Referenced by ⇅
Year
babsim.hospital : Bartz & Bartz Simulation Hospital (Version 11.8.8)
2020
BacArena : Modeling Framework for Cellular Communities in their
Environments (Version 1.8.2)
2015
bayesloglin : Bayesian Analysis of Contingency Table Data (Version 1.0.1)
2016
BayesMRA : Bayesian Multi-Resolution Gaussian Process Approximations (Version 1.0.0)
2020
bcp : Bayesian Analysis of Change Point Problems (Version 4.0.3)
2006
beam : Fast Bayesian Inference in Large Gaussian Graphical Models (Version 2.0.2)
2018
BSBT : The Bayesian Spatial Bradley--Terry Model (Version 1.2.1)
2020
CIDER : Meta-Clustering for Single-Cell Data Integration and Evaluation (Version 0.99.1)
2021
cRegulome : Obtain and Visualize Regulome-Gene Expression Correlations in
Cancer (Version 0.3.2)
2018
crimelinkage : Statistical Methods for Crime Series Linkage (Version 0.0.4)
2015
DCD : Differential Community Detection in Paired Biological Networks (Version 0.1.0)
2017
dcGOR : Analysis of Ontologies and Protein Domain Annotations (Version 1.0.6)
2014
diffusr : Network Diffusion Algorithms (Version 0.1.4)
2016
discretecdAlgorithm : Coordinate-Descent Algorithm for Learning Sparse Discrete
Bayesian Networks (Version 0.0.7)
2016
dnapath : Differential Network Analysis using Gene Pathways (Version 0.7.4)
2020
dnet : Integrative Analysis of Omics Data in Terms of Network,
Evolution and Ontology (Version 1.1.7)
2014
dragon : Deep Time Redox Analysis of the Geobiology Ontology Network (Version 1.2.1)
2019
DynComm : Dynamic Network Communities Detection and Generation (Version 2020.1.6)
2020
dynplot : Visualising Single-Cell Trajectories (Version 1.1.2)
2021
epistasis : Detecting Epistatic Selection with Partially Observed Genotype
Data (Version 0.0.1-1)
2016
ergmclust : ERGM-Based Network Clustering (Version 1.0.0)
2021
exp2flux : Convert Gene EXPression Data to FBA FLUXes (Version 0.1)
2016
fastclime : A Fast Solver for Parameterized LP Problems, Constrained L1
Minimization Approach to Sparse Precision Matrix Estimation and
Dantzig Selector (Version 1.4.1.1)
2013
gDefrag : Graph-Based Landscape De-Fragmentation (Version 0.3)
2018
geonet : Intensity Estimation on Geometric Networks with Penalized
Splines (Version 0.7.3)
2021
gmat : Simulation of Graphical Correlation Matrices (Version 0.2.2)
2018
hergm : Hierarchical Exponential-Family Random Graph Models (Version 4.1-10)
2010
iconr : Graphical and Spatial Analysis for Prehistoric Iconography (Version 0.1.0)
2021
inlmisc : Miscellaneous Functions for the USGS INL Project Office (Version 0.5.5)
2016
JointNets : End-to-End Sparse Gaussian Graphical Model Simulation,
Estimation, Visualization, Evaluation and Application (Version 2.0.1)
2018
LEANR : Finds "Local Subnetworks" Within an Interaction Network which
Show Enrichment for Differentially Expressed Genes (Version 1.4.9)
2016
lvm4net : Latent Variable Models for Networks (Version 0.3)
2014
molic : Multivariate Outlier Detection in Contingency Tables (Version 2.0.3)
2020
molnet : Predicting Differential Drug Response using Multi-Omics Networks (Version 0.1.0)
2021
netchain : Inferring Causal Effects on Collective Outcomes under
Interference (Version 0.2.0)
2019
netgen : Network Generator for Combinatorial Graph Problems (Version 1.3.2)
2015
netjack : Tools for Working with Samples of Networks (Version 1.2.0)
2018
OutrankingTools : Functions for Solving Multiple-criteria Decision-making Problems (Version 1.0)
2014
pbixr : Access Data and Metadata from "Microsoft" "Power BI" Documents (Version 0.1.4)
2020
pkgstats : Metrics of R Packages (Version 0.1.1)
2022
propr : Calculating Proportionality Between Vectors of Compositional
Data (Version 4.2.6)
2016
ragt2ridges : Ridge Estimation of Vector Auto-Regressive (VAR) Processes (Version 0.3.4)
2016
rescue : Bootstrap Imputation for Single-Cell RNA-Seq Data (Version 1.0.3)
2020
rmangal : "Mangal" Client (Version 2.1.3)
2019
rmonad : A Monadic Pipeline System (Version 0.7.0)
2017
roprov : Low-Level Support for Provenance Capture Between in-Memory R
Objects (Version 0.1.2)
2018
safedata : Interface to Data from the SAFE Project (Version 1.1.3)
2020
scTEP : Single-Cell Trajectory Inference using Ensemble Pseudotimes (Version 0.1.0)
2022
SetRank : Advanced Gene Set Enrichment Analysis (Version 1.1.0)
2015
simPATHy : A Method for Simulating Data from Perturbed Biological Pathways (Version 0.6)
2016
SNscan : Scan Statistics in Social Networks (Version 1.0)
2016
sparsebnUtils : Utilities for Learning Sparse Bayesian Networks (Version 0.0.8)
2016
spqdep : Testing for Spatial Independence of Qualitative Data in Cross
Section (Version 0.1.2)
2022
spruce : Spatial Random Effects Clustering of Single Cell Data (Version 0.99.1)
2022
SSN : Spatial Modeling on Stream Networks (Version 1.1.17)
2013
SteinerNet : Steiner Tree Approach for Graph Analysis (Version 3.1.0)
2012
vennLasso : Variable Selection for Heterogeneous Populations (Version 0.1.6)
2017
VertexSort : Network Hierarchical Structure and Randomization (Version 0.1-1)
2017
wiseR : A Shiny Application for End-to-End Bayesian Decision Network
Analysis and Web-Deployment (Version 1.0.1)
2018
SourceSet : A Graphical Model Approach to Identify Primary Genes in
Perturbed Biological Pathways (Version 0.1.5)
2018
gremes : Estimation of Tail Dependence in Graphical Models (Version 0.1.1)
2021
DependencyReviewer : Tool Suite to Investigate Other Packages (Version 1.2.3)
2022
gsdensity : Density-Based Gene Set Specificity Evaluation (Version 0.1.2)
2023
graphseg : Segmentation of Graph-Based Signals (Version 0.1.1)
2023
ExprNet : Characterizing Differential Expression of Selected Edges on a
Network (Version 1.0.0)
2023
GSNA : Gene Set Networking Analysis Package (Version 0.1.4.2)
2024
comradesOO : Analysis of COMRADES (Cross-Linking Matched RNA and Deep Sequencing) Data (Version 0.1.1)
2023
loe : Local Ordinal Embedding (Version 1.1)
2014
CARlasso : Conditional Autoregressive LASSO (Version 0.1.2)
2021
pedmod : Pedigree Models (Version 0.2.4)
2021
PaRe : A Way to Perform Code Review or QA on Other Packages (Version 0.1.13)
2023
refdb : A DNA Reference Library Manager (Version 0.1.1)
2022
metacoder : Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data (Version 0.3.7)
2016
spathial : Evolutionary Analysis (Version 0.1.2)
2020
skynet : Generates Networks from BTS Data (Version 1.4.3)
2018
spNetwork : Spatial Analysis on Network (Version 0.4.4.3)
2021
Corbi : Collection of Rudimentary Bioinformatics Tools (Version 0.6-2)
2016
purgeR : Inbreeding-Purging Estimation in Pedigreed Populations (Version 1.8.2)
2021
qdap : Bridging the Gap Between Qualitative Data and Quantitative Analysis (Version 2.4.6)
2013
qgraph : Graph Plotting Methods, Psychometric Data Visualization and Graphical Model Estimation (Version 1.9.8)
2011
AFM : Atomic Force Microscope Image Analysis (Version 2.0)
2015
AHPWR : Compute Analytic Hierarchy Process (Version 0.1.0)
2022
AnimalHabitatNetwork : Networks Characterising the Physical Configurations of Animal Habitats (Version 0.1.0)
2019
AnimalSequences : Analyse Animal Sequential Behaviour and Communication (Version 0.2.0)
2024
AurieLSHGaussian : Creates a Neighbourhood Using Locality Sensitive Hashing for Gaussian Projections (Version 0.2.0)
2017
BASiNET : Classification of RNA Sequences using Complex Network Theory (Version 0.0.5)
2017
BASiNETEntropy : Classification of RNA Sequences using Complex Network and Information Theory (Version 0.99.6)
2022
BCT : Bayesian Context Trees for Discrete Time Series (Version 1.2)
2020
BDgraph : Bayesian Structure Learning in Graphical Models using Birth-Death MCMC (Version 2.73)
2012
BGmisc : An R Package for Extended Behavior Genetics Analysis (Version 1.3.2)
2020
BNSL : Bayesian Network Structure Learning (Version 0.1.4)
2017
BallMapper : The Ball Mapper Algorithm (Version 0.2.0)
2019
BayesNetBP : Bayesian Network Belief Propagation (Version 1.6.1)
2017
BayesSUR : Bayesian Seemingly Unrelated Regression Models in High-Dimensional Settings (Version 2.2-1)
2019
BeeBDC : Occurrence Data Cleaning (Version 1.2.1)
2023
BiCausality : Binary Causality Inference Framework (Version 0.1.4)
2022
BioM2 : Biologically Explainable Machine Learning Framework (Version 1.1.0)
2023
Bioi : Biological Image Analysis (Version 0.2.10)
2018
Bios2cor : From Biological Sequences and Simulations to Correlation
Analysis (Version 2.2.1)
2017
BiodiversityR : Package for Community Ecology and Suitability Analysis (Version 2.16-1)
2007
BlockmodelingGUI : GUI for the Generalised Blockmodeling of Valued Networks (Version 1.8.4)
2022
BoolNet : Construction, Simulation and Analysis of Boolean Networks (Version 2.1.9)
2009
BoomSpikeSlab : MCMC for Spike and Slab Regression (Version 1.2.6)
2014
Boptbd : Bayesian Optimal Block Designs (Version 1.0.5)
2020
BoundaryStats : Boundary Overlap Statistics (Version 2.2.0)
2023
C443 : See a Forest for the Trees (Version 3.4.0)
2018
CARBayes : Spatial Generalised Linear Mixed Models for Areal Unit Data (Version 6.1.1)
2012
CASCORE : Covariate Assisted Spectral Clustering on Ratios of Eigenvectors (Version 0.1.2)
2022
CBnetworkMA : Contrast-Based Bayesian Network Meta Analysis (Version 0.1.0)
2024
CINNA : Deciphering Central Informative Nodes in Network Analysis (Version 1.2.2)
2017
CITMIC : Estimation of Cell Infiltration Based on Cell Crosstalk (Version 0.1.2)
2024
CKMRpop : Forward-in-Time Simulation and Tallying of Pairwise Relationships (Version 0.1.3)
2021
CNVScope : A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization (Version 3.7.2)
2018
CTD : A Method for 'Connecting The Dots' in Weighted Graphs (Version 1.3)
2020
Canek : Batch Correction of Single Cell Transcriptome Data (Version 0.2.5)
2022
Cascade : Selection, Reverse-Engineering and Prediction in Cascade Networks (Version 2.1)
2019
CePa : Centrality-Based Pathway Enrichment (Version 0.8.1)
2012
