pheatmap: Pretty Heatmaps

Canonical link: https://rscholar.com/pkg/pheatmap

Raivo Kolde • View description and downloads View dependencies GitHub project

2010 Published

1.0.12 Version

0 Citations

1 Authors

Referenced by ⇅	Year
CIDER: Meta-Clustering for Single-Cell Data Integration and Evaluation (Version 0.99.1)	2021
clustDRM: Clustering Dose-Response Curves and Fitting Appropriate Models to Them (Version 0.1-0)	2019
MM2S: Single-Sample Classifier of Medulloblastoma Subtypes for Medulloblastoma Patient Samples, Mouse Models, and Cell Lines (Version 1.0.6)	2015
PALMO: Identify Intra and Inter-Donor Variations in Bulk or Single Cell Longitudinal Dataset (Version 0.1.2)	2022
timeSeq: Detecting Differentially Expressed Genes in Time Course RNA-Seq Data (Version 1.0.4)	2015
EnrichDO: a Global Weighted Model for Disease Ontology Enrichment Analysis (Version 0.1-1)	2024
MetaIntegrator: Meta-Analysis of Gene Expression Data (Version 2.1.3)	2016
MetChem: Chemical Structural Similarity Analysis (Version 0.4)	2022
MetaNet: Network Analysis for Omics Data (Version 0.1.2)	2024
ADAPTS: Automated Deconvolution Augmentation of Profiles for Tissue Specific Cells (Version 1.0.22)	2019
Anaconda: Targeted Differential and Global Enrichment Analysis of Taxonomic Rank by Shared Asvs (Version 0.1.5)	2022
AnnoProbe: Annotate the Gene Symbols for Probes in Expression Array (Version 0.1.7)	2021
CACIMAR: Cross-Species Analysis of Cell Identities, Markers and Regulations (Version 1.0.0)	2022
CB2: CRISPR Pooled Screen Analysis using Beta-Binomial Test (Version 1.3.4)	2019
CINNA: Deciphering Central Informative Nodes in Network Analysis (Version 1.2.2)	2017
Canopy: Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing (Version 1.3.0)	2015
CommKern: Network-Based Communities and Kernel Machine Methods (Version 1.0.1)	2022
DGP4LCF: Dependent Gaussian Processes for Longitudinal Correlated Factors (Version 1.0.0)	2024
DRviaSPCN: Drug Repurposing in Cancer via a Subpathway Crosstalk Network (Version 0.1.4)	2021
DiscreteGapStatistic: An Extension of the Gap Statistic for Ordinal/Categorical Data (Version 0.1.0)	2024
DrugSim2DR: Predict Drug Functional Similarity to Drug Repurposing (Version 0.1.1)	2022
FateID: Quantification of Fate Bias in Multipotent Progenitors (Version 0.2.2)	2017
GABB: Facilitation of Data Preparation and Plotting Procedures for RDA and PCA Analyses (Version 0.3.8)	2023
GEInfo: Gene-Environment Interaction Analysis Incorporating Prior Information (Version 1.0)	2022
GSEMA: Gene Set Enrichment Meta-Analysis (Version 0.99.3)	2024
GeneNMF: Non-Negative Matrix Factorization for Single-Cell Omics (Version 0.6.0)	2024
Grouphmap: 'Grouphmap' is an Automated One-Step Common Analysis of Batch Expression Profile (Version 1.0.0)	2023
IDMIR: Identification of Dysregulated MiRNAs Based on MiRNA-MiRNA Interaction Network (Version 0.1.0)	2023
InteRD: The Integrated and Robust Deconvolution (Version 0.1.1)	2022
KOGMWU: Functional Summary and Meta-Analysis of Gene Expression Data (Version 1.2)	2015
LipidomicsR: Elegant Tools for Processing and Visualization of Lipidomics Data (Version 0.3.6)	2024
MARVEL: Revealing Splicing Dynamics at Single-Cell Resolution (Version 1.4.0)	2021
MixLFA: Mixture of Longitudinal Factor Analysis Methods (Version 1.0.0)	2024
NPflow: Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry Data (Version 0.13.5)	2016
OlinkAnalyze: Facilitate Analysis of Proteomic Data from Olink (Version 4.0.1)	2022
OncoSubtype: Predict Cancer Subtypes Based on TCGA Data using Machine Learning Method (Version 1.0.0)	2024
Platypus: Single-Cell Immune Repertoire and Gene Expression Analysis (Version 3.6.0)	2021
QuantNorm: Mitigating the Adverse Impact of Batch Effects in Sample Pattern Detection (Version 1.0.5)	2018
RQdeltaCT: Relative Quantification of Gene Expression using Delta Ct Methods (Version 1.3.0)	2024
RVenn: Set Operations for Many Sets (Version 1.1.0)	2019
RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data (Version 0.3.6)	2018
ReporterScore: Generalized Reporter Score-Based Enrichment Analysis for Omics Data (Version 0.1.8)	2024
SCORPIUS: Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data (Version 1.0.9)	2018
SCpubr: Generate Publication Ready Visualizations of Single Cell Transcriptomics Data (Version 2.0.2)	2022
SMDIC: Identification of Somatic Mutation-Driven Immune Cells (Version 0.1.6)	2020
