)
2022
adjustedCurves : Confounder-Adjusted Survival Curves and Cumulative Incidence Functions (Version 0.11.3)
2022
autohrf : Automated Generation of Data-Informed GLM Models in Task-Based fMRI Data Analysis (Version 1.1.3)
2022
bSi : Modeling and Computing Biogenic Silica ('bSi') from Inland and Pelagic Sediments (Version 1.0.0)
2024
bayefdr : Bayesian Estimation and Optimisation of Expected False Discovery Rate (Version 0.2.1)
2020
blockCV : Spatial and Environmental Blocking for K-Fold and LOO Cross-Validation (Version 3.2-0)
2020
braidReports : Visualize Combined Action Response Surfaces and Report BRAID Analyses (Version 1.0.5)
2016
bridger : Bridge Hand Generator with Criteria Selector (Version 0.1.0)
2021
chooseGCM : Selecting General Circulation Models for Species Distribution Modeling (Version 1.3)
2024
conserveR : Identifying Conservation Prioritization Methods Based on Data Availability (Version 1.0.4)
2021
expowo : An R Package for Mining Global Plant Diversity and Distribution Data (Version 3.0)
2023
fastTopics : Fast Algorithms for Fitting Topic Models and Non-Negative Matrix Factorizations to Count Data (Version 0.7-37)
2022
foodingraph : Food Network Inference and Visualization (Version 0.1.0)
2019
ggResidpanel : Panels and Interactive Versions of Diagnostic Plots using 'ggplot2' (Version 0.3.0)
2019
gggap : Streamlined Creation of Segments on the Y-Axis of 'ggplot2' Plots (Version 1.0.1)
2020
gompertztrunc : Conducting Maximum Likelihood Estimation with Truncated Mortality Data (Version 0.1.2)
2022
iClusterVB : Fast Integrative Clustering and Feature Selection for High Dimensional Data (Version 0.1.4)
2024
idiffomix : Integrated Differential Analysis of Multi Omics Data using a Joint Mixture Model (Version 1.0.0)
2025
imprinting : Calculate Birth Year-Specific Probabilities of Immune Imprinting to Influenza (Version 0.1.1)
2022
limorhyde2 : Quantify Rhythmicity and Differential Rhythmicity in Genomic Data (Version 0.1.1)
2022
memoria : Quantifying Ecological Memory in Palaeoecological Datasets and Other Long Time-Series (Version 1.0.0)
2019
metacoder : Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data (Version 0.3.8)
2016
nn2poly : Neural Network Weights Transformation into Polynomial Coefficients (Version 0.1.3)
2024
parafac4microbiome : Parallel Factor Analysis Modelling of Longitudinal Microbiome Data (Version 1.3.2)
2024
pcr : Analyzing Real-Time Quantitative PCR Data (Version 1.2.2)
2017
phateR : PHATE - Potential of Heat-Diffusion for Affinity-Based Transition Embedding (Version 1.0.7)
2018
plotthis : High-Level Plotting Built Upon 'ggplot2' and Other Plotting Packages (Version 0.9.3)
2024
psycModel : Integrated Toolkit for Psychological Analysis and Modeling in R (Version 0.5.0)
2021
qsort : Scoring Q-Sort Data (Version 0.2.3)
2018
ratlas : ATLAS Formatting Functions and Templates (Version 0.1.1)
2024
riAFTBART : A Flexible Approach for Causal Inference with Multiple Treatments and Clustered Survival Outcomes (Version 0.3.3)
2022
scCustomize : Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing (Version 3.2.4)
2022
schtools : Schloss Lab Tools for Reproducible Microbiome Research (Version 0.4.1)
2021
sigminer : Extract, Analyze and Visualize Mutational Signatures for Genomic Variations (Version 2.3.1)
2019
simaerep : Detect Clinical Trial Sites Over- or Under-Reporting Clinical Events (Version 1.0.0)
2023
singleCellHaystack : A Universal Differential Expression Prediction Tool for Single-Cell and Spatial Genomics Data (Version 1.0.3)
