geiger: Analysis of Evolutionary Diversification

Canonical link: https://rscholar.com/pkg/geiger

Luke Harmon • Matthew Pennell • Chad Brock • Joseph Brown • Wendell Challenger, • Jon Eastman • Rich FitzJohn • Rich Glor • Gene Hunt • Liam Revell • Graham Slater, • Josef Uyeda • Jason Weir • CRAN team • View description and downloads View dependencies GitHub project

2007 Published

0 Citations

14 Authors

27 Revisions

2.0.11 Version

GPL-2 License

Referenced by ⇅	Year
Rarefy: Rarefaction Methods (Version 1.1.1)	2020
treeplyr: "dplyr" Functionality for Matched Tree and Data Objects (Version 0.1.10)	2016
datelife: Scientific Data on Time of Lineage Divergence for Your Taxa (Version 0.6.8)	2022
OpenTreeChronograms: Open Tree of Life Chronograms (Version 2022.1.28)	2022
hilldiv: Integral Analysis of Diversity Based on Hill Numbers (Version 1.5.1)	2019
nichevol: Tools for Ecological Niche Evolution Assessment Considering Uncertainty (Version 0.1.20)	2020
pcmabc: Approximate Bayesian Computations for Phylogenetic Comparative Methods (Version 1.1.3)	2018
ppgm: PaleoPhyloGeographic Modeling of Climate Niches and Species Distributions (Version 1.1)	2024
secsse: Several Examined and Concealed States-Dependent Speciation and Extinction (Version 3.5.0)	2019
RPANDA: Phylogenetic ANalyses of DiversificAtion (Version 2.5)	2014
FishPhyloMaker: Phylogenies for a List of Finned-Ray Fishes (Version 0.2.0)	2021
OUwie: Analysis of Evolutionary Rates in an OU Framework (Version 2.10)	2011
PNC Communities: (Version )	0
RNeXML: Semantically Rich I/O for the 'NeXML' Format (Version 2.4.11)	2014
TreeSim: Simulating Phylogenetic Trees (Version 2.4)	2010
cauphy: Trait Evolution on Phylogenies Using the Cauchy Process (Version 1.0.3)	2023
convevol: Analysis of Convergent Evolution (Version 2.2.1)	2013
deepSTRAPP: Test for Differences in Diversification Rates over Time (Version 1.0.0)	2026
diversitree: Comparative 'Phylogenetic' Analyses of Diversification (Version 0.10-1)	2010
evobiR: Comparative and Population Genetic Analyses (Version 1.1)	2013
fishtree: Interface to the Fish Tree of Life API (Version 0.3.4)	2018
hillR: Diversity Through Hill Numbers (Version 0.5.2)	2018
hisse: Hidden State Speciation and Extinction (Version 2.1.11)	2015
markophylo: Markov Chain Models for Phylogenetic Trees (Version 1.0.9)	2015
nichevol Uncertainty: (Version )	0
nodeSub: Simulate DNA Alignments Using Node Substitutions (Version 1.2.9)	2021
pcmabc Methods: (Version )	0
phytools: Phylogenetic Tools for Comparative Biology (and Other Things) (Version 2.5-2)	2011
pmc: Phylogenetic Monte Carlo (Version 1.0.6)	2012
ppgm Distributions: (Version )	0
ratematrix: Bayesian Estimation of the Evolutionary Rate Matrix (Version 1.2.5)	2018
secsse Extinction: (Version )	0
sensiPhy: Sensitivity Analysis for Comparative Methods (Version 0.8.5)	2016
surface: Fitting Hansen Models to Investigate Convergent Evolution (Version 0.6)	2013
treats: Trees and Traits Simulations (Version 1.1.6)	2023
treedata.table: Manipulation of Matched Phylogenies and Data using 'data.table' (Version 0.1.1)	2020
treestats: Phylogenetic Tree Statistics (Version 1.70.8)	2024
windex: Analysing Convergent Evolution using the Wheatsheaf Index (Version 2.1.0)	2014

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