R Package Scholar
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numDeriv: Accurate Numerical Derivatives

Paul Gilbert  Ravi Varadhan   View description and downloadsView dependenciesGitHub project

2006 Published
2016.8-1.1 Version
0 Citations
2 Authors
Referenced by ⇅ Year
BiProbitPartial: Bivariate Probit with Partial Observability (Version 1.0.3)

2019
coxphMIC: Sparse Estimation of Cox Proportional Hazards Models via Approximated Information Criterion (Version 0.1.0)

2017
Disequilibrium: Disequilibrium Models (Version 1.1)

2020
DOBAD: Analysis of Discretely Observed Linear Birth-and-Death(-and-Immigration) Markov Chains (Version 1.0.6)

2012
misreport: Statistical Analysis of Misreporting on Sensitive Survey Questions (Version 0.1.1)

2016
optimr: A Replacement and Extension of the "optim" Function (Version 2019-12.16)

2016
Rcgmin: Conjugate Gradient Minimization of Nonlinear Functions with Box Constraints (Version 2022-4.30)

2010
SACOBRA: Self-Adjusting COBRA (Version 1.2)

2015
SIfEK: Statistical Inference for Enzyme Kinetics (Version 0.1.0)

2018
stochprofML: Stochastic Profiling using Maximum Likelihood Estimation (Version 2.0.3)

2014
surf: Survey-Based Gross Flows Estimation (Version 1.0.0)

2021
ThreeArmedTrials: Design and Analysis of Clinical Non-Inferiority or Superiority Trials with Active and Placebo Control (Version 1.0-4)

2015
touchard: Touchard Model and Regression (Version 2.0.1)

2018
trajeR: Group Based Modeling Trajectory (Version 0.9.0.5)

2022
IGP: Interchangeable Gaussian Process Models (Version 0.2.1)

2017
pedmod: Pedigree Models (Version 0.2.4)

2021
clusteredinterference: Causal Effects from Observational Studies with Clustered Interference (Version 1.0.1)