2020
smplot2 : Create Standalone and Composite Plots in 'ggplot2' for Publications (Version 0.2.5)
2024
snplinkage : Single Nucleotide Polymorphisms Linkage Disequilibrium Visualizations (Version 1.2.0)
2023
ssMousetrack : Bayesian State-Space Modeling of Mouse-Tracking Experiments via Stan (Version 1.1.7)
2018
stgam : Spatially and Temporally Varying Coefficient Models Using Generalized Additive Models (Version 1.1.0)
2024
survivalAnalysis : High-Level Interface for Survival Analysis and Associated Plots (Version 0.4.0)
2018
telefit : Estimation and Prediction for Remote Effects Spatial Process Models (Version 1.0.3)
2018
text : Analyses of Text using Transformers Models from HuggingFace, Natural Language Processing and Machine Learning (Version 1.8.0)
2020
tmod : Feature Set Enrichment Analysis for Metabolomics and Transcriptomics (Version 0.50.13)
2015
tsnet : Fitting, Comparing, and Visualizing Networks Based on Time Series Data (Version 0.2.0)
2024
tvthemes : TV Show Themes and Color Palettes for 'ggplot2' Graphics (Version 1.3.3)
2019
virtualPollen : Simulating Pollen Curves from Virtual Taxa with Different Life and Niche Traits (Version 1.0.2)
2019
andurinha : Make Spectroscopic Data Processing Easier (Version 0.0.2)
2020
cmcR : An Implementation of the 'Congruent Matching Cells' Method (Version 0.1.11)
2020
ggpie : Pie, Donut and Rose Pie Plots (Version 0.2.5)
2022
registr : Curve Registration for Exponential Family Functional Data (Version 2.2.1)
2020
cellpypes : Cell Type Pipes for Single-Cell RNA Sequencing Data (Version 0.3.0)
2022
vDiveR : Visualization of Viral Protein Sequence Diversity Dynamics (Version 2.1.0)
2023
isotracer : Isotopic Tracer Analysis Using MCMC (Version 1.1.8)
2021
DSSP : Implementation of the Direct Sampling Spatial Prior (Version 0.1.1)
2022
PhenotypeSimulator
Models : (Version )
0
ESTER : Efficient Sequential Testing with Evidence Ratios (Version 0.2.0)
2017
GPCERF
Curves : (Version )
0
CleaningValidation
Process : (Version )
0
ClinicalUtilityRecal
Scores : (Version )
0
ClusTorus : Prediction and Clustering on the Torus by Conformal Prediction (Version 0.2.2)
2021
CoSMoS : Complete Stochastic Modelling Solution (Version 2.1.1)
2019
CooccurrenceAffinity : Affinity in Co-Occurrence Data (Version 1.0.2)
2023
CovidMutations
2019) : (Version )
0
Coxmos : Cox MultiBlock Survival (Version 1.1.5)
2024
fMRIscrub : Scrubbing and Other Data Cleaning Routines for fMRI (Version 0.14.5)
2021
APIS
Parents : (Version )
0
APackOfTheClones
Profiles : (Version )
0
ASRgenomics : Complementary Genomic Functions (Version 1.1.5)
2022
AcceptReject
Observations : (Version )
0
AgroR : Experimental Statistics and Graphics for Agricultural Sciences (Version 1.3.7)
2021
BAQM : Babson Analytics and Quantitative Methods Tools (Version 0.1.4)
2026
BAwiR : Analysis of Basketball Data (Version 1.4.3)
2018
BCClong : Bayesian Consensus Clustering for Multiple Longitudinal Features (Version 1.0.3)
2023
BeeBDC : Occurrence Data Cleaning (Version 1.3.2)
2023
BiostatsUHNplus : Nested Data Summary, Adverse Events and REDCap (Version 1.0.3)
2023
BoneDensityMapping : Maps Bone Densities from CT Scans to Surface Models (Version 0.1.4)
2025
CIMTx : Causal Inference for Multiple Treatments with a Binary Outcome (Version 1.2.0)
2020
CNSigs : Analysis of Copy Number Signatures (Version 0.1.0)
2026
CRMetrics : Cell Ranger Output Filtering and Metrics Visualization (Version 0.3.2)
2022
CaseBasedReasoning : Case Based Reasoning (Version 0.3)