CeRNASeek : Identification and Analysis of ceRNA Regulation (Version 2.1.3)
2019
CliquePercolation : Clique Percolation for Networks (Version 0.4.0)
2019
ClusTorus : Prediction and Clustering on the Torus by Conformal Prediction (Version 0.2.2)
2021
ClustAssess : Tools for Assessing Clustering (Version 0.3.0)
2021
CoDiNA : Co-Expression Differential Network Analysis (Version 1.1.2)
2018
CoNI : Correlation Guided Network Integration (CoNI) (Version 0.1.0)
2021
ConnMatTools : Tools for Working with Connectivity Data (Version 0.3.5)
2014
ConnectednessApproach : Connectedness Approach (Version 1.0.3)
2022
ConsensusClustering : Consensus Clustering (Version 1.5.0)
2024
CooRTweet : Coordinated Networks Detection on Social Media (Version 2.0.2)
2023
CovCombR : Combine Partial Covariance / Relationship Matrices (Version 1.0)
2020
CurricularAnalytics : Exploring and Analyzing Academic Curricula (Version 1.0.0)
2024
DCLEAR : Distance Based Cell Lineage Reconstruction (Version 1.0.13)
2021
DDD : Diversity-Dependent Diversification (Version 5.2.2)
2012
DDPNA : Disease-Drived Differential Proteins Co-Expression Network Analysis (Version 0.3.3)
2019
DIscBIO : A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics (Version 1.2.2)
2020
DNLC : Differential Network Local Consistency Analysis (Version 1.0.0)
2016
DRviaSPCN : Drug Repurposing in Cancer via a Subpathway Crosstalk Network (Version 0.1.4)
2021
DRquality : Quality Measurements for Dimensionality Reduction (Version 0.2.1)
2023
DTSEA : Drug Target Set Enrichment Analysis (Version 0.0.3)
2022
DemoKin : Estimate Population Kin Distribution (Version 1.0.3)
2023
DiagrammeR : Graph/Network Visualization (Version 1.0.11)
2015
Diderot : Bibliographic Network Analysis (Version 0.13)
2017
DiffCorr : Analyzing and Visualizing Differential Correlation Networks in Biological Data (Version 0.4.4)
2015
DiffNet : Identifying Significant Node Scores using Network Diffusion Algorithm (Version 1.0.2)
2017
DirectedClustering : Directed Weighted Clustering Coefficient (Version 1.0.0)
2018
DrDimont : Drug Response Prediction from Differential Multi-Omics Networks (Version 0.1.4)
2022
DramaAnalysis : Analysis of Dramatic Texts (Version 3.0.2)
2019
DrugSim2DR : Predict Drug Functional Similarity to Drug Repurposing (Version 0.1.1)
2022
ECoL : Complexity Measures for Supervised Problems (Version 0.3.0)
2018
EDOIF : Empirical Distribution Ordering Inference Framework (EDOIF) (Version 0.1.3)
2019
EGAnet : Exploratory Graph Analysis – a Framework for Estimating the Number of Dimensions in Multivariate Data using Network Psychometrics (Version 2.1.0)
2019
ERPM : Exponential Random Partition Models (Version 0.2.0)
2024
EcoNetGen : Simulate and Sample from Ecological Interaction Networks (Version 0.2.4)
2018
EcotoneFinder : Characterising and Locating Ecotones and Communities (Version 0.2.3)
2020
EmbedSOM : Fast Embedding Guided by Self-Organizing Map (Version 2.1.2)
2019
EpiILMCT : Continuous Time Distance-Based and Network-Based Individual Level Models for Epidemics (Version 1.1.7)
2017
EstimateGroupNetwork : Perform the Joint Graphical Lasso and Selects Tuning Parameters (Version 0.3.1)
2017
FCMapper : Fuzzy Cognitive Mapping (Version 1.1)
2015
FCPS : Fundamental Clustering Problems Suite (Version 1.3.4)
2020
FactorCopula : Factor, Bi-Factor, Second-Order and Factor Tree Copula Models (Version 0.9.3)
2020
FedData : Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources (Version 4.0.1)
2015
FinNet : Quickly Build and Manipulate Financial Networks (Version 0.2.1)
2023
FindIt : Finding Heterogeneous Treatment Effects (Version 1.2.0)
2012
ForestGapR : Tropical Forest Canopy Gaps Analysis (Version 0.1.7)
2018
FrF2 : Fractional Factorial Designs with 2-Level Factors (Version 2.3-3)
2007
GADAG : A Genetic Algorithm for Learning Directed Acyclic Graphs (Version 0.99.0)
2017
GALLO : Genomic Annotation in Livestock for Positional Candidate LOci (Version 1.5)
2020
GGally : Extension to 'ggplot2' (Version 2.2.1)
2010
GISSB : Network Analysis on the Norwegian Road Network (Version 1.1)
2023
GMPro : Graph Matching with Degree Profiles (Version 0.1.0)
2020
GNAR : Methods for Fitting Network Time Series Models (Version 1.1.4)
2018
GOCompare : Comprehensive GO Terms Comparison Between Species (Version 1.0.2.1)
2021
GOxploreR : Structural Exploration of the Gene Ontology (GO) Knowledge Base (Version 1.2.7)
2020
GREMLINS : Generalized Multipartite Networks (Version 0.2.1)
2020
GSD : Graph Signal Decomposition (Version 1.0.0)
2024
GeNetIt : Spatial Graph-Theoretic Genetic Gravity Modelling (Version 0.1-6)
2016
GephiForR : 'Gephi' Network Visualization (Version 0.1.0)
2024
GoodFitSBM : Monte Carlo Goodness-of-Fit Tests for Stochastic Block Models (Version 0.0.1)
2024
HOasso : Higher Order Assortativity for Complex Networks (Version 1.0.1)
2023
HTSSIP : High Throughput Sequencing of Stable Isotope Probing Data Analysis (Version 1.4.1)
2016
HTT : Hypothesis Testing Tree (Version 0.1.2)
2022
HelpersMG : Tools for Environmental Analyses, Ecotoxicology and Various R Functions (Version 6.2)
2015
HeteroGGM : Gaussian Graphical Model-Based Heterogeneity Analysis (Version 1.0.1)
2021
Holomics : An User-Friendly R 'shiny' Application for Multi-Omics Data Integration and Analysis (Version 1.1.1)
2023
HospitalNetwork : Building Networks of Hospitals Through Patients Transfers (Version 0.9.3)
2023
HyperG : Hypergraphs in R (Version 1.0.0)
2021
ICDS : Identification of Cancer Dysfunctional Subpathway with Omics Data (Version 0.1.3)
2019
IDMIR : Identification of Dysregulated MiRNAs Based on MiRNA-MiRNA Interaction Network (Version 0.1.0)
2023
IDSpatialStats : Estimate Global Clustering in Infectious Disease (Version 0.4.0)
2016
ILSM : Analyze Interconnection Structure of Multilayer Interaction Networks (Version 1.0.3.2)
2024
IMEC : Ising Model of Explanatory Coherence (Version 0.2.0)
2020
IOHanalyzer : Data Analysis Part of 'IOHprofiler' (Version 0.1.8.10)
2019
ITNr : Analysis of the International Trade Network (Version 0.7.0)
2018
JANE : Just Another Latent Space Network Clustering Algorithm (Version 0.1.1)
0
JGL : Performs the Joint Graphical Lasso for Sparse Inverse Covariance Estimation on Multiple Classes (Version 2.3.2)
2012
Jdmbs : Monte Carlo Option Pricing Algorithms for Jump Diffusion Models with Correlational Companies (Version 1.4)
2017
KMD : Kernel Measure of Multi-Sample Dissimilarity (Version 0.1.0)
2022
Karen : Kalman Reaction Networks (Version 1.0)
2022
L1centrality : Graph/Network Analysis Based on L1 Centrality (Version 0.3.0)
2023
LPKsample : LP Nonparametric High Dimensional K-Sample Comparison (Version 2.1)
2017
LSTbook : Data and Software for "Lessons in Statistical Thinking" (Version 0.5.0)
2024
LSVAR : Estimation of Low Rank Plus Sparse Structured Vector Auto-Regressive (VAR) Model (Version 1.2)
2021
LTFHPlus : Implementation of LT-FH++ (Version 2.1.1)
2024
Libra : Linearized Bregman Algorithms for Generalized Linear Models (Version 1.7)
2015
LncPath : Identifying the Pathways Regulated by LncRNA Sets of Interest (Version 1.1)
2016
LogisticCopula : A Copula Based Extension of Logistic Regression (Version 0.1.0)
2024
LoopDetectR : Comprehensive Feedback Loop Detection in ODE Models (Version 0.1.2)
2020
LorMe : Lightening One-Code Resolving Microbial Ecology Solution (Version 1.1.0)
2024
MBNMAdose : Dose-Response MBNMA Models (Version 0.4.3)
2019
MBNMAtime : Run Time-Course Model-Based Network Meta-Analysis (MBNMA) Models (Version 0.2.4)
2019
MEGENA : Multiscale Clustering of Geometrical Network (Version 1.3.7)
2016
MLCOPULA : Classification Models with Copula Functions (Version 1.0.1)
2024
MMOC : Multi-Omic Spectral Clustering using the Flag Manifold (Version 0.1.1.0)
2023
MNS : Mixed Neighbourhood Selection (Version 1.0)
2015
MR.RGM : Multivariate Bidirectional Mendelian Randomization Networks (Version 0.0.3)
2024
MRFcov : Markov Random Fields with Additional Covariates (Version 1.0.39)
2018
MRReg : MDL Multiresolution Linear Regression Framework (Version 0.1.5)
2020
MRS : Multi-Resolution Scanning for Cross-Sample Differences (Version 1.2.6)
2015
MSCquartets : Analyzing Gene Tree Quartets under the Multi-Species Coalescent (Version 3.0)
2019
MSG : Data and Functions for the Book Modern Statistical Graphics (Version 0.8)
2011
MTA : Multiscalar Territorial Analysis (Version 0.6.0)
2017
MadanTextNetwork : Persian Text Mining Tool for Co-Occurrence Network (Version 0.1.0)
2023
MapperAlgo : Topological Data Analysis: Mapper Algorithm (Version 1.0)
2024
Mercator : Clustering and Visualizing Distance Matrices (Version 1.1.5)
2019
MetaLandSim : Landscape and Range Expansion Simulation (Version 2.0.0)
2014
MetaNet : Network Analysis for Omics Data (Version 0.1.2)
2024
MetricGraph : Random Fields on Metric Graphs (Version 1.3.0)
2023
MultIS : Reconstruction of Clones from Integration Site Readouts and Visualization (Version 0.6.2)
2021
NAC : Network-Adjusted Covariates for Community Detection (Version 0.1.0)
2023
NAIR : Network Analysis of Immune Repertoire (Version 1.0.4)
2023
NEpiC : Network Assisted Algorithm for Epigenetic Studies Using Mean and Variance Combined Signals (Version 1.0.1)
2015
NIMAA : Nominal Data Mining Analysis (Version 0.2.1)
2021
Neighboot : Neighborhood Bootstrap Method for RDS (Version 1.0.1)
2020
NetCoupler : Inference of Causal Links Between a Network and an External Variable (Version 0.1.0)
2022
NetFACS : Network Applications to Facial Communication Data (Version 0.5.0)
2021
NetMix : Dynamic Mixed-Membership Network Regression Model (Version 0.2.0.2)
2019
NetOrigin : Origin Estimation for Propagation Processes on Complex Networks (Version 1.1-6)
2016
NetSci : Calculates Basic Network Measures Commonly Used in Network Medicine (Version 1.0.1)
2021
NetSwan : Network Strengths and Weaknesses Analysis (Version 0.1)
2015