2018
GauPro: Gaussian Process Fitting (Version 0.2.12)

2016
RealVAMS: Multivariate VAM Fitting (Version 0.4-6)

2014
Renext: Renewal Method for Extreme Values Extrapolation (Version 3.1-4)

2010
RobinCar: Robust Estimation and Inference in Covariate-Adaptive Randomization (Version 0.3.0)

2024
Rphylopars: Phylogenetic Comparative Tools for Missing Data and Within-Species Variation (Version 0.3.10)

2015
SAMtool: Stock Assessment Methods Toolkit (Version 1.7.0)

2021
SGB: Simplicial Generalized Beta Regression (Version 1.0.1.1)

2019
ARCensReg: Fitting Univariate Censored Linear Regression Model with Autoregressive Errors (Version 3.0.1)

2016
ARpLMEC: Censored Mixed-Effects Models with Different Correlation Structures (Version 2.4.1)

2019
AcceptReject: Acceptance-Rejection Method for Generating Pseudo-Random Observations (Version 0.1.2)

2024
AssetCorr: Estimating Asset Correlations from Default Data (Version 1.0.4)

2018
BAMBI: Bivariate Angular Mixture Models (Version 2.3.5)

2017
BB: Solving and Optimizing Large-Scale Nonlinear Systems (Version 2019.10-1)

2008
BEKKs: Multivariate Conditional Volatility Modelling and Forecasting (Version 1.4.4)

2022
BIGL: Biochemically Intuitive Generalized Loewe Model (Version 1.9.3)

2017
BLA: Boundary Line Analysis (Version 1.0.1)

2024
BLPestimatoR: Performs a BLP Demand Estimation (Version 0.3.4)

2017
BayesianTools: General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics (Version 0.1.8)

2017
BinaryEPPM: Mean and Scale-Factor Modeling of Under- And Over-Dispersed Binary Data (Version 3.0)

2015
CBPS: Covariate Balancing Propensity Score (Version 0.23)

2012
CIAAWconsensus: Isotope Ratio Meta-Analysis (Version 1.3)

2016
CLVTools: Tools for Customer Lifetime Value Estimation (Version 0.11.0)

2020
COMPoissonReg: Conway-Maxwell Poisson (COM-Poisson) Regression (Version 0.8.1)

2010
CensSpatial: Censored Spatial Models (Version 3.6)

2016
ClusROC: ROC Analysis in Three-Class Classification Problems for Clustered Data (Version 1.0.2)

2022
CompAREdesign: Statistical Functions for the Design of Studies with Composite Endpoints (Version 2.3.1)

2020
CompDist: Multisection Composite Distributions (Version 1.0)

2017
Countr: Flexible Univariate Count Models Based on Renewal Processes (Version 3.5.8)

2016
CountsEPPM: Mean and Variance Modeling of Count Data (Version 3.1)

2013
DEBBI: Differential Evolution-Based Bayesian Inference (Version 0.1.0)

2022
DIMORA: Diffusion Models R Analysis (Version 0.3.6)

2018
DNAmixturesLite: Statistical Inference for Mixed Traces of DNA (Lite-Version) (Version 0.0-1)

2023
DiceKriging: Kriging Methods for Computer Experiments (Version 1.6.0)

2010
DoseFinding: Planning and Analyzing Dose Finding Experiments (Version 1.2-1)

2010
DoubleExpSeq: Differential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter (Version 1.1)

2014
EKMCMC: MCMC Procedures for Estimating Enzyme Kinetics Constants (Version 1.1.2)

2017
EWS: Early Warning System (Version 0.2.0)

2020
EffectLiteR: Average and Conditional Effects (Version 0.5-1)

2015
Epi: Statistical Analysis in Epidemiology (Version 2.53)

2005
EstimationTools: Maximum Likelihood Estimation for Probability Functions from Data Sets (Version 4.0.0)

2019
EventPredInCure: Event Prediction Including Cured Population (Version 1.0)

2024
ExtDist: Extending the Range of Functions for Probability Distributions (Version 0.7-2)

2014
ExtremalDep: Extremal Dependence Models (Version 0.0.4-1)

2019
FENmlm: Fixed Effects Nonlinear Maximum Likelihood Models (Version 2.4.4)

2015
FMCCSD: Efficient Estimation of Clustered Current Status Data (Version 1.0)

2020
GAS: Generalized Autoregressive Score Models (Version 0.3.4.1)

2016
GB2: Generalized Beta Distribution of the Second Kind: Properties, Likelihood, Estimation (Version 2.1.1)

2011
GB2group: Estimation of the Generalised Beta Distribution of the Second Kind from Grouped Data (Version 0.3.0)

2018
GDILM.ME: Spatial Modeling of Infectious Diseases with Co-Variate Error (Version 1.2.1)

2024
GDILM.SIR: Inference for Infectious Disease Transmission in SIR Framework (Version 1.2.1)

2024
GDINA: The Generalized DINA Model Framework (Version 2.9.4)

2016
GGMncv: Gaussian Graphical Models with Nonconvex Regularization (Version 2.1.1)

2020
GJRM: Generalised Joint Regression Modelling (Version 0.2-6.5)

2017
GPvam: Maximum Likelihood Estimation of Multiple Membership Mixed Models Used in Value-Added Modeling (Version 3.1-0)

2012
GeoModels: Procedures for Gaussian and Non Gaussian Geostatistical (Large) Data Analysis (Version 2.0.4)

2022
HDBRR: High Dimensional Bayesian Ridge Regression without MCMC (Version 1.1.4)

2021
HydroPortailStats: 'HydroPortail' Statistical Functions (Version 1.1.0)

2023
ICcalib: Cox Model with Interval-Censored Starting Time of a Covariate (Version 1.0.8)

2018
INLAjoint: Multivariate Joint Modeling for Longitudinal and Time-to-Event Outcomes with 'INLA' (Version 24.3.25)

2023
IPEC: Root Mean Square Curvature Calculation (Version 1.1.0)

2017
Infusion: Inference Using Simulation (Version 2.1.0)

2016
IsoriX: Isoscape Computation and Inference of Spatial Origins using Mixed Models (Version 0.9.2)

2016
KinMixLite: Inference About Relationships from DNA Mixtures (Version 2.1.0)

2023
LAM: Some Latent Variable Models (Version 0.7-22)

2017
LMMstar: Repeated Measurement Models for Discrete Times (Version 1.1.0)

2021
LMN: Inference for Linear Models with Nuisance Parameters (Version 1.1.3)

2022
LambertW: Probabilistic Models to Analyze and Gaussianize Heavy-Tailed, Skewed Data (Version 0.6.9-1)

2009
LogisticCopula: A Copula Based Extension of Logistic Regression (Version 0.1.0)

2024
LoopDetectR: Comprehensive Feedback Loop Detection in ODE Models (Version 0.1.2)

2020
MAZE: Mediation Analysis for Zero-Inflated Mediators (Version 0.0.2)

2023
MIIVsem: Model Implied Instrumental Variable (MIIV) Estimation of Structural Equation Models (Version 0.5.8)

2015
MNB: Diagnostic Tools for a Multivariate Negative Binomial Model (Version 1.1.0)

2021
MPTinR: Analyze Multinomial Processing Tree Models (Version 1.14.1)

2011
MSGARCH: Markov-Switching GARCH Models (Version 2.51)

2016
MSTest: Hypothesis Testing for Markov Switching Models (Version 0.1.2)

2022
MendelianRandomization: Mendelian Randomization Package (Version 0.10.0)

2016
MetricGraph: Random Fields on Metric Graphs (Version 1.3.0)

2023
MixGHD: Model Based Clustering, Classification and Discriminant Analysis Using the Mixture of Generalized Hyperbolic Distributions (Version 2.3.7)

2014
MixtureMissing: Robust and Flexible Model-Based Clustering for Data Sets with Missing Values at Random (Version 3.0.2)