2018
CausCor : Calculate Correlations and Estimate Causality (Version 0.1.3)
2022
CausalGPS
Exposures : (Version )
0
DR.SC : Joint Dimension Reduction and Spatial Clustering (Version 3.7)
2021
DSFM : Distributed Skew Factor Model Estimation Methods (Version 1.0.1)
2025
DamageDetective : Detecting Damaged Cells in Single-Cell RNA Sequencing Data (Version 1.0.0)
2025
E2E
Modeling : (Version )
0
EQUALCompareImages : Comparison of Images for Researchers Without Coding Skills (Version 0.1.0)
2025
EVI : Epidemic Volatility Index as an Early-Warning Tool (Version 0.2.0-0)
2022
EVchargcost
Vehicles : (Version )
0
EcoEnsemble : A General Framework for Combining Ecosystem Models (Version 1.1.2)
2022
EstimateBreed : Estimation of Environmental Variables and Genetic Parameters (Version 1.0.2)
2025
FishDiveR : Classify Aquatic Animal Behaviours from Vertical Movement Data (Version 1.1.0)
2026
FitUltD : Fit Univariate Mixed and Usual Distributions (Version 3.1.0)
2019
GGoutlieR : Identify Individuals with Unusual Geo-Genetic Patterns (Version 1.0.2)
2023
GHRexplore : Exploratory Analysis of Temporal and Spatio-Temporal Health Data (Version 0.2.1)
2025
GHRmodel : Bayesian Hierarchical Modelling of Spatio-Temporal Health Data (Version 0.1.1)
2025
GLMMcosinor : Fit a Cosinor Model Using a Generalized Mixed Modeling Framework (Version 0.2.1)
2024
GPflexViz : Graphical Visualizations Related to Genomic Prediction (Version 1.0.0)
2025
GenoTriplo : Genotyping Triploids (or Diploids) from Luminescence Data (Version 1.1.3)
2023
GerminaR : Indices and Graphics for Assess Seed Germination Process (Version 2.1.6)
2016
INLAvaan : Approximate Bayesian Latent Variable Analysis (Version 0.2.3)
2026
IPV : Item Pool Visualization (Version 1.0.0)
2020
ITNr : Analysis of the International Trade Network (Version 0.7.0)
2018
KMunicate : KMunicate-Style Kaplan–Meier Plots (Version 0.2.5)
2020
LightLogR
Dosimeters : (Version )
0
LipidomicsR
Data : (Version )
0
LipinskiFilters : Computes and Visualize Lipinski's Parameters (Version 1.0.1)
2024
MetricGraph : Random Fields on Metric Graphs (Version 1.5.0)
2023
MultiATSM : Multicountry Term Structure of Interest Rates Models (Version 1.5.1)
2021
MultiGroupO : MultiGroup Method and Simulation Data Analysis (Version 0.4.0)
2022
MultiscaleDTM : Multi-Scale Geomorphometric Terrain Attributes (Version 1.0.1)
2022
PKNCA : Perform Pharmacokinetic Non-Compartmental Analysis (Version 0.12.1)
2015
PRECAST
Datasets : (Version )
0
PSsurvival : Propensity Score Methods for Survival Analysis (Version 0.2.0)
2025
PaRe : A Way to Perform Code Review or QA on Other Packages (Version 0.1.15)
2023
PieGlyph : Axis Invariant Scatter Pie Plots (Version 1.1.0)
2023
Platypus : Single-Cell Immune Repertoire and Gene Expression Analysis (Version 3.6.0)
2021
PopComm : Population-Level Cell-Cell Communication Analysis Tools (Version 1.0.0)
2025
RNAseqQC : Quality Control for RNA-Seq Data (Version 0.2.1)
2022
RRgeo : Species Distribution Modelling for Rare Species (Version 0.0.6)
2025
RaJIVE : Robust Angle Based Joint and Individual Variation Explained (Version 1.0)
2021
RavenR : Raven Hydrological Modelling Framework R Support and Analysis (Version 2.2.4)
2020
Rsearch : Processing and Analyzing Amplicon Sequence Data (Version 1.0.0)
2025
SCIBER : Single-Cell Integrator and Batch Effect Remover (Version 0.2.2)
2022
Seurat : Tools for Single Cell Genomics (Version 5.4.0)
2017
SkeletalVis : Exploration and Visualisation of Skeletal Transcriptomics Data (Version 0.1.2)