NetworkChange : Bayesian Package for Network Changepoint Analysis (Version 0.8)
2017
NetworkComparr : Statistical Comparison of Networks (Version 0.0.0.9)
2023
NetworkDistance : Distance Measures for Networks (Version 0.3.4)
2017
NetworkExtinction : Extinction Simulation in Ecological Networks (Version 1.0.3)
2018
NetworkInference : Inferring Latent Diffusion Networks (Version 1.2.4)
2017
NetworkRiskMeasures : Risk Measures for (Financial) Networks (Version 0.1.4)
2017
NetworkToolbox : Methods and Measures for Brain, Cognitive, and Psychometric Network Analysis (Version 1.4.2)
2017
OCNet : Optimal Channel Networks (Version 1.2.2)
2019
ORION : Ordinal Relations (Version 1.0.3)
2020
OUwie : Analysis of Evolutionary Rates in an OU Framework (Version 2.10)
2011
OpenRepGrid.ic : Interpretive Clustering for Repertory Grids (Version 0.6.2)
2020
OpenRepGrid : Tools to Analyze Repertory Grid Data (Version 0.1.15)
2011
OrdCD : Ordinal Causal Discovery (Version 1.1.2)
2022
PAC : Partition-Assisted Clustering and Multiple Alignments of Networks (Version 1.1.4)
2016
PAFit : Generative Mechanism Estimation in Temporal Complex Networks (Version 1.2.10)
2015
PANACEA : Personalized Network-Based Anti-Cancer Therapy Evaluation (Version 1.0.1)
2023
PCGII : Partial Correlation Graph with Information Incorporation (Version 1.1.2)
2024
PGRdup : Discover Probable Duplicates in Plant Genetic Resources Collections (Version 0.2.3.9)
2015
PLEXI : Multiplex Network Analysis (Version 1.0.0)
2023
PLNmodels : Poisson Lognormal Models (Version 1.2.0)
2019
PNAR : Poisson Network Autoregressive Models (Version 1.7)
2022
POSetR : Partially Ordered Sets in R (Version 1.1.4)
2021
PUGMM : Parsimonious Ultrametric Gaussian Mixture Models (Version 0.1.0)
2024
PWIR : Provides a Function to Calculate Prize Winner Indices Based on Bibliometric Data (Version 0.0.3)
2022
PairViz : Visualization using Graph Traversal (Version 1.3.6)
2008
PathwaySpace : Spatial Projection of Network Signals along Geodesic Paths (Version 0.99.4)
2024
Patterns : Deciphering Biological Networks with Patterned Heterogeneous Measurements (Version 1.5)
2019
PhaseTypeR : General-Purpose Phase-Type Functions (Version 1.0.4)
2021
PlackettLuce : Plackett-Luce Models for Rankings (Version 0.4.3)
2017
Platypus : Single-Cell Immune Repertoire and Gene Expression Analysis (Version 3.6.0)
2021
PolyTree : Estimate Causal Polytree from Data (Version 0.0.1)
2024
ProgModule : Identification of Prognosis-Related Mutually Exclusive Modules (Version 0.1.0)
2024
ProjectManagement : Management of Deterministic and Stochastic Projects (Version 2.0.2)
2018
R.temis : Integrated Text Mining Solution (Version 0.1.3)
2018
R6causal : R6 Class for Structural Causal Models (Version 0.8.3)
2021
RCA : Relational Class Analysis (Version 2.0)
2013
RDS : Respondent-Driven Sampling (Version 0.9-10)
2009
RGraphSpace : A Lightweight Interface Between 'ggplot2' and 'igraph' Objects (Version 1.0.6)
2024
RNAseqNet : Log-Linear Poisson Graphical Model with Hot-Deck Multiple Imputation (Version 0.1.5)
2017
RNetLogo : Provides an Interface to the Agent-Based Modelling Platform 'NetLogo' (Version 1.0-4)
2011
RNewsflow : Tools for Comparing Text Messages Across Time and Media (Version 1.2.8)
2016
RPANDA : Phylogenetic ANalyses of DiversificAtion (Version 2.3)
2014
RPointCloud : Visualizing Topological Loops and Voids (Version 0.8.0)
2024
RSP : 'shiny' Applications for Statistical and Psychometric Analysis (Version 0.4)
2023
RScelestial : Scelestial: Steiner Tree Based Single-Cell Lineage Tree Inference (Version 1.0.4)
2019
RTMB : 'R' Bindings for 'TMB' (Version 1.6)
2023
RWgraph : Random Walks on Graphs Representing a Transactional Network (Version 1.0.0)
2023
RaceID : Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data (Version 0.3.8)
2018
Racmacs : Antigenic Cartography Macros (Version 1.2.9)
2023
Radviz : Project Multidimensional Data in 2D Space (Version 0.9.3)
2016
RavenR : Raven Hydrological Modelling Framework R Support and Analysis (Version 2.2.2)
2020
RcextTools : Analytical Procedures in Support of Brazilian Public Sector External Auditing (Version 0.1.1)
2017
RcmdrPlugin.RMTCJags : R MTC Jags 'Rcmdr' Plugin (Version 1.0-2)
2014
ReDaMoR : Relational Data Modeler (Version 0.7.6)
2020
ReliabilityTheory : Structural Reliability Analysis (Version 0.3.1)
2012
RepertoiR : Repertoire Graphical Visualization (Version 0.0.1)
2021
ReporterScore : Generalized Reporter Score-Based Enrichment Analysis for Omics Data (Version 0.1.8)
2024
ResIN : Response Item Networks (Version 2.0.0)
2023
RevEcoR : Reverse Ecology Analysis on Microbiome (Version 0.99.3)
2015
Rnmr1D : Perform the Complete Processing of a Set of Proton Nuclear Magnetic Resonance Spectra (Version 1.3.2)
2018
RobustIV : Robust Instrumental Variable Methods in Linear Models (Version 0.2.5)
2022
Rwclust : Random Walk Clustering on Weighted Graphs (Version 0.1.0)
2022
Ryacas : R Interface to the 'Yacas' Computer Algebra System (Version 1.1.5)
2007
Ryacas0 : Legacy 'Ryacas' (Interface to 'Yacas' Computer Algebra System) (Version 0.4.4)
2019
SARP.compo : Network-Based Interpretation of Changes in Compositional Data (Version 0.1.8)
2018
SBN : Generate Stochastic Branching Networks (Version 1.0.0)
2022
SCORPION : Single Cell Oriented Reconstruction of PANDA Individual Optimized Networks (Version 1.0.2)
2022
SEMID : Identifiability of Linear Structural Equation Models (Version 0.4.1)
2013
SEMdeep : Structural Equation Modeling with Deep Neural Network and Machine Learning (Version 0.1.0)
2024
SEMgraph : Network Analysis and Causal Inference Through Structural Equation Modeling (Version 1.2.2)
2021
SFSI : Sparse Family and Selection Index (Version 1.4.1)
2021
SID : Structural Intervention Distance (Version 1.1)
2015
SIRE : Finding Feedback Effects in SEM and Testing for Their Significance (Version 1.1.0)
2018
SITH : A Spatial Model of Intra-Tumor Heterogeneity (Version 1.1.0)
2020
SOAs : Creation of Stratum Orthogonal Arrays (Version 1.4)
2021
SOMMD : Self Organising Maps for the Analysis of Molecular Dynamics Data (Version 0.1.2)
2024
SOMbrero : SOM Bound to Realize Euclidean and Relational Outputs (Version 1.4-2)
2015
SSNbler : Assemble 'SSN' Objects (Version 1.0.1)
2024
STraTUS : Enumeration and Uniform Sampling of Transmission Trees for a Known Phylogeny (Version 1.1.2)
2019
SVN : Statistically Validated Networks (Version 1.0.1)
2019
ScorePlus : Implementation of SCORE, SCORE+ and Mixed-SCORE (Version 0.1)
2019
SelectBoost : A General Algorithm to Enhance the Performance of Variable Selection Methods in Correlated Datasets (Version 2.2.2)
2019
SemNeT : Methods and Measures for Semantic Network Analysis (Version 1.4.4)
2019
SeqDetect : Sequence and Latent Process Detector (Version 1.0.7)
2020
SeqNet : Generate RNA-Seq Data from Gene-Gene Association Networks (Version 1.1.3)
2019
Seurat : Tools for Single Cell Genomics (Version 5.1.0)
2017
ShapePattern : Tools for Analyzing Shapes and Patterns (Version 3.0.1)
2016
SignacX : Cell Type Identification and Discovery from Single Cell Gene Expression Data (Version 2.2.5)
2021
SmCCNet : Sparse Multiple Canonical Correlation Network Analysis Tool (Version 2.0.3)
2019
SoilR : Models of Soil Organic Matter Decomposition (Version 1.2.107)
2012
SpaDES.core : Core Utilities for Developing and Running Spatially Explicit Discrete Event Models (Version 2.1.0)
2017
SpatialGraph : The SpatialGraph Class and Utilities (Version 1.0-4)
2018
SubpathwayLNCE : Identify Signal Subpathways Competitively Regulated by LncRNAs Based on ceRNA Theory (Version 1.0)
2016
SubtypeDrug : Prioritization of Candidate Cancer Subtype Specific Drugs (Version 0.1.9)
2020
SuperCell : Simplification of scRNA-Seq Data by Merging Together Similar Cells (Version 1.0.1)
2024
SurvHiDim : High Dimensional Survival Data Analysis (Version 0.1.1)
2021
SystemicR : Monitoring Systemic Risk (Version 0.1.0)
2020
TAShiny : 'Text Analyzer Shiny' (Version 0.1.0)
2018
TDA : Statistical Tools for Topological Data Analysis (Version 1.9.1)
2021
TDApplied : Machine Learning and Inference for Topological Data Analysis (Version 3.0.4)
2022
TNC : Temporal Network Centrality (TNC) Measures (Version 0.1.0)
2017
TOHM : Testing One Hypothesis Multiple Times (Version 1.4)
2019
TPEA : A Novel Topology-Based Pathway Enrichment Analysis Approach (Version 3.1.0)
2016
TangledFeatures : Feature Selection in Highly Correlated Spaces (Version 0.1.1)
2023
TextMiningGUI : Text Mining GUI Interface (Version 0.3)
2020
Tlasso : Non-Convex Optimization and Statistical Inference for Sparse Tensor Graphical Models (Version 1.0.2)
2016
TreeDimensionTest : Trajectory Presence and Heterogeneity in Multivariate Data (Version 0.0.2)
2022
TunePareto : Multi-Objective Parameter Tuning for Classifiers (Version 2.5.3)
2010
UNCOVER : Utilising Normalisation Constant Optimisation via Edge Removal (UNCOVER) (Version 1.1.0)
2023
VARDetect : Multiple Change Point Detection in Structural VAR Models (Version 0.1.8)
2021
VOSONDash : User Interface for Collecting and Analysing Social Networks (Version 0.5.7)
2019
VertexSimilarity : Creates Vertex Similarity Matrix for an Undirected Graph (Version 0.1)
2016
VertexWiseR : Simplified Vertex-Wise Analyses of Whole-Brain and Hippocampal Surface (Version 1.1.0)
2024
WayFindR : Computing Graph Structures on WikiPathways (Version 0.1.2)
2024
WebGestaltR : Gene Set Analysis Toolkit WebGestaltR (Version 0.4.6)
2017
aPEAR : Advanced Pathway Enrichment Analysis Representation (Version 1.0.0)
2023
adegenet : Exploratory Analysis of Genetic and Genomic Data (Version 2.1.10)
2007
adproclus : Additive Profile Clustering Algorithms (Version 2.0.0)
2023
agop : Aggregation Operators and Preordered Sets (Version 0.2.4)
2013
akc : Automatic Knowledge Classification (Version 0.9.9)
2020
alakazam : Immunoglobulin Clonal Lineage and Diversity Analysis (Version 1.3.0)
2016