2021
NFCP: N-Factor Commodity Pricing Through Term Structure Estimation (Version 1.2.1)

2021
NMMIPW: Inverse Probability Weighting under Non-Monotone Missing (Version 0.1.0)

2021
NSAE: Nonstationary Small Area Estimation (Version 0.4.0)

2021
OUwie: Analysis of Evolutionary Rates in an OU Framework (Version 2.10)

2011
OneStep: One-Step Estimation (Version 0.9.3)

2020
OpenMx: Extended Structural Equation Modelling (Version 2.21.12)

2015
PLmixed: Estimate (Generalized) Linear Mixed Models with Factor Structures (Version 0.1.7)

2017
PROreg: Patient Reported Outcomes Regression Analysis (Version 1.3)

2017
PSweight: Propensity Score Weighting for Causal Inference with Observational Studies and Randomized Trials (Version 1.2.0)

2020
PTSR: Positive Time Series Regression (Version 0.1.2)

2022
PenIC: Semiparametric Regression Analysis of Interval-Censored Data using Penalized Splines (Version 1.0.0)

2020
Petersen: Estimators for Two-Sample Capture-Recapture Studies (Version 2024.6.1)

2023
PracticalEquiDesign: Design of Practical Equivalence Trials (Version 0.0.3)

2021
PrevMap: Geostatistical Modelling of Spatially Referenced Prevalence Data (Version 1.5.4)

2014
ProbitSpatial: Probit with Spatial Dependence, SAR, SEM and SARAR Models (Version 1.1)

2016
QRM: Provides R-Language Code to Examine Quantitative Risk Management Concepts (Version 0.4-31)

2012
Qtools: Utilities for Quantiles (Version 1.5.9)

2016
RCTrep: Validation of Estimates of Treatment Effects in Observational Data (Version 1.2.0)

2023
RJafroc: Artificial Intelligence Systems and Observer Performance (Version 2.1.2)

2015
RMM: Revenue Management Modeling (Version 0.1.0)

2022
ROI: R Optimization Infrastructure (Version 1.0-1)

2011
ROOPSD: R Object Oriented Programming for Statistical Distribution (Version 0.3.9)

2020
RSSL: Implementations of Semi-Supervised Learning Approaches for Classification (Version 0.9.7)

2016
RTMB: 'R' Bindings for 'TMB' (Version 1.5)

2023
Rchoice: Discrete Choice (Binary, Poisson and Ordered) Models with Random Parameters (Version 0.3-6)

2014
SIRE: Finding Feedback Effects in SEM and Testing for Their Significance (Version 1.1.0)

2018
SPAS: Stratified-Petersen Analysis System (Version 2024.1.31)

2019
SemiEstimate: Solve Semi-Parametric Estimation by Implicit Profiling (Version 1.1.3)

2021
SemiMarkov: Multi-States Semi-Markov Models (Version 1.4.6)

2013
StReg: Student's t Regression Models (Version 1.1)

2023
StableEstim: Estimate the Four Parameters of Stable Laws using Different Methods (Version 2.2)

2014
SuperGauss: Superfast Likelihood Inference for Stationary Gaussian Time Series (Version 2.0.3)

2019
Surrogate: Evaluation of Surrogate Endpoints in Clinical Trials (Version 3.3.0)

2014
SurvRegCensCov: Weibull Regression for a Right-Censored Endpoint with Interval-Censored Covariate (Version 1.7)

2014
TMB: Template Model Builder: A General Random Effect Tool Inspired by 'ADMB' (Version 1.9.14)

2015
TSMSN: Truncated Scale Mixtures of Skew-Normal Distributions (Version 0.0.1)

2019
TempStable: A Collection of Methods to Estimate Parameters of Different Tempered Stable Distributions (Version 0.2.2)

2023
Temporal: Parametric Time to Event Analysis (Version 0.3.0.1)

2018
TestFunctions: Test Functions for Simulation Experiments and Evaluating Optimization and Emulation Algorithms (Version 0.2.1)

2016
ThresholdROC: Optimum Threshold Estimation (Version 2.9.4)

2011
UPCM: Uncertainty in Partial Credit Models (Version 0.0-3)

2021
VCA: Variance Component Analysis (Version 1.5.1)

2015
VineCopula: Statistical Inference of Vine Copulas (Version 2.5.1)

2012
WeMix: Weighted Mixed-Effects Models Using Multilevel Pseudo Maximum Likelihood Estimation (Version 4.0.3)

2018
activegp: Gaussian Process Based Design and Analysis for the Active Subspace Method (Version 1.1.1)

2020
adjustedCurves: Confounder-Adjusted Survival Curves and Cumulative Incidence Functions (Version 0.11.2)

2022
aghq: Adaptive Gauss Hermite Quadrature for Bayesian Inference (Version 0.4.1)

2021
alabama: Constrained Nonlinear Optimization (Version 2023.1.0)

2010
aldvmm: Adjusted Limited Dependent Variable Mixture Models (Version 0.8.8)

2021
antitrust: Tools for Antitrust Practitioners (Version 0.99.26)

2012
apollo: Tools for Choice Model Estimation and Application (Version 0.3.3)

2019
aster: Aster Models (Version 1.1-3)

2005
auctionr: Estimate First-Price Auction Model (Version 0.1.0)

2020
bayesDccGarch: Methods and Tools for Bayesian Dynamic Conditional Correlation GARCH(1,1) Model (Version 3.0.4)