2025
Slick : Interactive Visualization of MSE Results (Version 1.0.0)
2025
SpatialRDD
Designs : (Version )
0
Spectran : Visual and Non-Visual Spectral Analysis of Light (Version 1.0.6)
2023
StepReg : Stepwise Regression Analysis (Version 1.6.2)
2017
StepRegShiny : Graphical User Interface for 'StepReg' (Version 1.6.1)
2025
SuperCell
Cells : (Version )
0
SynergyLMM : Statistical Framework for in Vivo Drug Combination Studies (Version 1.1.2)
2025
TITAN2 : Threshold Indicator Taxa Analysis (Version 2.4.4)
2015
TOSTER : Two One-Sided Tests (TOST) Equivalence Testing (Version 0.8.6)
2016
TailClassifier : Tail Classifier (Version 0.1.2)
2021
TcGSA : Time-Course Gene Set Analysis (Version 0.12.13)
2014
TestAnaAPP : A 'shiny' App for Test Analysis and Visualization (Version 1.1.2)
2023
ThermalSampleR
Experiments : (Version )
0
TooManyCellsR : An R Wrapper for 'TooManyCells' (Version 0.1.1.0)
2019
TreeDiagram : Tree Diagram (Version 0.1.1)
2020
UCSCXenaShiny : Interactive Analysis of UCSC Xena Data (Version 2.2.0)
2019
USE : Uniform Sampling of the Environmental Space (Version 0.1.6)
2025
UnalR : Una implementación de funciones de uso interno (Version 1.0.1)
2024
ViSe : Visualizing Sensitivity (Version 0.1.3)
2024
Virusparies : Visualize and Process Output from 'VirusHunterGatherer' (Version 1.1.0)
2024
VisitorCounts : Modeling and Forecasting Visitor Counts Using Social Media (Version 2.0.3)
2021
WASP : Wavelet System Prediction (Version 1.4.5)
2021
adjustedCurves
Functions : (Version )
0
afex : Analysis of Factorial Experiments (Version 1.5-1)
2012
anomaly : Detecting Anomalies in Data (Version 4.3.3)
2018
arcpullr : Pull Data from an 'ArcGIS REST' API (Version 0.3.2)
2021
bartMan : Create Visualisations for BART Models (Version 0.2.1)
2024
bayefdr
Rate : (Version )
0
bayes4psy : User Friendly Bayesian Data Analysis for Psychology (Version 1.2.13)
2019
bdc : Biodiversity Data Cleaning (Version 1.1.6)
2022
bigstatsr : Statistical Tools for Filebacked Big Matrices (Version 1.6.2)
2017
biogrowth : Modelling of Population Growth (Version 1.0.8)
2020
biometryassist : Functions to Assist Design and Analysis of Agronomic Experiments (Version 1.3.3)
2022
biscale : Tools and Palettes for Bivariate Thematic Mapping (Version 1.1.0)
2019
blockCV
Cross-Validation : (Version )
0
blockr.ggplot : Interactive 'ggplot2' Visualization Blocks (Version 0.1.0)
2025
bmm : Easy and Accessible Bayesian Measurement Models Using 'brms' (Version 1.2.0)
2024
bmstdr : Bayesian Modeling of Spatio-Temporal Data with R (Version 0.8.2)
2022
bp : Blood Pressure Analysis in R (Version 2.1.1)
2021
braidReports
Analyses : (Version )
0
bruceR : Broadly Useful Convenient and Efficient R Functions (Version 2025.11)
2021
carbonr : Calculate Carbon-Equivalent Emissions (Version 0.2.7)
2024
causact : Fast, Easy, and Visual Bayesian Inference (Version 0.6.0)
2020
causalnet : Directed Causal Network Enumeration and Simulation (Version 0.1.0)
2025
cdcatR : Cognitive Diagnostic Computerized Adaptive Testing (Version 1.0.6)
2020
chooseGCM
Modeling : (Version )
0
clustTMB : Spatio-Temporal Finite Mixture Model using 'TMB' (Version 0.1.0)
2024
colorBlindness : Safe Color Set for Color Blindness (Version 0.1.9)
2020
confidenceCurves : Frequentist Confidence Analysis for Clinical Trials (Version 0.2.0)
2025
conos : Clustering on Network of Samples (Version 1.5.2)
2021
conserveR
Availability : (Version )
0
cosinor2 : Extended Tools for Cosinor Analysis of Rhythms (Version 0.2.1)