aniSNA : Statistical Network Analysis of Animal Social Networks (Version 1.1.1)
2023
anipaths : Animation of Multiple Trajectories with Uncertainty (Version 0.10.3)
2017
anocva : A Non-Parametric Statistical Test to Compare Clustering Structures (Version 0.1.1)
2016
ape : Analyses of Phylogenetics and Evolution (Version 5.8)
2002
apisensr : Interface to 'episensr' for Sensitivity Analysis of Epidemiological Results (Version 1.0.0)
2021
archeofrag : Refitting and Spatial Analysis in Archaeology (Version 0.8.2)
2020
arlclustering : Exploring Social Network Structures Through Friendship-Driven Community Detection with Association Rules Mining (Version 1.0.5)
2024
arulesViz : Visualizing Association Rules and Frequent Itemsets (Version 1.5.3)
2010
atrrr : Wrapper for the 'AT' Protocol Behind 'Bluesky' (Version 0.0.4)
2024
autoharp : Semi-Automatic Grading of R and Rmd Scripts (Version 0.0.10)
2021
autostats : Auto Stats (Version 0.4.1)
2021
backShift : Learning Causal Cyclic Graphs from Unknown Shift Interventions (Version 0.1.4.3)
2015
backbone : Extracts the Backbone from Graphs (Version 2.1.4)
2019
bamm : Species Distribution Models as a Function of Biotic, Abiotic and Movement Factors (BAM) (Version 0.5.0)
2022
bartMan : Create Visualisations for BART Models (Version 0.1.1)
2024
basket : Basket Trial Analysis (Version 0.10.11)
2019
baycn : Bayesian Inference for Causal Networks (Version 1.2.0)
2019
bbnet : Create Simple Predictive Models on Bayesian Belief Networks (Version 1.0.1)
2024
bc3net : Gene Regulatory Network Inference with Bc3net (Version 1.0.4)
2012
bcgam : Bayesian Constrained Generalised Linear Models (Version 1.0)
2018
bibliometrix : Comprehensive Science Mapping Analysis (Version 4.3.0)
2016
bifurcatingr : Bifurcating Autoregressive Models (Version 2.1.0)
2021
bigergm : Fit, Simulate, and Diagnose Hierarchical Exponential-Family Models for Big Networks (Version 1.2.3)
2024
bio3d : Biological Structure Analysis (Version 2.4-5)
2014
bioregion : Comparison of Bioregionalisation Methods (Version 1.1.1)
2023
bipartite : Visualising Bipartite Networks and Calculating Some (Ecological) Indices (Version 2.20)
2007
blackbox : Black Box Optimization and Exploration of Parameter Space (Version 1.1.46)
2016
bnclassify : Learning Discrete Bayesian Network Classifiers from Data (Version 0.4.8)
2015
bnlearn : Bayesian Network Structure Learning, Parameter Learning and Inference (Version 5.0.1)
2007
bnma : Bayesian Network Meta-Analysis using 'JAGS' (Version 1.6.0)
2019
bnmonitor : An Implementation of Sensitivity Analysis in Bayesian Networks (Version 0.2.2)
2021
bnstruct : Bayesian Network Structure Learning from Data with Missing Values (Version 1.0.15)
2015
bnviewer : Bayesian Networks Interactive Visualization and Explainable Artificial Intelligence (Version 0.1.6)
2018
bootcluster : Bootstrapping Estimates of Clustering Stability (Version 0.3.2)
2017
bootnet : Bootstrap Methods for Various Network Estimation Routines (Version 1.6)
2015
brainGraph : Graph Theory Analysis of Brain MRI Data (Version 3.1.0)
2015
breathteststan : Stan-Based Fit to Gastric Emptying Curves (Version 0.8.5)
2017
bsub : Submitter and Monitor of the 'LSF Cluster' (Version 1.1.0)
2020
btergm : Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood (Version 1.10.12)
2015
bwsTools : Tools for Case 1 Best-Worst Scaling (MaxDiff) Designs (Version 1.2.0)
2019
c3net : Inferring Large-Scale Gene Networks with C3NET (Version 1.1.1.1)
2011
cancerGI : Analyses of Cancer Gene Interaction (Version 1.0.1)
2016
cape : Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice (Version 3.1.2)
2013
cartograflow : Filtering Matrix for Flow Mapping (Version 1.0.5)
2019
cassowaryr : Compute Scagnostics on Pairs of Numeric Variables in a Data Set (Version 2.0.2)
2022
causact : Fast, Easy, and Visual Bayesian Inference (Version 0.5.5)
2020
causalDisco : Tools for Causal Discovery on Observational Data (Version 0.9.1)
2022
causaleffect : Deriving Expressions of Joint Interventional Distributions and Transport Formulas in Causal Models (Version 1.3.15)
2014
causaloptim : An Interface to Specify Causal Graphs and Compute Bounds on Causal Effects (Version 1.0.0)
2020
ccTensor : CUR/CX Tensor Decomposition (Version 1.0.2)
2021
cccd : Class Cover Catch Digraphs (Version 1.6)
2010
centiserve : Find Graph Centrality Indices (Version 1.0.0)
2017
centerline : Extract Centerline from Closed Polygons (Version 0.1)
2024
cfid : Identification of Counterfactual Queries in Causal Models (Version 0.1.7)
2021
cglasso : Conditional Graphical LASSO for Gaussian Graphical Models with Censored and Missing Values (Version 2.0.7)
2018
chatAI4R : Chat-Based Interactive Artificial Intelligence for R (Version 0.2.10)
2023
checked : Systematically Run R CMD Checks (Version 0.2.4)
2024
chemodiv : Analysing Chemodiversity of Phytochemical Data (Version 0.3.0)
2022
chessboard : Create Network Connections Based on Chess Moves (Version 0.1)
2023
cholera : Amend, Augment and Aid Analysis of John Snow's Cholera Map (Version 0.8.0)
2017
chouca : A Stochastic Cellular Automaton Engine (Version 0.1.99)
2024
cia : Learn and Apply Directed Acyclic Graphs for Causal Inference (Version 1.0.0)
0
cito : Building and Training Neural Networks (Version 1.1)
2022
clickstream : Analyzes Clickstreams Based on Markov Chains (Version 1.3.3)
2014
clustAnalytics : Cluster Evaluation on Graphs (Version 0.5.5)
2022
clustNet : Network-Based Clustering (Version 1.2.0)
2023
clustree : Visualise Clusterings at Different Resolutions (Version 0.5.1)
2018
clustringr : Cluster Strings by Edit-Distance (Version 1.0)
2019
coglasso : Collaborative Graphical Lasso - Multi-Omics Network Reconstruction (Version 1.0.2)
2024
comato : Analysis of Concept Maps and Concept Landscapes (Version 1.1)
2014
communication : Feature Extraction and Model Estimation for Audio of Human Speech (Version 0.1)
2021
concatipede : Easy Concatenation of Fasta Sequences (Version 1.0.1)
2021
concorR : CONCOR and Supplemental Functions (Version 0.2.1)
2020
conos : Clustering on Network of Samples (Version 1.5.2)
2021
corHMM : Hidden Markov Models of Character Evolution (Version 2.8)
2013
corTest : Robust Tests for Equal Correlation (Version 1.0.7)
2018
corclass : Correlational Class Analysis (Version 0.2.1)
2013
coreCT : Programmatic Analysis of Sediment Cores Using Computed Tomography Imaging (Version 1.3.3)
2017
corkscrew : Preprocessor for Data Modeling (Version 1.1)
2015
corpustools : Managing, Querying and Analyzing Tokenized Text (Version 0.5.1)
2017
corrViz : Visualise Correlations (Version 0.1.0)
2023
countland : Analysis of Biological Count Data, Especially from Single-Cell RNA-Seq (Version 0.1.2)
2022
covtracer : Contextualizing Tests (Version 0.0.1)
2024
cppRouting : Algorithms for Routing and Solving the Traffic Assignment Problem (Version 3.1)
2019
crandep : Network Analysis of Dependencies of CRAN Packages (Version 0.3.10)
2020
cranly : Package Directives and Collaboration Networks in CRAN (Version 0.6.0)
2018
criticalpath : An Implementation of the Critical Path Method (Version 0.2.1)
2021
crosstalkr : Analysis of Graph-Structured Data with a Focus on Protein-Protein Interaction Networks (Version 1.0.5)
2021
cspp : A Tool for the Correlates of State Policy Project Data (Version 0.3.3)
2020
csurvey : Constrained Regression for Survey Data (Version 1.9)
2021
cytometree : Automated Cytometry Gating and Annotation (Version 2.0.2)
2017
d3po : Fast and Beautiful Interactive Visualization for 'Markdown' and 'Shiny' (Version 0.5.5)
2021
d3r : 'd3.js' Utilities for R (Version 1.1.0)
2016
dagitty : Graphical Analysis of Structural Causal Models (Version 0.3-4)
2016
dartR.captive : Analysing 'SNP' Data to Support Captive Breeding (Version 0.75)
2023
dartR.base : Analysing 'SNP' and 'Silicodart' Data - Basic Functions (Version 0.98)
2023
dartR.popgen : Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis (Version 1.0.0)
2023
dartR : Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis (Version 2.9.7)
2017
data.tree : General Purpose Hierarchical Data Structure (Version 1.1.0)
2015
datapack : A Flexible Container to Transport and Manipulate Data and Associated Resources (Version 1.4.1)
2016
dbscan : Density-Based Spatial Clustering of Applications with Noise (DBSCAN) and Related Algorithms (Version 1.2-0)
2015
dc3net : Inferring Condition-Specific Networks via Differential Network Inference (Version 1.2.0)
2015
deaR : Conventional and Fuzzy Data Envelopment Analysis (Version 1.4.1)
2018
debkeepr : Analysis of Non-Decimal Currencies and Double-Entry Bookkeeping (Version 0.1.1)
2023
deepdep : Visualise and Explore the Deep Dependencies of R Packages (Version 0.4.3)
2020
degreenet : Models for Skewed Count Distributions Relevant to Networks (Version 1.3-6)
2008
delayed : A Framework for Parallelizing Dependent Tasks (Version 0.5.0)
2020
dendroNetwork : Create Networks of Dendrochronological Series using Pairwise Similarity (Version 0.5.4)
2024
dexterMST : CML and Bayesian Calibration of Multistage Tests (Version 0.9.6)
2018
diffeRenTES : Computation of TES-Based Cell Differentiation Trees (Version 0.3.2)
2022
diffee : Fast and Scalable Learning of Sparse Changes in High-Dimensional Gaussian Graphical Model Structure (Version 1.1.0)
2018
diffusionMap : Diffusion Map (Version 1.2.0)
2009
diffudist : Diffusion Distance for Complex Networks (Version 1.0.1)
2021
dimRed : A Framework for Dimensionality Reduction (Version 0.2.6)
2017
discourseGT : Analyze Group Patterns using Graph Theory in Educational Settings (Version 1.2.0)
2020
disparityfilter : Disparity Filter Algorithm for Weighted Networks (Version 2.2.3)
2015
distinctiveness : Distinctiveness Centrality (Version 1.0.1)
2023
diverse : Diversity Measures for Complex Systems (Version 0.1.5)
2015
dm : Relational Data Models (Version 1.0.10)
2020