2015
bayesmeta: Bayesian Random-Effects Meta-Analysis and Meta-Regression (Version 3.4)

2015
bbmle: Tools for General Maximum Likelihood Estimation (Version 1.0.25.1)

2007
betaDelta: Confidence Intervals for Standardized Regression Coefficients (Version 1.0.5)

2022
betareg: Beta Regression (Version 3.2-0)

2004
bizicount: Bivariate Zero-Inflated Count Models Using Copulas (Version 1.3.3)

2022
blackbox: Black Box Optimization and Exploration of Parameter Space (Version 1.1.46)

2016
brglm2: Bias Reduction in Generalized Linear Models (Version 0.9.2)

2017
bvpa: Bivariate Pareto Distribution (Version 1.0.0)

2023
catIrt: Simulate IRT-Based Computerized Adaptive Tests (Version 0.5.1)

2012
cccp: Cone Constrained Convex Problems (Version 0.3-1)

2015
chainbinomial: Chain Binomial Models for Analysis of Infectious Disease Data (Version 0.1.5)

2024
chandwich: Chandler-Bate Sandwich Loglikelihood Adjustment (Version 1.1.6)

2018
climwin: Climate Window Analysis (Version 1.2.3)

2015
coconots: Convolution-Closed Models for Count Time Series (Version 1.1.3)

2023
compound.Cox: Univariate Feature Selection and Compound Covariate for Predicting Survival (Version 3.30)

2012
condGEE: Parameter Estimation in Conditional GEE for Recurrent Event Gap Times (Version 0.2.0)

2009
copCAR: Fitting the copCAR Regression Model for Discrete Areal Data (Version 2.0-4)

2015
copula: Multivariate Dependence with Copulas (Version 1.1-4)

2005
corHMM: Hidden Markov Models of Character Evolution (Version 2.8)

2013
corncob: Count Regression for Correlated Observations with the Beta-Binomial (Version 0.4.1)

2021
cotram: Count Transformation Models (Version 0.5-1)

2019
cta: Contingency Table Analysis Based on ML Fitting of MPH Models (Version 1.3.0)

2021
ctmcd: Estimating the Parameters of a Continuous-Time Markov Chain from Discrete-Time Data (Version 1.4.4)

2016
ctmm: Continuous-Time Movement Modeling (Version 1.2.0)

2015
cuRe: Parametric Cure Model Estimation (Version 1.1.1)

2020
discfrail: Cox Models for Time-to-Event Data with Nonparametric Discrete Group-Specific Frailties (Version 0.1)

2019
discSurv: Discrete Time Survival Analysis (Version 2.0.0)

2015
distributional: Vectorised Probability Distributions (Version 0.4.0)

2020
diversitree: Comparative 'Phylogenetic' Analyses of Diversification (Version 0.10-0)

2010
docopulae: Optimal Designs for Copula Models (Version 0.4.0)

2015
dsm: Density Surface Modelling of Distance Sampling Data (Version 2.3.3)

2013
dwp: Density-Weighted Proportion (Version 1.1)

2022
dynr: Dynamic Models with Regime-Switching (Version 0.1.16-105)

2016
ebnm: Solve the Empirical Bayes Normal Means Problem (Version 1.1-2)

2022
elasdics: Elastic Analysis of Sparse, Dense and Irregular Curves (Version 1.1.3)

2021
em: Generic EM Algorithm (Version 1.0.0)

2023
embryogrowth: Tools to Analyze the Thermal Reaction Norm of Embryo Growth (Version 9.5)

2014
emdbook: Support Functions and Data for "Ecological Models and Data" (Version 1.3.13)

2007
emmeans: Estimated Marginal Means, aka Least-Squares Means (Version 1.10.4)

2017
equateMultiple: Equating of Multiple Forms (Version 0.1.2)

2017
ergMargins: Process Analysis for Exponential Random Graph Models (Version 1.3)

2019
eventPred: Event Prediction (Version 0.2.5)

2023
evolqg: Evolutionary Quantitative Genetics (Version 0.3-4)

2015
extendedFamily: Additional Families for Generalized Linear Models (Version 0.2.4)

2020
fastR2: Foundations and Applications of Statistics Using R (2nd Edition) (Version 1.2.4)

2017
fastcpd: Fast Change Point Detection via Sequential Gradient Descent (Version 0.14.3)

2023
fcirt: Forced Choice in Item Response Theory (Version 0.1.0)

2022
fdaconcur: Concurrent Regression and History Index Models for Functional Data (Version 0.1.3)

2022
fdapace: Functional Data Analysis and Empirical Dynamics (Version 0.6.0)

2016
fdarep: Two-Dimensional FPCA, Marginal FPCA, and Product FPCA for Repeated Functional Data (Version 0.1.1)

2024
fddm: Fast Implementation of the Diffusion Decision Model (Version 1.0-2)

2020
fic: Focused Information Criteria for Model Comparison (Version 1.0.0)

2019
fido: Bayesian Multinomial Logistic Normal Regression (Version 1.1.1)