2017
counterfactuals : Counterfactual Explanations (Version 1.0.0)
2023
covidmx : Descarga y analiza datos de COVID-19 en México (Version 0.7.7)
2022
crane : Supplements the 'gtsummary' Package for Pharmaceutical Reporting (Version 0.3.1)
2025
crops : Changepoints for a Range of Penalties (CROPS) (Version 1.0.3)
2021
cylcop : Circular-Linear Copulas with Angular Symmetry for Movement Data (Version 0.2.1)
2021
cytometree : Automated Cytometry Gating and Annotation (Version 2.0.6)
2017
dabestr : Data Analysis using Bootstrap-Coupled Estimation (Version 2025.3.15)
2018
daiquiri : Data Quality Reporting for Temporal Datasets (Version 1.2.1)
2022
dataquieR : Data Quality in Epidemiological Research (Version 2.8.7)
2021
dawaR : An API Wrapper for 'DAWA' - 'The Danish Address Web API' (Version 0.3.2)
2024
deconvolveR : Empirical Bayes Estimation Strategies (Version 1.2-1)
2016
decorrelate : Decorrelation Projection Scalable to High Dimensional Data (Version 0.1.6.4)
2025
deepSTRAPP : Test for Differences in Diversification Rates over Time (Version 1.0.0)
2026
denvax : Simple Dengue Test and Vaccinate Cost Thresholds (Version 0.1.2)
2019
designit : Blocking and Randomization for Experimental Design (Version 0.5.0)
2024
diceplot : High Dimensional Categorical Data Visualization (Version 0.2.2)
2024
didec : Directed Dependence Coefficient (Version 0.1.0)
2024
disaggregation : Disaggregation Modelling (Version 0.4.1)
2019
distributions3 : Probability Distributions as S3 Objects (Version 0.2.3)
2019
dittoViz : User Friendly Data Visualization (Version 1.0.6)
2024
doBy : Groupwise Statistics, LSmeans, Linear Estimates, Utilities (Version 4.7.1)
2006
dsb : Normalize & Denoise Droplet Single Cell Protein Data (CITE-Seq) (Version 2.0.1)
2021
ebnm : Solve the Empirical Bayes Normal Means Problem (Version 1.1-42)
2022
ec50estimator : An Automated Way to Estimate EC50 for Stratified Datasets (Version 0.1.0)
2020
ecode : Ordinary Differential Equation Systems in Ecology (Version 0.1.0)
2024
enmSdmX : Species Distribution Modeling and Ecological Niche Modeling (Version 1.2.12)
2022
epifitter : Analysis and Simulation of Plant Disease Progress Curves (Version 0.3.0)
2020
epos : Epilepsy Ontologies' Similarities (Version 1.2)
2018
estadistica : Fundamentos de estadÃstica descriptiva e inferencial (Version 1.2)
2021
estar : Ecological Stability Metrics (Version 1.0-1)
2025
esviz : Plotting Functions for Climate Science and Services (Version 0.0.1)
2026
ethnobotanyR : Calculate Quantitative Ethnobotany Indices (Version 0.1.9)
2019
evolqg : Evolutionary Quantitative Genetics (Version 0.3-6)
2015
evprof : Electric Vehicle Charging Sessions Profiling and Modelling (Version 1.2.0)
2024
explainer : Machine Learning Model Explainer (Version 1.0.2)
2023
fairadapt : Fair Data Adaptation with Quantile Preservation (Version 1.0.0)
2019
fastglmpca : Fast Algorithms for Generalized Principal Component Analysis (Version 0.1-108)
2024
faux : Simulation for Factorial Designs (Version 1.2.3)
2020
fcfdr : Flexible cFDR (Version 1.0.0)
2022
finalfit
Modelling : (Version )
0
findSVI : Calculate Social Vulnerability Index for Communities (Version 0.2.0)
2023
fkbma : Free Knot-Bayesian Model Averaging (Version 0.2.0)
2025
flashier : Empirical Bayes Matrix Factorization (Version 1.0.7)
2023
fmeffects : Model-Agnostic Interpretations with Forward Marginal Effects (Version 0.1.4)
2023
foreSIGHT : Systems Insights from Generation of Hydroclimatic Timeseries (Version 2.0.0)
2018