dnr : Simulate Dynamic Networks using Exponential Random Graph Models (ERGM) Family (Version 0.3.5)
2018
dodgr : Distances on Directed Graphs (Version 0.4.1)
2017
dogesr : Work with the Doges/Dogaresse Dataset (Version 0.5.0)
2022
doolkit : Exploration of Dental Surface Topography (Version 1.42.2)
2021
dosearch : Causal Effect Identification from Multiple Incomplete Data Sources (Version 1.0.11)
2019
drake : A Pipeline Toolkit for Reproducible Computation at Scale (Version 7.13.10)
2017
dsem : Fit Dynamic Structural Equation Models (Version 1.3.0)
2023
dst : Using the Theory of Belief Functions (Version 1.8.0)
2015
dupNodes : Computes DNSLbetweenness, a Betweenness Measure that Includes Self-Loops (Version 0.3.0)
2024
dynetNLAResistance : Resisting Neighbor Label Attack in a Dynamic Network (Version 0.1.0)
2016
dyndimred : Dimensionality Reduction Methods in a Common Format (Version 1.0.4)
2019
dyngen : A Multi-Modal Simulator for Spearheading Single-Cell Omics Analyses (Version 1.0.5)
2020
dynwrap : Representing and Inferring Single-Cell Trajectories (Version 1.2.4)
2019
eHDPrep : Quality Control and Semantic Enrichment of Datasets (Version 1.3.3)
2022
easybgm : Extracting and Visualizing Bayesian Graphical Models (Version 0.2.1)
2023
ebdbNet : Empirical Bayes Estimation of Dynamic Bayesian Networks (Version 1.2.8)
2009
ecoCopula : Graphical Modelling and Ordination using Copulas (Version 1.0.2)
2020
ecodist : Dissimilarity-Based Functions for Ecological Analysis (Version 2.1.3)
2006
econet : Estimation of Parameter-Dependent Network Centrality Measures (Version 1.0.0.1)
2018
econetwork : Analyzing Ecological Networks (Version 0.7.0)
2019
economiccomplexity : Computational Methods for Economic Complexity (Version 1.5.0)
2019
econullnetr : Null Model Analysis for Ecological Networks (Version 0.2.1)
2017
ecpc : Flexible Co-Data Learning for High-Dimensional Prediction (Version 3.1.1)
2021
edgebundle : Algorithms for Bundling Edges in Networks and Visualizing Flow and Metro Maps (Version 0.4.2)
2021
edgebundleR : Circle Plot with Bundled Edges (Version 0.1.4)
2015
editrules : Parsing, Applying, and Manipulating Data Cleaning Rules (Version 2.9.5)
2011
edmcr : Euclidean Distance Matrix Completion Tools (Version 0.2.0)
2017
eff2 : Efficient Least Squares for Total Causal Effects (Version 1.0.2)
2021
egor : Import and Analyse Ego-Centered Network Data (Version 1.24.2)
2018
eicm : Explicit Interaction Community Models (Version 1.0.3)
2020
einet : Effective Information and Causal Emergence (Version 0.1.0)
2020
enviGCMS : GC/LC-MS Data Analysis for Environmental Science (Version 0.7.1)
2016
epiCo : Statistical and Viz Tools for Vector-Borne Diseases in Colombia (Version 1.0.0)
2024
epicontacts : Handling, Visualisation and Analysis of Epidemiological Contacts (Version 1.1.4)
2017
epigraphdb : Interface Package for the 'EpiGraphDB' Platform (Version 0.2.3)
2020
epinetr : Epistatic Network Modelling with Forward-Time Simulation (Version 0.96)
2020
epiworldR : Fast Agent-Based Epi Models (Version 0.3-2)
2023
erah : Automated Spectral Deconvolution, Alignment, and Metabolite Identification in GC/MS-Based Untargeted Metabolomics (Version 2.0.1)
2016
espadon : Easy Study of Patient DICOM Data in Oncology (Version 1.8.0)
2022
ess : Efficient Stepwise Selection in Decomposable Models (Version 1.1.2)
2017
etree : Classification and Regression with Structured and Mixed-Type Data (Version 0.1.0)
2022
evolqg : Evolutionary Quantitative Genetics (Version 0.3-4)
2015
factoextra : Extract and Visualize the Results of Multivariate Data Analyses (Version 1.0.7)
2016
fairadapt : Fair Data Adaptation with Quantile Preservation (Version 1.0.0)
2019
fake : Flexible Data Simulation Using the Multivariate Normal Distribution (Version 1.4.0)
2022
fakemake : Mock the Unix Make Utility (Version 1.11.1)
2017
fanovaGraph : Building Kriging Models from FANOVA Graphs (Version 1.5)
2011
fasjem : A Fast and Scalable Joint Estimator for Learning Multiple Related Sparse Gaussian Graphical Models (Version 1.1.2)
2017
fastRG : Sample Generalized Random Dot Product Graphs in Linear Time (Version 0.3.2)
2021
fastnet : Large-Scale Social Network Analysis (Version 1.0.0)
2016
fbnet : Forensic Bayesian Networks (Version 1.0.3)
2022
finbipartite : Learning Bipartite Graphs: Heavy Tails and Multiple Components (Version 0.1.0)
2023
finnsurveytext : Analyse Open-Ended Survey Responses in Finnish (Version 2.1.0)
2024
flare : Family of Lasso Regression (Version 1.7.0.2)
2012
fnets : Factor-Adjusted Network Estimation and Forecasting for High-Dimensional Time Series (Version 0.1.6)
2023
foodingraph : Food Network Inference and Visualization (Version 0.1.0)
2019
forestRK : Implements the Forest-R.K. Algorithm for Classification Problems (Version 0.0-5)
2019
fossilbrush : Automated Cleaning of Fossil Occurrence Data (Version 1.0.5)
2022
frechet : Statistical Analysis for Random Objects and Non-Euclidean Data (Version 0.3.0)
2020
fsbrain : Managing and Visualizing Brain Surface Data (Version 0.5.5)
2019
fssemR : Fused Sparse Structural Equation Models to Jointly Infer Gene Regulatory Network (Version 0.1.8)
2019
fullRankMatrix : Generation of Full Rank Design Matrix (Version 0.1.0)
2024
func2vis : Clean and Visualize Over Expression Results from 'ConsensusPathDB' (Version 1.0-3)
2020
functiondepends : Find Functions and their Dependencies (Version 0.2.3)
2020
funspotr : Spot R Functions & Packages (Version 0.0.4)
2023
gRain : Bayesian Networks (Version 1.4.5)
2008
gRbase : A Package for Graphical Modelling in R (Version 2.0.3)
2004
gRc : Inference in Graphical Gaussian Models with Edge and Vertex Symmetries (Version 0.5.1)
2007
gRim : Graphical Interaction Models (Version 0.3.4)
2011
gamCopula : Generalized Additive Models for Bivariate Conditional Dependence Structures and Vine Copulas (Version 0.0-7)
2017
gamlss.ggplots : Plotting Functions for Generalized Additive Model for Location Scale and Shape (Version 2.1-12)
2022
gdistance : Distances and Routes on Geographical Grids (Version 1.6.4)
2011
gemtc : Network Meta-Analysis Using Bayesian Methods (Version 1.0-2)
2012
genBaRcode : Analysis and Visualization Tools for Genetic Barcode Data (Version 1.2.7)
2017
genekitr : Gene Analysis Toolkit (Version 1.2.8)
2021
genlasso : Path Algorithm for Generalized Lasso Problems (Version 1.6.1)
2012
genscore : Generalized Score Matching Estimators (Version 1.0.2.2)
2020
geonetwork : Geographic Networks (Version 0.5.0)
2019
ggdag : Analyze and Create Elegant Directed Acyclic Graphs (Version 0.2.13)
2018
ggenealogy : Visualization Tools for Genealogical Data (Version 1.0.3)
2015
ggflowchart : Flowcharts with 'ggplot2' (Version 1.0.0)
2023
ggm : Graphical Markov Models with Mixed Graphs (Version 2.5.1)
2003
ggnetwork : Geometries to Plot Networks with 'ggplot2' (Version 0.5.13)
2016
ggokabeito : 'Okabe-Ito' Scales for 'ggplot2' and 'ggraph' (Version 0.1.0)
2021
ggraph : An Implementation of Grammar of Graphics for Graphs and Networks (Version 2.2.1)
2017
ggsem : Interactively Visualize Structural Equation Modeling Diagrams (Version 0.1.0)
2024
ggtangle : Draw Network with Data (Version 0.0.4)
2024
ghypernet : Fit and Simulate Generalised Hypergeometric Ensembles of Graphs (Version 1.1.0)
2020
gimme : Group Iterative Multiple Model Estimation (Version 0.7-18)
2014
goat : Gene Set Analysis Using the Gene Set Ordinal Association Test (Version 1.0)
2024
goldfish : Statistical Network Models for Dynamic Network Data (Version 1.6.10)
2022
gor : Algorithms for the Subject Graphs and Network Optimization (Version 1.0)
2023
grainscape : Landscape Connectivity, Habitat, and Protected Area Networks (Version 0.4.4)
2019
grand : Guidelines for Reporting About Network Data (Version 0.9.0)
2023
graph4lg : Build Graphs for Landscape Genetics Analysis (Version 1.8.0)
2019
graphTweets : Visualise Twitter Interactions (Version 0.5.3)
2016
graphclust : Hierarchical Graph Clustering for a Collection of Networks (Version 1.3)
2023
graphicalExtremes : Statistical Methodology for Graphical Extreme Value Models (Version 0.3.2)
2019
graphicalMCP : Graphical Multiple Comparison Procedures (Version 0.2.6)
2024
graphkernels : Graph Kernels (Version 1.6.1)
2017
graphicalVAR : Graphical VAR for Experience Sampling Data (Version 0.3.4)
2015
graphlayouts : Additional Layout Algorithms for Network Visualizations (Version 1.2.0)
2019
graphon : A Collection of Graphon Estimation Methods (Version 0.3.5)
2017
graphsim : Simulate Expression Data from 'igraph' Networks (Version 1.0.3)
2020
greed : Clustering and Model Selection with the Integrated Classification Likelihood (Version 0.6.1)
2021
gromovlab : Gromov-Hausdorff Type Distances for Labeled Metric Spaces (Version 0.8-3)
2015
gsbm : Estimate Parameters in the Generalized SBM (Version 0.2.2)
2020
gtexture : Generalized Application of Co-Occurrence Matrices and Haralick Texture (Version 1.0.0)
2024
habCluster : Detecting Spatial Clustering Based on Connection Cost Between Grids (Version 1.0.5)
2022
handwriter : Handwriting Analysis in R (Version 3.2.1)
2021
hero : Spatio-Temporal (Hero) Sandwich Smoother (Version 0.6)
2018
heterocop : Semi-Parametric Estimation with Gaussian Copula (Version 0.1.0.0)
2024
heteromixgm : Copula Graphical Models for Heterogeneous Mixed Data (Version 2.0.2)
2023
hglasso : Learning Graphical Models with Hubs (Version 1.3)
2014
highcharter : A Wrapper for the 'Highcharts' Library (Version 0.9.4)
2016
hisse : Hidden State Speciation and Extinction (Version 2.1.11)
2015
huge : High-Dimensional Undirected Graph Estimation (Version 1.3.5)
2010
hydra : Hyperbolic Embedding (Version 0.1.0)
2019
iCARH : Integrative Conditional Autoregressive Horseshoe Model (Version 2.0.2.1)
2019
iCellR : Analyzing High-Throughput Single Cell Sequencing Data (Version 1.6.7)
2019
iDINGO : Integrative Differential Network Analysis in Genomics (Version 1.0.4)