2022
finiteruinprob: Computation of the Probability of Ruin Within a Finite Time Horizon (Version 0.6)

2014
fishmethods: Fishery Science Methods and Models (Version 1.12-1)

2009
fitHeavyTail: Mean and Covariance Matrix Estimation under Heavy Tails (Version 0.2.0)

2019
fitlandr: Fit Vector Fields and Potential Landscapes from Intensive Longitudinal Data (Version 0.1.0)

2023
fitode: Tools for Ordinary Differential Equations Model Fitting (Version 0.1.1)

2022
fixest: Fast Fixed-Effects Estimations (Version 0.12.1)

2019
flacco: Feature-Based Landscape Analysis of Continuous and Constrained Optimization Problems (Version 1.8)

2015
flexCWM: Flexible Cluster-Weighted Modeling (Version 1.92)

2013
flexrsurv: Flexible Relative Survival Analysis (Version 2.0.18)

2016
flexsurv: Flexible Parametric Survival and Multi-State Models (Version 2.3.2)

2011
fntl: Numerical Tools for 'Rcpp' and Lambda Functions (Version 0.1.0)

2024
footBayes: Fitting Bayesian and MLE Football Models (Version 0.2.0)

2022
fracprolif: Fraction Proliferation via a Quiescent Growth Model (Version 1.0.7)

2012
frailtyEM: Fitting Frailty Models with the EM Algorithm (Version 1.0.1)

2017
frailtyMMpen: Efficient Algorithm for High-Dimensional Frailty Model (Version 1.2.1)

2023
frailtySurv: General Semiparametric Shared Frailty Model (Version 1.3.8)

2015
gamCopula: Generalized Additive Models for Bivariate Conditional Dependence Structures and Vine Copulas (Version 0.0-7)

2017
gasmodel: Generalized Autoregressive Score Models (Version 0.6.0)

2022
gcKrig: Analysis of Geostatistical Count Data using Gaussian Copulas (Version 1.1.8)

2016
geex: An API for M-Estimation (Version 1.1.1)

2017
geoFKF: Kriging Method for Spatial Functional Data (Version 0.1.1)

2020
geostatsp: Geostatistical Modelling with Likelihood and Bayes (Version 2.0.6)

2013
ggdist: Visualizations of Distributions and Uncertainty (Version 3.3.2)

2020
ghyp: Generalized Hyperbolic Distribution and Its Special Cases (Version 1.6.5)

2007
gim: Generalized Integration Model (Version 0.33.1)

2018
glinvci: Phylogenetic Comparative Methods with Uncertainty Estimates (Version 1.2.4)

2021
glmmTMB: Generalized Linear Mixed Models using Template Model Builder (Version 1.1.9)

2017
glmtoolbox: Set of Tools to Data Analysis using Generalized Linear Models (Version 0.1.12)

2021
glmx: Generalized Linear Models Extended (Version 0.2-1)

2013
gofCopula: Goodness-of-Fit Tests for Copulae (Version 0.4-1)

2015
grandR: Comprehensive Analysis of Nucleotide Conversion Sequencing Data (Version 0.2.5)

2022
grmsem: Genetic-Relationship-Matrix Structural Equation Modelling (GRMSEM) (Version 1.1.0)

2021
hesim: Health Economic Simulation Modeling and Decision Analysis (Version 0.5.4)

2017
hierSDR: Hierarchical Sufficient Dimension Reduction (Version 0.1)

2021
highfrequency: Tools for Highfrequency Data Analysis (Version 1.0.1)

2012
hsem: Hierarchical Structural Equation Model (Version 1.0)

2021
incidental: Implements Empirical Bayes Incidence Curves (Version 0.1)

2020
indelmiss: Insertion Deletion Analysis While Accounting for Possible Missing Data (Version 1.0.10)

2016
inferference: Methods for Causal Inference with Interference (Version 1.0.2)

2015
ivtools: Instrumental Variables (Version 2.3.0)

2018
kergp: Gaussian Process Laboratory (Version 0.5.7)

2015
kinematics: Studying Sampled Trajectories (Version 1.0.0)

2021
lacm: Latent Autoregressive Count Models (Version 0.1.1)

2018
lamle: Maximum Likelihood Estimation of Latent Variable Models (Version 0.3.1)

2023
lava: Latent Variable Models (Version 1.8.0)

2012
lavaSearch2: Tools for Model Specification in the Latent Variable Framework (Version 2.0.3)

2018
lavaan: Latent Variable Analysis (Version 0.6-18)

2012
lax: Loglikelihood Adjustment for Extreme Value Models (Version 1.2.3)

2019
lbfgsb3c: Limited Memory BFGS Minimizer with Bounds on Parameters with optim() 'C' Interface (Version 2024-3.4)

2018
lcmm: Extended Mixed Models Using Latent Classes and Latent Processes (Version 2.1.0)

2010
lcpm: Ordinal Outcomes: Generalized Linear Models with the Log Link (Version 0.1.1)

2019
legion: Forecasting Using Multivariate Models (Version 0.1.2)

2021
lessSEM: Non-Smooth Regularization for Structural Equation Models (Version 1.5.5)