SpaCCI: Spatially Aware Cell-Cell Interaction Analysis (Version 1.0.2)	2024
SubtypeDrug: Prioritization of Candidate Cancer Subtype Specific Drugs (Version 0.1.9)	2020
TOmicsVis: Transcriptome Visualization Process Scheme (Version 2.0.0)	2023
VALERIE: Visualising Splicing at Single-Cell Resolution (Version 1.1.0)	2020
bakR: Analyze and Compare Nucleotide Recoding RNA Sequencing Datasets (Version 1.0.1)	2022
bestridge: A Comprehensive R Package for Best Subset Selection (Version 1.0.7)	2021
binomialtrend: Calculates the Statistical Significance of a Trend in a Set of Measurements (Version 0.0.0.3)	2022
cape: Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice (Version 3.1.2)	2013
cinaR: A Computational Pipeline for Bulk 'ATAC-Seq' Profiles (Version 0.2.3)	2020
coca: Cluster-of-Clusters Analysis (Version 1.1.0)	2020
cophescan: Adaptation of the Coloc Method for PheWAS (Version 1.4.1)	2023
covid19.analytics: Load and Analyze Live Data from the COVID-19 Pandemic (Version 2.1.3.3)	2020
dartR.base: Analysing 'SNP' and 'Silicodart' Data - Basic Functions (Version 0.98)	2023
dartR: Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis (Version 2.9.7)	2017
dcortools: Providing Fast and Flexible Functions for Distance Correlation Analysis (Version 0.1.6)	2021
deTS: Tissue-Specific Enrichment Analysis (Version 1.0)	2019
diverse: Diversity Measures for Complex Systems (Version 0.1.5)	2015
drclust: Simultaneous Clustering and (or) Dimensionality Reduction (Version 0.1)	2024
eHDPrep: Quality Control and Semantic Enrichment of Datasets (Version 1.3.3)	2022
eclust: Environment Based Clustering for Interpretable Predictive Models in High Dimensional Data (Version 0.1.0)	2017
genekitr: Gene Analysis Toolkit (Version 1.2.8)	2021
goat: Gene Set Analysis Using the Gene Set Ordinal Association Test (Version 1.0)	2024
hybridogram: Function that Creates a Heat Map from Hybridization Data (Version 0.3.2)	2021
iCellR: Analyzing High-Throughput Single Cell Sequencing Data (Version 1.6.7)	2019
iClusterVB: Fast Integrative Clustering and Feature Selection for High Dimensional Data (Version 0.1.2)	2024
iglu: Interpreting Glucose Data from Continuous Glucose Monitors (Version 4.2.0)	2020
immunarch: Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires (Version 0.9.1)	2020
klic: Kernel Learning Integrative Clustering (Version 1.0.4)	2020
microeco: Microbial Community Ecology Data Analysis (Version 1.9.1)	2020
mixdir: Cluster High Dimensional Categorical Datasets (Version 0.3.0)	2018
nbTransmission: Naive Bayes Transmission Analysis (Version 1.1.4)	2020
omics: '–omics' Data Analysis Toolbox (Version 0.1-5)	2015
pagoda2: Single Cell Analysis and Differential Expression (Version 1.0.12)	2021
pctax: Professional Comprehensive Omics Data Analysis (Version 0.1.1)	2024
protti: Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools (Version 0.9.1)	2021
psSubpathway: Flexible Identification of Phenotype-Specific Subpathways (Version 0.1.3)	2019
scGOclust: Measuring Cell Type Similarity with Gene Ontology in Single-Cell RNA-Seq (Version 0.2.1)	2023
scMappR: Single Cell Mapper (Version 1.0.11)	2020
scaper: Single Cell Transcriptomics-Level Cytokine Activity Prediction and Estimation (Version 0.1.0)	2023
sigminer: Extract, Analyze and Visualize Mutational Signatures for Genomic Variations (Version 2.3.1)	2019
slanter: Slanted Matrices and Ordered Clustering (Version 0.2-0)	2020
spatialTIME: Spatial Analysis of Vectra Immunoflourescent Data (Version 1.3.4-5)	2021
ssMutPA: Single-Sample Mutation-Based Pathway Analysis (Version 0.1.2)	2024
statVisual: Statistical Visualization Tools (Version 1.2.1)	2019
tidyheatmaps: Heatmaps from Tidy Data (Version 0.2.1)	2024
tidyrules: Utilities to Retrieve Rulelists from Model Fits, Filter, Prune, Reorder and Predict on Unseen Data (Version 0.2.7)	2019
tinyarray: Expression Data Analysis and Visualization (Version 2.4.2)	2021
tmod: Feature Set Enrichment Analysis for Metabolomics and Transcriptomics (Version 0.50.13)	2015
treestats: Phylogenetic Tree Statistics (Version 1.70.5)	2024
umiAnalyzer: Tools for Analyzing Sequencing Data with Unique Molecular Identifiers (Version 1.0.0)	2021
yaConsensus: Consensus Clustering of Omic Data (Version 1.0)	2021

RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN). Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.