fractalforest : Simulate Fractal Trees and Forests (Version 1.0.1)
2025
funkyheatmap : Generating Funky Heatmaps for Data Frames (Version 0.5.2)
2022
gWQS : Generalized Weighted Quantile Sum Regression (Version 3.0.5)
2016
gap : Genetic Analysis Package (Version 1.6)
2004
gdverse : Analysis of Spatial Stratified Heterogeneity (Version 1.5.1)
2024
genekitr : Gene Analysis Toolkit (Version 1.2.8)
2021
geosimilarity : Geographically Optimal Similarity (Version 3.8)
2022
getspanel : General-to-Specific Modelling of Panel Data (Version 0.2.1)
2023
gg.gap : Define Segments in y-Axis for 'ggplot2' (Version 1.3)
2019
ggOceanMaps : Plot Data on Oceanographic Maps using 'ggplot2' (Version 2.2.0)
2021
ggResidpanel
'ggplot2' : (Version )
0
ggScatRidges : Scatter Plot Combined with Ridgelines in 'ggplot2' (Version 1.1.0)
2023
ggbreak : Set Axis Break for 'ggplot2' (Version 0.1.6)
2021
gggap
Plots : (Version )
0
ggpca : Publication-Ready PCA, t-SNE, and UMAP Plots (Version 0.1.3)
2024
ggplotify : Convert Plot to 'grob' or 'ggplot' Object (Version 0.1.3)
2018
ggpubr : 'ggplot2' Based Publication Ready Plots (Version 0.6.2)
2016
ggrcs : Draw Histograms and Restricted Cubic Splines (RCS) (Version 0.4.3)
2022
ggstackplot : Create Overlapping Stacked Plots (Version 0.4.1)
2025
ggtext : Improved Text Rendering Support for 'ggplot2' (Version 0.1.2)
2020
ghibli : Studio Ghibli Colour Palettes (Version 0.3.4)
2017
gofigR : Client for 'GoFigr.io' (Version 1.1.3)
2025
grainscape : Landscape Connectivity, Habitat, and Protected Area Networks (Version 0.5.0)
2019
grandR : Comprehensive Analysis of Nucleotide Conversion Sequencing Data (Version 0.2.7)
2022
gsDesign2 : Group Sequential Design with Non-Constant Effect (Version 1.1.7)
2023
gscramble : Simulating Admixed Genotypes Without Replacement (Version 1.0.1)
2024
harmony : Fast, Sensitive, and Accurate Integration of Single Cell Data (Version 1.2.4)
2021
hdflex : High-Dimensional Aggregate Density Forecasts (Version 0.3.2)
2023
healthyR.ts : The Time Series Modeling Companion to 'healthyR' (Version 0.3.2)
2021
healthyR : Hospital Data Analysis Workflow Tools (Version 0.2.2)
2020
himach : Find Routes for Supersonic Aircraft (Version 1.0.1)
2021
hmde : Hierarchical Methods for Differential Equations (Version 1.3.1)
2025
httk : High-Throughput Toxicokinetics (Version 2.7.4)
2015
hubEnsembles : Ensemble Methods for Combining Hub Model Outputs (Version 1.0.0)
2024
huito : Reproducible and Flexible Label Design (Version 0.2.6)
2021
iai : Interface to 'Interpretable AI' Modules (Version 1.10.2)
2019
ideanet : Integrating Data Exchange and Analysis for Networks ('ideanet') (Version 1.1.1)
2024
inTextSummaryTable : Creation of in-Text Summary Table (Version 3.3.5)
2021
incidence : Compute, Handle, Plot and Model Incidence of Dated Events (Version 1.7.6)
2016
insetplot : Inset Plots for Spatial Data Visualization (Version 1.3.0)
2025
interactions : Comprehensive, User-Friendly Toolkit for Probing Interactions (Version 1.2.0)
2019
inti : Tools and Statistical Procedures in Plant Science (Version 0.6.91)
2020
invivoPKfit : Fits Toxicokinetic Models to In Vivo PK Data Sets (Version 2.0.2)
2025
knfi : Analysis of Korean National Forest Inventory Database (Version 1.0.2)
2024
limorhyde2
Data : (Version )
0
locuszoomr : Gene Locus Plot with Gene Annotations (Version 0.3.8)
2023
longreadvqs : Viral Quasispecies Comparison from Long-Read Sequencing Data (Version 0.1.4)
2024
lvmisc : Veras Miscellaneous (Version 0.1.2)
2021