2023
lfe: Linear Group Fixed Effects (Version 3.0-0)

2011
lme4: Linear Mixed-Effects Models using 'Eigen' and S4 (Version 1.1-35.5)

2003
lmerTest: Tests in Linear Mixed Effects Models (Version 3.1-3)

2013
lmls: Gaussian Location-Scale Regression (Version 0.1.0)

2022
longevity: Statistical Methods for the Analysis of Excess Lifetimes (Version 1.1.1)

2023
lqr: Robust Linear Quantile Regression (Version 5.2)

2015
lsbs: Bandwidth Selection for Level Sets and HDR Estimation (Version 0.1)

2018
marcher: Migration and Range Change Estimation in R (Version 0.0-2)

2017
marginaleffects: Predictions, Comparisons, Slopes, Marginal Means, and Hypothesis Tests (Version 0.22.0)

2021
marked: Mark-Recapture Analysis for Survival and Abundance Estimation (Version 1.2.8)

2013
markets: Estimation Methods for Markets in Equilibrium and Disequilibrium (Version 1.1.5)

2022
markophylo: Markov Chain Models for Phylogenetic Trees (Version 1.0.9)

2015
mbmixture: Microbiome Mixture Analysis (Version 0.4)

2020
mccmeiv: Analysis of Matched Case Control Data with a Mismeasured Exposure that is Accompanied by Instrumental Variables (Version 2.1)

2018
mecor: Measurement Error Correction in Linear Models with a Continuous Outcome (Version 1.0.0)

2021
mederrRank: Bayesian Methods for Identifying the Most Harmful Medication Errors (Version 0.1.0)

2012
merDeriv: Case-Wise and Cluster-Wise Derivatives for Mixed Effects Models (Version 0.2-4)

2017
metRology: Support for Metrological Applications (Version 0.9-28-1)

2012
metaConvert: An Automatic Suite for Estimation of Various Effect Size Measures (Version 1.0.0)

2024
metaSEM: Meta-Analysis using Structural Equation Modeling (Version 1.4.0)

2015
metadat: Meta-Analysis Datasets (Version 1.2-0)

2021
metafor: Meta-Analysis Package for R (Version 4.6-0)

2009
metaplus: Robust Meta-Analysis and Meta-Regression (Version 1.0-5)

2014
metarep: Replicability-Analysis Tools for Meta-Analysis (Version 1.2.0)

2020
mets: Analysis of Multivariate Event Times (Version 1.3.4)

2012
mexhaz: Mixed Effect Excess Hazard Models (Version 2.6)

2016
mfGARCH: Mixed-Frequency GARCH Models (Version 0.2.1)

2018
mfp: Multivariable Fractional Polynomials (Version 1.5.4.1)

2004
mhurdle: Multiple Hurdle Tobit Models (Version 1.3-1)

2010
miceadds: Some Additional Multiple Imputation Functions, Especially for 'mice' (Version 3.17-44)

2014
midasr: Mixed Data Sampling Regression (Version 0.8)

2013
mig: Multivariate Inverse Gaussian Distribution (Version 1.0)

2024
milr: Multiple-Instance Logistic Regression with LASSO Penalty (Version 0.3.1)

2016
mipfp: Multidimensional Iterative Proportional Fitting and Alternative Models (Version 3.2.1)

2014
misclassGLM: Computation of Generalized Linear Models with Misclassified Covariates Using Side Information (Version 0.3.5)

2016
mixl: Simulated Maximum Likelihood Estimation of Mixed Logit Models for Large Datasets (Version 1.3.4)

2020
mkin: Kinetic Evaluation of Chemical Degradation Data (Version 1.2.6)

2010
mlr: Machine Learning in R (Version 2.19.2)

2013
mlrv: Long-Run Variance Estimation in Time Series Regression (Version 0.1.2)

2023
mlt.docreg: Most Likely Transformations: Documentation and Regression Tests (Version 1.1-8)

2016
mlt: Most Likely Transformations (Version 1.5-2)

2016
momentuHMM: Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models (Version 1.5.5)

2017
moveHMM: Animal Movement Modelling using Hidden Markov Models (Version 1.9)

2015
mpath: Regularized Linear Models (Version 0.4-2.26)

2014
mrds: Mark-Recapture Distance Sampling (Version 2.3.0)

2012
msm: Multi-State Markov and Hidden Markov Models in Continuous Time (Version 1.7.1)

2002
multicmp: Flexible Modeling of Multivariate Count Data via the Multivariate Conway-Maxwell-Poisson Distribution (Version 1.1)

2017
multipleOutcomes: Asymptotic Covariance Matrix of Regression Models for Multiple Outcomes (Version 0.4)

2024
mvglmmRank: Multivariate Generalized Linear Mixed Models for Ranking Sports Teams (Version 1.2-4)

2014
mvord: Multivariate Ordinal Regression Models (Version 1.2.5)

2017
mvtnorm: Multivariate Normal and t Distributions (Version 1.3-1)

2000
nieve: Miscellaneous Utilities for Extreme Value Analysis (Version 0.1.3)

2022
nimble: MCMC, Particle Filtering, and Programmable Hierarchical Modeling (Version 1.2.1)