2017
iGraphMatch : Tools for Graph Matching (Version 2.0.5)
2021
iPRISM : Intelligent Predicting Response to Cancer Immunotherapy Through Systematic Modeling (Version 0.1.1)
2024
icmstate : Interval Censored Multi-State Models (Version 0.1.1)
2024
icosa : Global Triangular and Penta-Hexagonal Grids Based on Tessellated Icosahedra (Version 0.11.1)
2017
idopNetwork : A Network Tool to Dissect Spatial Community Ecology (Version 0.1.2)
2022
ig.degree.betweenness : "Smith-Pittman Community Detection Algorithm for 'igraph' Objects (2024)" (Version 0.1.0)
0
igraphdata : A Collection of Network Data Sets for the 'igraph' Package (Version 1.0.1)
2012
igraphinshiny : Use 'shiny' to Demo 'igraph' (Version 0.1)
2016
igraphtosonia : Convert iGraph graps to SoNIA .son files (Version 1.0)
2012
igraphwalshdata : 'igraph' Datasets from Melanie Walsh (Version 0.1.0)
2024
imager : Image Processing Library Based on 'CImg' (Version 1.0.2)
2015
immcp : Poly-Pharmacology Toolkit for Traditional Chinese Medicine Research (Version 1.0.3)
2020
immuneSIM : Tunable Simulation of B- And T-Cell Receptor Repertoires (Version 0.8.7)
2019
immunaut : Machine Learning Immunogenicity and Vaccine Response Analysis (Version 1.0.1)
2024
immunarch : Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires (Version 0.9.1)
2020
imsig : Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours (Version 1.1.3)
2018
incidentally : Generates Incidence Matrices and Bipartite Graphs (Version 1.0.2)
2022
industRial : Data, Functions and Support Materials from the Book "industRial Data Science" (Version 0.1.0)
2021
inferCSN : Inferring Cell-Specific Gene Regulatory Network (Version 1.0.8)
2023
influenceR : Software Tools to Quantify Structural Importance of Nodes in a Network (Version 0.1.5)
2015
influential : Identification and Classification of the Most Influential Nodes (Version 2.2.9)
2020
intensitynet : Intensity Analysis of Spatial Point Patterns on Complex Networks (Version 1.4.0)
2022
intergraph : Coercion Routines for Network Data Objects (Version 2.0-4)
2011
interplex : Coercion Methods for Simplicial Complex Data Structures (Version 0.1.2)
2022
invertiforms : Invertible Transforms for Matrices (Version 0.1.1)
2022
isa2 : The Iterative Signature Algorithm (Version 0.3.6)
2009
isotracer : Isotopic Tracer Analysis Using MCMC (Version 1.1.7)
2021
jeek : A Fast and Scalable Joint Estimator for Integrating Additional Knowledge in Learning Multiple Related Sparse Gaussian Graphical Models (Version 1.1.1)
2018
jewel : Graphical Models Estimation from Multiple Sources (Version 2.0.2)
2023
jrSiCKLSNMF : Multimodal Single-Cell Omics Dimensionality Reduction (Version 1.2.1)
2023
jti : Junction Tree Inference (Version 0.8.4)
2020
kangar00 : Kernel Approaches for Nonlinear Genetic Association Regression (Version 1.4.2)
2017
keyplayer : Locating Key Players in Social Networks (Version 1.0.4)
2015
kgraph : Knowledge Graphs Constructions and Visualizations (Version 1.0.0)
2024
kknn : Weighted k-Nearest Neighbors (Version 1.3.1)
2004
klassR : Classifications and Codelists for Statistics Norway (Version 0.2.4)
2019
knitrBootstrap : 'knitr' Bootstrap Framework (Version 1.0.3)
2013
kstMatrix : Basic Functions in Knowledge Space Theory Using Matrix Representation (Version 1.0-1)
2018
l1spectral : An L1-Version of the Spectral Clustering (Version 0.99.6)
2021
latenetwork : Inference on LATEs under Network Interference of Unknown Form (Version 1.0.1)
2023
latrend : A Framework for Clustering Longitudinal Data (Version 1.6.1)
2020
lava : Latent Variable Models (Version 1.8.0)
2012
lavaangui : Graphical User Interface with Integrated 'Diagrammer' for 'Lavaan' (Version 0.2.0)
2024
lconnect : Simple Tools to Compute Landscape Connectivity Metrics (Version 0.1.2)
2019
leastcostpath : Modelling Pathways and Movement Potential Within a Landscape (Version 2.0.12)
2020
leiden : R Implementation of Leiden Clustering Algorithm (Version 0.4.3.1)
2019
leidenAlg : Implements the Leiden Algorithm via an R Interface (Version 1.1.4)
2020
leidenbase : R and C/C++ Wrappers to Run the Leiden find_partition() Function (Version 0.1.31)
2022
lexRankr : Extractive Summarization of Text with the LexRank Algorithm (Version 0.5.2)
2016
lfe : Linear Group Fixed Effects (Version 3.1.0)
2011
linkcomm : Tools for Generating, Visualizing, and Analysing Link Communities in Networks (Version 1.0-14)
2011
linkprediction : Link Prediction Methods (Version 1.0-0)
2018
locits : Test of Stationarity and Localized Autocovariance (Version 1.7.7)
2013
lolog : Latent Order Logistic Graph Models (Version 1.3.1)
2018
mRMRe : Parallelized Minimum Redundancy, Maximum Relevance (mRMR) (Version 2.1.2.2)
2012
macrosyntR : Draw Ordered Oxford Grids and Chord Diagrams (Version 0.3.3)
2023
madrat : May All Data be Reproducible and Transparent (MADRaT) * (Version 3.6.4)
2017
malan : MAle Lineage ANalysis (Version 1.0.3)
2020
manet : Multiple Allocation Model for Actor-Event Networks (Version 2.0)
2017
manymome : Mediation, Moderation and Moderated-Mediation After Model Fitting (Version 0.2.4)
2022
manynet : Many Ways to Make, Modify, Map, Mark, and Measure Myriad Networks (Version 1.3.2)
2023
maotai : Tools for Matrix Algebra, Optimization and Inference (Version 0.2.5)
2019
mappeR : Construct and Visualize TDA Mapper Graphs (Version 1.3.0)
2024
margaret : Scientometric Analysis Minciencias (Version 0.1.4)
2022
markovchain : Easy Handling Discrete Time Markov Chains (Version 0.9.5)
2013
massiveGST : Competitive Gene Sets Test with the Mann-Whitney-Wilcoxon Test (Version 1.2.3)
2022
matrixcut : Determines Clustering Threshold Based on Similarity Values (Version 0.0.1)
2023
mau : Decision Models with Multi Attribute Utility Theory (Version 0.1.2)
2017
maxmatching : Maximum Matching for General Weighted Graph (Version 0.1.0)
2017
mazeGen : Elithorn Maze Generator (Version 0.1.3)
2017
mcMST : A Toolbox for the Multi-Criteria Minimum Spanning Tree Problem (Version 1.1.1)
2017
mcvis : Multi-Collinearity Visualization (Version 1.0.8)
2020
meconetcomp : Compare Microbial Networks of 'trans_network' Class of 'microeco' Package (Version 0.5.1)
2022
metadat : Meta-Analysis Datasets (Version 1.2-0)
2021
metanetwork : Handling and Representing Trophic Networks in Space and Time (Version 0.7.0)
2022
mfpp : 'Matrix-Based Flexible Project Planning' (Version 0.0.7)
2022
microeco : Microbial Community Ecology Data Analysis (Version 1.10.0)
2020
micropan : Microbial Pan-Genome Analysis (Version 2.1)
2014
miic : Learning Causal or Non-Causal Graphical Models Using Information Theory (Version 2.0.3)
2017
miniCRAN : Create a Mini Version of CRAN Containing Only Selected Packages (Version 0.3.0)
2014
missSBM : Handling Missing Data in Stochastic Block Models (Version 1.0.4)
2019
mitre : Cybersecurity MITRE Standards Data and Digraphs (Version 1.0.0)
2020
mlmts : Machine Learning Algorithms for Multivariate Time Series (Version 1.1.2)
2022
mlr3pipelines : Preprocessing Operators and Pipelines for 'mlr3' (Version 0.7.0)
2019
mlr3shiny : Machine Learning in 'shiny' with 'mlr3' (Version 0.3.0)
2020
mlr3torch : Deep Learning with 'mlr3' (Version 0.1.2)
2024
mmibain : Bayesian Informative Hypotheses Evaluation Web Applications (Version 0.2.0)
2023
mnda : Multiplex Network Differential Analysis (MNDA) (Version 1.0.9)
2023
modMax : Community Structure Detection via Modularity Maximization (Version 1.1)
2015
modelbpp : Model BIC Posterior Probability (Version 0.1.5)
2023
modnets : Modeling Moderated Networks (Version 0.9.0)
2021
moranajp : Morphological Analysis for Japanese (Version 0.9.7)
2022
morph : 3D Segmentation of Voxels into Morphologic Classes (Version 1.1.0)
2021
motifcluster : Motif-Based Spectral Clustering of Weighted Directed Networks (Version 0.2.3)
2020
motifr : Motif Analysis in Multi-Level Networks (Version 1.0.0)
2020
movementsync : Analysis and Visualisation of Musical Audio and Video Movement Synchrony Data (Version 0.1.4)
2023
mppR : Multi-Parent Population QTL Analysis (Version 1.5.0)
2018
mstknnclust : MST-kNN Clustering Algorithm (Version 0.3.2)
2019
mully : Create, Modify and Visualize Multi-Layered Networks (Version 2.1.38)
2020
multichull : A Generic Convex-Hull-Based Model Selection Method (Version 3.0.0)
2017
multilaterals : Transitive Index Numbers for Cross-Sections and Panel Data (Version 1.0)
2017
multilink : Multifile Record Linkage and Duplicate Detection (Version 0.1.1)
2023
multinet : Analysis and mining of multilayer social networks (Version 4.2.1)
2017
multinets : Multilevel Networks Analysis (Version 0.2.2)
2017
multinma : Bayesian Network Meta-Analysis of Individual and Aggregate Data (Version 0.7.2)
2020
multivariance : Measuring Multivariate Dependence Using Distance Multivariance (Version 2.4.1)
2017
mwTensor : Multi-Way Component Analysis (Version 1.1.0)
2021
mwcsr : Solvers for Maximum Weight Connected Subgraph Problem and Its Variants (Version 0.1.9)
2021
mycaas : My Computerized Adaptive Assessment (Version 0.0.1)
2024
nat : NeuroAnatomy Toolbox for Analysis of 3D Image Data (Version 1.8.24)
2014
nat.templatebrains : NeuroAnatomy Toolbox ('nat') Extension for Handling Template Brains (Version 1.1)
2014
nbTransmission : Naive Bayes Transmission Analysis (Version 1.1.4)
2020
nda : Generalized Network-Based Dimensionality Reduction and Analysis (Version 0.1.15)
2022
neat : Efficient Network Enrichment Analysis Test (Version 1.2.4)
2016
neatmaps : Heatmaps for Multiple Network Data (Version 2.1.0)
2017
neo4r : A 'Neo4J' Driver (Version 0.1.1)
2019
net4pg : Handle Ambiguity of Protein Identifications from Shotgun Proteomics (Version 0.1.1)
2021
netCoin : Interactive Analytic Networks (Version 2.0.84)
2016
netShiny : Tool for Comparison and Visualization of Multiple Networks (Version 1.0)
2022
netUtils : A Collection of Tools for Network Analysis (Version 0.8.3)