mbRes : Exploration of Multiple Biomarker Responses using Effect Size (Version 0.1.7)
2021
meme : Create Meme (Version 0.2.4)
2017
memery : Internet Memes for Data Analysts (Version 0.6.0)
2017
metapower : Power Analysis for Meta-Analysis (Version 0.2.2)
2020
microplot : Microplots (Sparklines) in 'LaTeX', 'Word', 'HTML', 'Excel' (Version 1.0-47)
2016
mitey : Serial Interval and Case Reproduction Number Estimation (Version 0.2.0)
2025
mlergm : Multilevel Exponential-Family Random Graph Models (Version 0.8.1)
2018
mlr : Machine Learning in R (Version 2.19.3)
2013
mlts : Multilevel Latent Time Series Models with 'R' and 'Stan' (Version 2.0.1)
2024
mmb : Arbitrary Dependency Mixed Multivariate Bayesian Models (Version 0.13.3)
2020
moderate.mediation : Causal Moderated Mediation Analysis (Version 0.0.12)
2023
multiScaleR : Methods for Optimizing Scales of Effect (Version 0.4.5)
2025
multifear : Multiverse Analyses for Conditioning Data (Version 0.1.5)
2021
multiverse : Create 'multiverse analysis' in R (Version 0.6.2)
2021
neutralitytestr : Test for a Neutral Evolutionary Model in Cancer Sequencing Data (Version 0.0.3)
2018
nn2poly
Coefficients : (Version )
0
nortsTest : Assessing Normality of Stationary Process (Version 1.1.3)
2020
nphRCT : Non-Proportional Hazards in Randomized Controlled Trials (Version 0.1.1)
2022
oolong : Create Validation Tests for Automated Content Analysis (Version 0.6.1)
2020
opitools : Analyzing the Opinions in a Big Text Document (Version 1.8.0)
2021
opticskxi : OPTICS K-Xi Density-Based Clustering (Version 1.2.1)
2019
overshiny : Interactive Overlays on 'shiny' Plots (Version 0.2.0)
2025
pRecipe : Precipitation R Recipes (Version 3.0.3)
2021
pam : Fast and Efficient Processing of PAM Data (Version 1.0.6)
2025
parafac4microbiome
Data : (Version )
0
pathviewr : Wrangle, Analyze, and Visualize Animal Movement Data (Version 1.1.8)
2021
patientProfilesVis : Visualization of Patient Profiles (Version 2.0.10)
2021
phylepic : Combined Visualisation of Phylogenetic and Epidemiological Data (Version 0.3.0)
2024
phylosamp : Sample Size Calculations for Molecular and Phylogenetic Studies (Version 1.0.1)
2021
pkgndep : Analyze Dependency Heaviness of R Packages (Version 1.99.3)
2020
plinkQC : Genotype Quality Control with 'PLINK' (Version 1.0.0)
2018
plotthis
Packages : (Version )
0
poppr : Genetic Analysis of Populations with Mixed Reproduction (Version 2.9.8)
2013
portalr : Create Useful Summaries of the Portal Data (Version 0.4.4)
2018
primer : Functions and Data for the Book, a Primer of Ecology with R (Version 1.2.0)
2009
promethee123 : PROMETHEE I, II, and III Methods (Version 0.1.0)
2020
psre : Presenting Statistical Results Effectively (Version 0.4)
2022
qad : Quantification of Asymmetric Dependence (Version 1.0.6)
2018
qbrms : Quick Bayesian Regression Models Using 'INLA' with 'brms' Syntax (Version 1.0.1)
2025
qmd : Quantification of Multivariate Dependence (Version 1.1.3)
2021
r4pde : Companion to R for Plant Disease Epidemiology Book (Version 0.1.0)
2025
reportRmd : Tidy Presentation of Clinical Reporting (Version 0.1.1)
2022
ricu : Intensive Care Unit Data with R (Version 0.6.3)
2020
ridigbio : Interface to the iDigBio Data API (Version 0.4.1)
2015
rliger : Linked Inference of Genomic Experimental Relationships (Version 2.2.1)
2021
rmacrostrat : Fetch Geologic Data from the 'Macrostrat' Platform (Version 1.0.0)
2024
rmsMD : Output Results from 'rms' Models for Medical Journals (Version 1.0.1)
2025
rsofun : The P-Model and BiomeE Modelling Framework (Version 5.1.0)