2016
nlmm: Generalized Laplace Mixed-Effects Models (Version 1.1.0)

2020
nlmrt: Functions for Nonlinear Least Squares Solutions (Version 2016.3.2)

2012
nlsic: Non Linear Least Squares with Inequality Constraints (Version 1.0.4)

2022
nlsr: Functions for Nonlinear Least Squares Solutions - Updated 2022 (Version 2023.8.31)

2017
nmw: Understanding Nonlinear Mixed Effects Modeling for Population Pharmacokinetics (Version 0.1.5)

2017
noia: Implementation of the Natural and Orthogonal InterAction (NOIA) Model (Version 0.97.3)

2008
ohenery: Modeling of Ordinal Random Variables via Softmax Regression (Version 0.1.1)

2019
optextras: Tools to Support Optimization Possibly with Bounds and Masks (Version 2019-12.4)

2013
optimParallel: Parallel Version of the L-BFGS-B Optimization Method (Version 1.0-2)

2018
optimx: Expanded Replacement and Extension of the 'optim' Function (Version 2023-10.21)

2010
ordgam: Additive Model for Ordinal Data using Laplace P-Splines (Version 0.9.1)

2023
ordinal: Regression Models for Ordinal Data (Version 2023.12-4.1)

2010
pacotest: Testing for Partial Copulas and the Simplifying Assumption in Vine Copulas (Version 0.4.2)

2017
pbkrtest: Parametric Bootstrap, Kenward-Roger and Satterthwaite Based Methods for Test in Mixed Models (Version 0.5.3)

2011
pda: Privacy-Preserving Distributed Algorithms (Version 1.2.7)

2020
phenofit: Extract Remote Sensing Vegetation Phenology (Version 0.3.9)

2019
phenology: Tools to Manage a Parametric Function that Describes Phenology and More (Version 10.1)

2012
phytools: Phylogenetic Tools for Comparative Biology (and Other Things) (Version 2.3-0)

2011
pooling: Fit Poolwise Regression Models (Version 1.1.2)

2018
powerNLSEM: Simulation-Based Power Estimation (MSPE) for Nonlinear SEM (Version 0.1.1)

2024
predictmeans: Predicted Means for Linear and Semiparametric Models (Version 1.1.0)

2014
pso: Particle Swarm Optimization (Version 1.0.4)

2010
pspatreg: Spatial and Spatio-Temporal Semiparametric Regression Models with Spatial Lags (Version 1.1.2)

2022
psqn: Partially Separable Quasi-Newton (Version 0.3.1)

2020
psychomix: Psychometric Mixture Models (Version 1.1-8)

2011
psychonetrics: Structural Equation Modeling and Confirmatory Network Analysis (Version 0.13)

2019
ptmixed: Poisson-Tweedie Generalized Linear Mixed Model (Version 1.1.3)

2019
puniform: Meta-Analysis Methods Correcting for Publication Bias (Version 0.2.7)

2018
rSPDE: Rational Approximations of Fractional Stochastic Partial Differential Equations (Version 2.3.3)

2019
regsem: Regularized Structural Equation Modeling (Version 1.9.5)

2016
reservr: Fit Distributions and Neural Networks to Censored and Truncated Data (Version 0.0.3)

2022
ridgetorus: PCA on the Torus via Density Ridges (Version 1.0.2)

2022
riskParityPortfolio: Design of Risk Parity Portfolios (Version 0.2.2)

2018
riskRegression: Risk Regression Models and Prediction Scores for Survival Analysis with Competing Risks (Version 2023.12.21)

2011
robmixglm: Robust Generalized Linear Models (GLM) using Mixtures (Version 1.2-3)

2018
robustBLME: Robust Bayesian Linear Mixed-Effects Models using ABC (Version 0.1.3)

2017
robustbetareg: Robust Beta Regression (Version 0.3.0)

2022
robustvarComp: Robust Estimation of Variance Component Models (Version 0.1-7)

2014
rodd: Optimal Discriminating Designs (Version 0.2-1)

2014
rpf: Response Probability Functions (Version 1.0.14)

2012
rugarch: Univariate GARCH Models (Version 1.5-2)

2011
rxSeq: Combined Total and Allele Specific Reads Sequencing Study (Version 0.99.3)

2016
sarima: Simulation and Prediction with Seasonal ARIMA Models (Version 0.9.3)

2017
sars: Fit and Compare Species-Area Relationship Models Using Multimodel Inference (Version 1.3.6)

2018
schumaker: Schumaker Shape-Preserving Spline (Version 1.2.1)

2015
scorematchingad: Score Matching Estimation by Automatic Differentiation (Version 0.0.67)

2024
sdprisk: Measures of Risk for the Compound Poisson Risk Process with Diffusion (Version 1.1-6)

2012
sensR: Thurstonian Models for Sensory Discrimination (Version 1.5-3)

2008
seqHMM: Mixture Hidden Markov Models for Social Sequence Data and Other Multivariate, Multichannel Categorical Time Series (Version 1.2.6)

2015
sgt: Skewed Generalized T Distribution Tree (Version 2.0)