2022
netassoc : Inference of Species Associations from Co-Occurrence Data (Version 0.7.0)
2015
netcmc : Spatio-Network Generalised Linear Mixed Models for Areal Unit and Network Data (Version 1.0.2)
2022
netcom : NETwork COMparison Inference (Version 2.1.7)
2017
netdiffuseR : Analysis of Diffusion and Contagion Processes on Networks (Version 1.22.6)
2016
netgwas : Network-Based Genome Wide Association Studies (Version 1.14.3)
2017
netgsa : Network-Based Gene Set Analysis (Version 4.0.5)
2014
netmap : Represent Network Objects on a Map (Version 0.1.4)
2022
netmediate : Micro-Macro Analysis for Social Networks (Version 1.0.1)
2022
netmeta : Network Meta-Analysis using Frequentist Methods (Version 2.9-0)
2013
netplot : Beautiful Graph Drawing (Version 0.3-0)
2021
netrankr : Analyzing Partial Rankings in Networks (Version 1.2.3)
2018
netropy : Statistical Entropy Analysis of Network Data (Version 0.2.0)
2022
nets : Network Estimation for Time Series (Version 0.9.1)
2013
netseg : Measures of Network Segregation and Homophily (Version 1.0-2)
2021
netseer : Graph Prediction from a Graph Time Series (Version 0.1.0)
2024
nett : Network Analysis and Community Detection (Version 1.0.0)
2022
networkD3 : D3 JavaScript Network Graphs from R (Version 0.4)
2014
networkGen : Network Maze Generator (Version 0.1.1)
2017
networktools : Tools for Identifying Important Nodes in Networks (Version 1.5.2)
2017
nevada : Network-Valued Data Analysis (Version 0.2.0)
2021
nexus : Sourcing Archaeological Materials by Chemical Composition (Version 0.3.0)
2023
nimble : MCMC, Particle Filtering, and Programmable Hierarchical Modeling (Version 1.2.1)
2016
nlnet : Nonlinear Network, Clustering, and Variable Selection Based on DCOL (Version 1.4)
2015
nlrx : Setup, Run and Analyze 'NetLogo' Model Simulations from 'R' via 'XML' (Version 0.4.5)
2019
nncc : Nearest Neighbors Matching of Case-Control Data (Version 2.0.0)
2022
node2vec : Algorithmic Framework for Representational Learning on Graphs (Version 0.1.0)
2021
noisysbmGGM : Noisy Stochastic Block Model for GGM Inference (Version 0.1.2.3)
2024
nosoi : A Forward Agent-Based Transmission Chain Simulator (Version 1.1.2)
2020
numbat : Haplotype-Aware CNV Analysis from scRNA-Seq (Version 1.4.2)
2022
nutriNetwork : Structure Learning with Copula Graphical Model (Version 0.1.2)
2019
oaqc : Computation of the Orbit-Aware Quad Census (Version 2.0.0)
2017
oddnet : Anomaly Detection in Temporal Networks (Version 0.1.1)
2022
ohun : Optimizing Acoustic Signal Detection (Version 1.0.2)
2022
optbdmaeAT : Optimal Block Designs for Two-Colour cDNA Microarray Experiments (Version 1.0.1)
2017
optrcdmaeAT : Optimal Row-Column Designs for Two-Colour cDNA Microarray Experiments (Version 1.0.0)
2017
orthGS : Orthology vs Paralogy Relationships among Glutamine Synthetase from Plants (Version 0.1.5)
2024
outbreaker2 : Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data (Version 1.1.3)
2017
pGRN : Single-Cell RNA Sequencing Pseudo-Time Based Gene Regulatory Network Inference (Version 0.3.5)
2023
pagoda2 : Single Cell Analysis and Differential Expression (Version 1.0.12)
2021
pald : Partitioned Local Depth for Community Structure in Data (Version 0.0.4)
2022
paramlink : Parametric Linkage and Other Pedigree Analysis in R (Version 1.1-5)
2011
parsec : Partial Orders in Socio-Economics (Version 1.2.7)
2015
particles : A Graph Based Particle Simulator Based on D3-Force (Version 0.2.3)
2018
pathfindR : Enrichment Analysis Utilizing Active Subnetworks (Version 2.4.1)
2018
pcFactorStan : Stan Models for the Paired Comparison Factor Model (Version 1.5.4)
2019
pcSteiner : Convenient Tool for Solving the Prize-Collecting Steiner Tree Problem (Version 1.0.0.1)
2020
pcalg : Methods for Graphical Models and Causal Inference (Version 2.7-12)
2006
pcvr : Plant Phenotyping and Bayesian Statistics (Version 1.1.1.0)
2024
pcutils : Some Useful Functions for Statistics and Visualization (Version 0.2.6)
2023
pedtools : Creating and Working with Pedigrees and Marker Data (Version 2.7.1)
2019
pedtricks : Visualize, Summarize and Simulate Data from Pedigrees (Version 0.4.2)
2024
pencopulaCond : Estimating Non-Simplified Vine Copulas Using Penalized Splines (Version 0.2)
2017
perturbR : Random Perturbation of Count Matrices (Version 0.1.3)
2017
phangorn : Phylogenetic Reconstruction and Analysis (Version 2.12.1)
2008
phylepic : Combined Visualisation of Phylogenetic and Epidemiological Data (Version 0.2.0)
2024
phyloTop : Calculating Topological Properties of Phylogenies (Version 2.1.2)
2013
phylopath : Perform Phylogenetic Path Analysis (Version 1.3.0)
2016
phyloregion : Biogeographic Regionalization and Macroecology (Version 1.0.8)
2020
phyloseqGraphTest : Graph-Based Permutation Tests for Microbiome Data (Version 0.1.1)
2018
phylosignal : Exploring the Phylogenetic Signal in Continuous Traits (Version 1.3.1)
2015
piecewiseSEM : Piecewise Structural Equation Modeling (Version 2.3.0.1)
2015
pkggraph : A Consistent and Intuitive Platform to Explore the Dependencies of Packages on the Comprehensive R Archive Network Like Repositories (Version 0.2.3)
2017
pkgndep : Analyze Dependency Heaviness of R Packages (Version 1.99.3)
2020
pkgnet : Get Network Representation of an R Package (Version 0.5.0)
2018
plantTracker : Extract Demographic and Competition Data from Fine-Scale Maps (Version 1.1.0)
2023
plinkQC : Genotype Quality Control with 'PLINK' (Version 0.3.4)
2018
plotthis : High-Level Plotting Built Upon 'ggplot2' and Other Plotting Packages (Version 0.3.6)
2024
pmd : Paired Mass Distance Analysis for GC/LC-MS Based Non-Targeted Analysis and Reactomics Analysis (Version 0.2.1)
2018
polmineR : Verbs and Nouns for Corpus Analysis (Version 0.8.9)
2016
polymapR : Linkage Analysis in Outcrossing Polyploids (Version 1.1.6)
2017
polyqtlR : QTL Analysis in Autopolyploid Bi-Parental F1 Populations (Version 0.1.1)
2020
pomdp : Infrastructure for Partially Observable Markov Decision Processes (POMDP) (Version 1.2.3)
2018
pop : A Flexible Syntax for Population Dynamic Modelling (Version 0.1)
2016
poppr : Genetic Analysis of Populations with Mixed Reproduction (Version 2.9.6)
2013
postHoc : Tools for Post-Hoc Analysis (Version 0.1.3)
2020
primer : Functions and Data for the Book, a Primer of Ecology with R (Version 1.2.0)
2009
priorCON : Graph Community Detection Methods into Systematic Conservation Planning (Version 0.1.2)
2024
prioritizr : Systematic Conservation Prioritization in R (Version 8.0.4)
2016
protti : Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools (Version 0.9.1)
2021
provGraphR : Creates Adjacency Matrices for Lineage Searches (Version 1.0.1)
2020
psSubpathway : Flexible Identification of Phenotype-Specific Subpathways (Version 0.1.3)
2019
ptools : Tools for Poisson Data (Version 2.0.0)
2022
qtlnet : Causal Inference of QTL Networks (Version 1.5.4)
2012
quanteda.textplots : Plots for the Quantitative Analysis of Textual Data (Version 0.95)
2020
rD3plot : Interactive Networks, Timelines, Barplots, Galleries with 'D3.js' (Version 1.1.21)
2021
rEMM : Extensible Markov Model for Modelling Temporal Relationships Between Clusters (Version 1.2.1)
2010
rIsing : High-Dimensional Ising Model Selection (Version 0.1.0)
2016
rPref : Database Preferences and Skyline Computation (Version 1.4.0)
2014
rSDI : Spatial Dispersion Index (SDI) Family of Metrics for Spatial/Geographic Networks (Version 0.2.1)
2024
rSpectral : Spectral Modularity Clustering (Version 1.0.0.10)
2022
rTwig : Realistic Quantitative Structure Models (Version 1.2.0)
2024
rags2ridges : Ridge Estimation of Precision Matrices from High-Dimensional Data (Version 2.2.7)
2014
rangeMapper : A Platform for the Study of Macro-Ecology of Life History Traits (Version 2.0.3)
2010
raster : Geographic Data Analysis and Modeling (Version 3.6-30)
2010
rbmn : Handling Linear Gaussian Bayesian Networks (Version 0.9-6)
2013
rcausim : Generate Causally-Simulated Data (Version 0.1.1)
2024
rcrimeanalysis : An Implementation of Crime Analysis Methods (Version 0.5.0)
2019
rdracor : Access to the 'DraCor' API (Version 1.0.4)
2023
readsdr : Translate Models from System Dynamics Software into 'R' (Version 0.3.0)
2020
recipes : Preprocessing and Feature Engineering Steps for Modeling (Version 1.1.0)
2017
regmed : Regularized Mediation Analysis (Version 2.1.0)
2020
regnet : Network-Based Regularization for Generalized Linear Models (Version 1.0.1)
2017
remify : Processing and Transforming Relational Event History Data (Version 3.2.6)
2023
repo : A Data-Centered Data Flow Manager (Version 2.1.5)
2015
rflexscan : The Flexible Spatial Scan Statistic (Version 1.1.0)
2019
rgexf : Build, Import, and Export GEXF Graph Files (Version 0.16.3)
2012
rgraph6 : Representing Graphs as 'graph6', 'digraph6' or 'sparse6' Strings (Version 2.0-4)
2022
rhcoclust : Robust Hierarchical Co-Clustering to Identify Significant Co-Cluster (Version 2.0.0)
2020
riverconn : Fragmentation and Connectivity Indices for Riverscapes (Version 0.3.31)
2022
rmcfs : The MCFS-ID Algorithm for Feature Selection and Interdependency Discovery (Version 1.3.6)
2016
rnaCrosslinkOO : Analysis of RNA Crosslinking Data (Version 0.1.4)
2024
rnetcarto : Fast Network Modularity and Roles Computation by Simulated Annealing (Rgraph C Library Wrapper for R) (Version 0.2.6)
2015
rnmamod : Bayesian Network Meta-Analysis with Missing Participants (Version 0.4.0)
2021
roads : Road Network Projection (Version 1.2.0)
2022
robber : Using Block Model to Estimate the Robustness of Ecological Network (Version 0.2.4)
2021
robin : ROBustness in Network (Version 1.2.0)
2019
robustrao : An Extended Rao-Stirling Diversity Index to Handle Missing Data (Version 1.0-5)
2016
roots : Reconstructing Ordered Ontogenic Trajectories (Version 1.0)
2017
roughnet : Visualize Networks using 'roughjs' (Version 1.0.1)
2022