2023
runstats : Fast Computation of Running Statistics for Time Series (Version 1.1.0)
2019
sampbias : Evaluating Geographic Sampling Bias in Biological Collections (Version 2.0.0)
2024
scITD : Single-Cell Interpretable Tensor Decomposition (Version 1.0.4)
2021
scatr : Create Scatter Plots with Marginal Density or Box Plots (Version 1.0.1)
2017
serofoi
Data : (Version )
0
sgraph : Network Visualization Using 'sigma.js' (Version 1.1.0)
2024
sherlock : Graphical Displays for Structured Problem Solving and Diagnosis (Version 0.7.0)
2022
sicegar : Analysis of Single-Cell Viral Growth Curves (Version 0.3.0)
2017
sigminer
Variations : (Version )
0
simaerep
Events : (Version )
0
sjPlot : Data Visualization for Statistics in Social Science (Version 2.9.0)
2013
sleepwalk : Interactively Explore Dimension-Reduced Embeddings (Version 0.3.2)
2019
slendr : A Simulation Framework for Spatiotemporal Population Genetics (Version 1.4.0)
2022
smplot2
Publications : (Version )
0
snplinkage
Visualizations : (Version )
0
spatgeom : Geometric Spatial Point Analysis (Version 0.3.0)
2022
specr : Conducting and Visualizing Specification Curve Analyses (Version 1.0.0)
2020
spiralize : Visualize Data on Spirals (Version 1.1.0)
2021
spiro : Manage Data from Cardiopulmonary Exercise Testing (Version 0.2.3)
2022
ssMousetrack
Stan : (Version )
0
stabm : Stability Measures for Feature Selection (Version 1.2.2)
2019
stppSim : Spatiotemporal Point Patterns Simulation (Version 1.3.4)
2022
sulcimap : Mapping Cortical Folding Patterns (Version 1.0.6)
2025
susieR : Sum of Single Effects Linear Regression (Version 0.14.2)
2021
tEDM : Temporal Empirical Dynamic Modeling (Version 1.2)
2025
tabxplor : User-Friendly Tables with Color Helpers for Data Exploration (Version 1.3.1)
2021
tagtools : Work with Data from High-Resolution Biologging Tags (Version 0.3.0)
2023
talkr : Plotting Conversation Data (Version 0.1.3)
2024
teal.modules.clinical : 'teal' Modules for Standard Clinical Outputs (Version 0.12.0)
2024
tern.mmrm : Tables and Graphs for Mixed Models for Repeated Measures (MMRM) (Version 0.3.3)
2023
tern : Create Common TLGs Used in Clinical Trials (Version 0.9.10)
2023
tidybayes : Tidy Data and 'Geoms' for Bayesian Models (Version 3.0.7)
2018
tidycensuskr : Easy Access for South Korea Census Data and Boundaries (Version 0.2.7)
2025
timbeR : Calculate Wood Volumes from Taper Functions (Version 2.0.1)
2022
tinyarray : Expression Data Analysis and Visualization (Version 2.4.3)
2021
tmod
Transcriptomics : (Version )
0
transPlotR : Visualize Transcript Structures in Elegant Way (Version 0.0.2)
2022
trtswitch : Treatment Switching (Version 0.2.3)
2024
tsdataleaks : Exploit Data Leakages in Time Series Forecasting Competitions (Version 2.1.1)
2024
umx : Structural Equation Modeling and Twin Modeling in R (Version 4.60.0)
2015
valr : Genome Interval Arithmetic (Version 0.9.1)
2016
vici : Vaccine Induced Cellular Immunogenicity with Bivariate Modeling (Version 0.7.3)
2019
vibass : Materials for Introductory Course on Bayesian Learning (Version 1.0.3)
2025
vimp : Perform Inference on Algorithm-Agnostic Variable Importance (Version 2.3.6)
2018
worrrd : Generate Wordsearch and Crossword Puzzles (Version 0.1.0)
2022
wqspt : Permutation Test for Weighted Quantile Sum Regression (Version 1.0.2)
2023
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RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN).
Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.