2015
sinar: Conditional Least Squared (CLS) Method for the Model SINAR(1,1) (Version 0.1.0)

2020
skewlmm: Scale Mixture of Skew-Normal Linear Mixed Models (Version 1.1.0)

2020
sklarsomega: Measuring Agreement Using Sklar's Omega Coefficient (Version 3.0-2)

2018
skyscapeR: Data Analysis and Visualization for Skyscape Archaeology (Version 1.0.0)

2017
slgf: Bayesian Model Selection with Suspected Latent Grouping Factors (Version 2.0.0)

2021
smam: Statistical Modeling of Animal Movements (Version 0.7.2)

2013
smile: Spatial Misalignment: Interpolation, Linkage, and Estimation (Version 1.0.5)

2022
smooth: Forecasting Using State Space Models (Version 4.0.2)

2016
smoothic: Variable Selection Using a Smooth Information Criterion (Version 1.2.0)

2021
smovie: Some Movies to Illustrate Concepts in Statistics (Version 1.1.6)

2018
sn: The Skew-Normal and Related Distributions Such as the Skew-t and the SUN (Version 2.1.1)

2006
sna: Tools for Social Network Analysis (Version 2.7-2)

2001
sns: Stochastic Newton Sampler (SNS) (Version 1.2.2)

2014
spaMM: Mixed-Effect Models, with or without Spatial Random Effects (Version 4.5.0)

2013
spant: MR Spectroscopy Analysis Tools (Version 2.23.0)

2017
sparseHessianFD: Numerical Estimation of Sparse Hessians (Version 0.3.3.7)

2012
sphunif: Uniformity Tests on the Circle, Sphere, and Hypersphere (Version 1.4.0)

2021
spldv: Spatial Models for Limited Dependent Variables (Version 0.1.3)

2022
spsur: Spatial Seemingly Unrelated Regression Models (Version 1.0.2.5)

2019
ssmodels: Sample Selection Models (Version 1.0.1)

2022
ssym: Fitting Semi-Parametric log-Symmetric Regression Models (Version 1.5.8)

2014
stabreg: Linear Regression with the Stable Distribution (Version 0.1.2)

2019
statespacer: State Space Modelling in 'R' (Version 0.5.0)

2020
stdReg: Regression Standardization (Version 3.4.1)

2016
surveillance: Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena (Version 1.23.1)

2005
survey: Analysis of Complex Survey Samples (Version 4.4-2)

2003
svycdiff: Controlled Difference Estimation for Complex Surveys (Version 0.1.1)

2024
tbd: Estimation of Causal Effects with Outcomes Truncated by Death (Version 0.1.0)

2019
tcl: Testing in Conditional Likelihood Context (Version 0.2.0)

2019
tcpl: ToxCast Data Analysis Pipeline (Version 3.1.0)

2018
tcplfit2: Concentration-Response Modeling of HTS or Transcriptomics Data (Version 0.1.6)

2021
tdsa: Time-Dependent Sensitivity Analysis (Version 1.1-0)

2023
temperatureresponse: Temperature Response (Version 0.2)

2017
tfarima: Transfer Function and ARIMA Models (Version 0.3.2)

2020
tidydelta: Estimation of Standard Errors using Delta Method (Version 0.1.0)

2024
timereg: Flexible Regression Models for Survival Data (Version 2.0.6)

2008
torch: Tensors and Neural Networks with 'GPU' Acceleration (Version 0.13.0)

2020
tram: Transformation Models (Version 1.0-5)

2018
tramME: Transformation Models with Mixed Effects (Version 1.0.6)

2020
tsgarch: Univariate GARCH Models (Version 1.0.2)

2024
ttcg: Three-Term Conjugate Gradient for Unconstrained Optimization (Version 1.0.1)

2021
turboEM: A Suite of Convergence Acceleration Schemes for EM, MM and Other Fixed-Point Algorithms (Version 2021.1)

2011
tvgarch: Time Varying GARCH Modelling (Version 2.4.2)

2021
ucminf: General-Purpose Unconstrained Non-Linear Optimization (Version 1.2.2)

2009
ui: Uncertainty Intervals and Sensitivity Analysis for Missing Data (Version 0.1.1)

2019
unitquantreg: Parametric Quantile Regression Models for Bounded Data (Version 0.0.6)

2022
vcrpart: Tree-Based Varying Coefficient Regression for Generalized Linear and Ordinal Mixed Models (Version 1.0-5)

2014
vici: Vaccine Induced Cellular Immunogenicity with Bivariate Modeling (Version 0.7.3)

2019
waydown: Computation of Approximate Potentials for Weakly Non-Gradient Fields (Version 1.1.0)

2021
wnl: Minimization Tool for Pharmacokinetic-Pharmacodynamic Data Analysis (Version 0.8.1)

2017
xhaz: Excess Hazard Modelling Considering Inappropriate Mortality Rates (Version 2.0.2)

2022
xmeta: A Toolbox for Multivariate Meta-Analysis (Version 1.3.2)

2015
xtune: Regularized Regression with Feature-Specific Penalties Integrating External Information (Version 2.0.0)

2019

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