rquery : Relational Query Generator for Data Manipulation at Scale (Version 1.4.99)
2018
rscc : R Source Code Similarity Evaluation by Variable/Function Names (Version 0.2.1)
2021
rsetse : Strain Elevation Tension Spring Embedding (Version 0.5.0)
2020
rsppfp : R's Shortest Path Problem with Forbidden Subpaths (Version 1.0.4)
2018
rsyntax : Extract Semantic Relations from Text by Querying and Reshaping Syntax (Version 0.1.4)
2020
rtweet : Collecting Twitter Data (Version 2.0.0)
2016
rviewgraph : Animated Graph Layout Viewer (Version 1.4.2)
2018
rvinecopulib : High Performance Algorithms for Vine Copula Modeling (Version 0.6.3.1.1)
2017
sBIC : Computing the Singular BIC for Multiple Models (Version 0.2.0)
2016
sand : Statistical Analysis of Network Data with R, 2nd Edition (Version 2.0.0)
2014
saotd : Sentiment Analysis of Twitter Data (Version 0.3.1)
2019
satdad : Sensitivity Analysis Tools for Dependence and Asymptotic Dependence (Version 1.1)
2023
sbm : Stochastic Blockmodels (Version 0.4.7)
2020
scDHA : Single-Cell Decomposition using Hierarchical Autoencoder (Version 1.2.2)
2021
scDiffCom : Differential Analysis of Intercellular Communication from scRNA-Seq Data (Version 1.0.0)
2021
scINSIGHT : Interpretation of Heterogeneous Single-Cell Gene Expression Data (Version 0.1.4)
2021
scRNAtools : Single Cell RNA Sequencing Data Analysis Tools (Version 1.0)
2018
scalpel : Processes Calcium Imaging Data (Version 1.0.3)
2017
scapGNN : Graph Neural Network-Based Framework for Single Cell Active Pathways and Gene Modules Analysis (Version 0.1.4)
2022
sccore : Core Utilities for Single-Cell RNA-Seq (Version 1.0.5)
2020
scistreer : Maximum-Likelihood Perfect Phylogeny Inference at Scale (Version 1.2.0)
2022
scoredec : S-Core Graph Decomposition (Version 0.1.1)
2024
secr : Spatially Explicit Capture-Recapture (Version 5.1.0)
2010
secrlinear : Spatially Explicit Capture-Recapture for Linear Habitats (Version 1.2.4)
2014
secuTrialR : Handling of Data from the Clinical Data Management System 'secuTrial' (Version 1.3.3)
2020
semPlot : Path Diagrams and Visual Analysis of Various SEM Packages' Output (Version 1.1.6)
2013
sensitivity : Global Sensitivity Analysis of Model Outputs and Importance Measures (Version 1.30.1)
2006
seqHMM : Mixture Hidden Markov Models for Social Sequence Data and Other Multivariate, Multichannel Categorical Time Series (Version 1.2.6)
2015
seqtrie : Radix Tree and Trie-Based String Distances (Version 0.2.8)
2023
sfcr : Simulate Stock-Flow Consistent Models (Version 0.2.1)
2021
sfcurve : 2x2, 3x3 and Nxn Space-Filling Curves (Version 1.0.0)
2024
sfdep : Spatial Dependence for Simple Features (Version 0.2.5)
2022
sfnetworks : Tidy Geospatial Networks (Version 0.6.4)
2021
sglasso : Lasso Method for RCON(V,E) Models (Version 1.2.6)
2014
sgraph : Network Visualization Using 'sigma.js' (Version 1.1.0)
2024
sharp : Stability-enHanced Approaches using Resampling Procedures (Version 1.4.6)
2022
sharpshootR : A Soil Survey Toolkit (Version 2.3.2)
2014
shazam : Immunoglobulin Somatic Hypermutation Analysis (Version 1.2.0)
2016
shinyWGD : 'Shiny' Application for Whole Genome Duplication Analysis (Version 1.0.0)
0
shock : Slope Heuristic for Block-Diagonal Covariance Selection in High Dimensional Gaussian Graphical Models (Version 1.0)
2015
shp2graph : Convert a 'SpatialLinesDataFrame' -Class Object to an 'igraph'-Class Object (Version 1-0)
2014
sidier : Substitution and Indel Distances to Infer Evolutionary Relationships (Version 4.1.0)
2013
sigmajs : Interface to 'Sigma.js' Graph Visualization Library (Version 0.1.5)
2018
signnet : Methods to Analyse Signed Networks (Version 1.0.4)
2020
simDAG : Simulate Data from a DAG and Associated Node Information (Version 0.2.0)
2023
simcausal : Simulating Longitudinal Data with Causal Inference Applications (Version 0.5.7)
2015
simdata : Generate Simulated Datasets (Version 0.4.0)
2024
simer : Data Simulation for Life Science and Breeding (Version 0.9.0.5)
2022
simplifyNet : Network Sparsification (Version 0.0.1)
2022
simule : A Constrained L1 Minimization Approach for Estimating Multiple Sparse Gaussian or Nonparanormal Graphical Models (Version 1.3.0)
2017
sindyr : Sparse Identification of Nonlinear Dynamics (Version 0.2.4)
2018
sirt : Supplementary Item Response Theory Models (Version 4.1-15)
2013
smallstuff : Dr. Small's Functions (Version 1.0.3)
2022
smotefamily : A Collection of Oversampling Techniques for Class Imbalance Problem Based on SMOTE (Version 1.4.0)
2016
snahelper : 'RStudio' Addin for Network Analysis and Visualization (Version 1.4.2)
2019
snowboot : Bootstrap Methods for Network Inference (Version 1.0.2)
2015
solitude : An Implementation of Isolation Forest (Version 1.1.3)
2018
soptdmaeA : Sequential Optimal Designs for Two-Colour cDNA Microarray Experiments (Version 1.0.0)
2017
spacejamr : Simulate Spatial Bernoulli Networks (Version 0.2.1)
2021
spatialreg : Spatial Regression Analysis (Version 1.3-5)
2019
spatsoc : Group Animal Relocation Data by Spatial and Temporal Relationship (Version 0.2.2)
2018
spdep : Spatial Dependence: Weighting Schemes, Statistics (Version 1.3-6)
2002
spdynmod : Spatio-Dynamic Wetland Plant Communities Model (Version 1.1.6)
2014
speakeasyR : Fast and Robust Multi-Scale Graph Clustering (Version 0.1.4)
2024
specr : Conducting and Visualizing Specification Curve Analyses (Version 1.0.0)
2020
spectralGraphTopology : Learning Graphs from Data via Spectral Constraints (Version 0.2.3)
2019
spinner : An Implementation of Graph Net Architecture Based on 'torch' (Version 1.1.0)
2023
spreadr : Simulating Spreading Activation in a Network (Version 0.2.0)
2018
ssMutPA : Single-Sample Mutation-Based Pathway Analysis (Version 0.1.2)
2024
ssifs : Stochastic Search Inconsistency Factor Selection (Version 1.0.2)
2023
stabm : Stability Measures for Feature Selection (Version 1.2.2)
2019
stagedtrees : Staged Event Trees (Version 2.3.0)
2019
statGraph : Statistical Methods for Graphs (Version 1.0.6)
2017
stemmatology : Stemmatological Analysis of Textual Traditions (Version 0.3.2)
2018
stm : Estimation of the Structural Topic Model (Version 1.3.7)
2014
stminsights : A 'Shiny' Application for Inspecting Structural Topic Models (Version 0.4.3)
2018
stplanr : Sustainable Transport Planning (Version 1.2.2)
2015
streamDAG : Analytical Methods for Stream DAGs (Version 1.5)
2023
surface : Fitting Hansen Models to Investigate Convergent Evolution (Version 0.6)
2013
surveygraph : Network Representations of Attitudes (Version 0.1.2)
2024
svs : Tools for Semantic Vector Spaces (Version 3.1.1)
2015
targets : Dynamic Function-Oriented 'Make'-Like Declarative Pipelines (Version 1.8.0)
2021
text2map : R Tools for Text Matrices, Embeddings, and Networks (Version 0.2.0)
2021
textmineR : Functions for Text Mining and Topic Modeling (Version 3.0.5)
2015
textplot : Text Plots (Version 0.2.2)
2020
textrank : Summarize Text by Ranking Sentences and Finding Keywords (Version 0.3.1)
2017
tgver : Turing Geovisualization Engine R package (Version 0.3.0)
2022
threejs : Interactive 3D Scatter Plots, Networks and Globes (Version 0.3.3)
2015
tidySEM : Tidy Structural Equation Modeling (Version 0.2.7)
2020
tidygraph : A Tidy API for Graph Manipulation (Version 1.3.1)
2017
tidyjson : Tidy Complex 'JSON' (Version 0.3.2)
2015
tilemaps : Generate Tile Maps (Version 0.2.0)
2020
timeordered : Time-Ordered and Time-Aggregated Network Analyses (Version 1.0.1)
2011
tip : Bayesian Clustering Using the Table Invitation Prior (TIP) (Version 0.1.0)
2022
tnet : Weighted, Two-Mode, and Longitudinal Networks Analysis (Version 3.0.16)
2009
topologyGSA : Gene Set Analysis Exploiting Pathway Topology (Version 1.5.0)
2011
tosr : Create the Tree of Science from WoS and Scopus (Version 0.1.4)
2021
treefit : The First Software for Quantitative Trajectory Inference (Version 1.0.2)
2020
treemap : Treemap Visualization (Version 2.4-4)
2010
treespace : Statistical Exploration of Landscapes of Phylogenetic Trees (Version 1.1.4.3)
2017
treestats : Phylogenetic Tree Statistics (Version 1.70.5)
2024
visNetwork : Network Visualization using 'vis.js' Library (Version 2.1.2)
2015
vivainsights : Analyze and Visualize Data from 'Microsoft Viva Insights' (Version 0.5.4)
2022
vivid : Variable Importance and Variable Interaction Displays (Version 0.2.9)
2021
vkR : Access to VK API via R (Version 0.2)
2016
vocaldia : Create and Manipulate Vocalisation Diagrams (Version 0.8.4)
2017
vosonSML : Collecting Social Media Data and Generating Networks for Analysis (Version 0.32.7)
2018
vsp : Vintage Sparse PCA for Semi-Parametric Factor Analysis (Version 0.1.2)
2022
wTO : Computing Weighted Topological Overlaps (wTO) & Consensus wTO Network (Version 2.1)
2017
wdnet : Weighted and Directed Networks (Version 1.2.3)
2022
webSDM : Including Known Interactions in Species Distribution Models (Version 1.1-5)
2022
wfg : Weighted Fast Greedy Algorithm (Version 0.1)
2016
whitechapelR : Advanced Policing Techniques for the Board Game "Letters from Whitechapel" (Version 0.3.0)
2018
whomds : Calculate Results from WHO Model Disability Survey Data (Version 1.1.1)
2021
widyr : Widen, Process, then Re-Tidy Data (Version 0.1.5)
2017
wikkitidy : Tidy Analysis of Wikipedia (Version 0.1.13)
2023
wildlifeDI : Calculate Indices of Dynamic Interaction for Wildlife Tracking Data (Version 1.0.0)
2014
wpa : Tools for Analysing and Visualising Viva Insights Data (Version 1.9.1)
2021
xLLiM : High Dimensional Locally-Linear Mapping (Version 2.3)
2016
xgboost : Extreme Gradient Boosting (Version 1.7.8.1)
2014
xtranat : Network Metrics Based on Random Walks (Version 0.1.0)
2023
zoomerjoin : Superlatively Fast Fuzzy Joins (Version 0.2.0)
2024
Showing 1-959 of 959
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Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.
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