phylobase: Base Package for Phylogenetic Structures and Comparative Data

Canonical link: https://rscholar.com/pkg/phylobase

Marguerite Butler, • Peter Cowan • Damien de Vienne • Dirk Eddelbuettel • Mark Holder • Thibaut • Jombart • Steve Kembel • Francois Michonneau • David Orme • Brian O'Meara, • Emmanuel Paradis • Jim Regetz • Derrick Zwickl • View description and downloads View dependencies GitHub project

2009 Published

0.8.12 Version

0 Citations

14 Authors

Referenced by ⇅	Year
changeRangeR: Change Metrics for Species Geographic Ranges (Version 1.1.0)	2022
datelife: Scientific Data on Time of Lineage Divergence for Your Taxa (Version 0.6.8)	2022
DAISIEprep: Extracts Phylogenetic Island Community Data from Phylogenetic Trees (Version 0.4.0)	2023
PCPS: Principal Coordinates of Phylogenetic Structure (Version 1.0.7)	2014
RAINBOWR: Genome-Wide Association Study with SNP-Set Methods (Version 0.1.35)	2019
SigTree: Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree (Version 1.10.6)	2013
adephylo: Exploratory Analyses for the Phylogenetic Comparative Method (Version 1.1-16)	2009
adiv: Analysis of Diversity (Version 2.2.1)	2017
ddtlcm: Latent Class Analysis with Dirichlet Diffusion Tree Process Prior (Version 0.2.1)	2023
ecostats: Code and Data Accompanying the Eco-Stats Text (Warton 2022) (Version 1.2.1)	2020
nodeSub: Simulate DNA Alignments Using Node Substitutions (Version 1.2.8)	2021
phyext2: An Extension (for Package 'SigTree') of Some of the Classes in Package 'phylobase' (Version 0.0.4)	2015
phyloTop: Calculating Topological Properties of Phylogenies (Version 2.1.2)	2013
phylocanvas: Interactive Phylogenetic Trees Using the 'Phylocanvas' JavaScript Library (Version 0.1.3)	2017
phyloraster: Evolutionary Diversity Metrics for Raster Data (Version 2.1.0)	2023
phylosem: Phylogenetic Structural Equation Model (Version 1.1.4)	2023
phylosignal: Exploring the Phylogenetic Signal in Continuous Traits (Version 1.3.1)	2015
rotl: Interface to the 'Open Tree of Life' API (Version 3.1.0)	2015

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