umap: Uniform Manifold Approximation and Projection

Canonical link: https://rscholar.com/pkg/umap

Tomasz Konopka • View description and downloads View dependencies GitHub project

2018 Published

0 Citations

1 Authors

13 Revisions

0.2.10.0 Version

MIT License

Referenced by ⇅	Year
HVT: Constructing Hierarchical Voronoi Tessellations and Overlay Heatmaps for Data Analysis (Version 25.2.8)	2023
OTclust: Mean Partition, Uncertainty Assessment, Cluster Validation and Visualization Selection for Cluster Analysis (Version 1.0.6)	2019
RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data (Version 0.3.9)	2018
SuperCell: Simplification of scRNA-Seq Data by Merging Together Similar Cells (Version 1.1)	2024
KODAMA: Knowledge Discovery by Accuracy Maximization (Version 3.0)	2014
EmbedSOM: Fast Embedding Guided by Self-Organizing Map (Version 2.2)	2019
ggsem: Interactive Structural Equation Modeling (SEM) and Multi-Group Path Diagrams (Version 0.9.8)	2024
FateID: Quantification of Fate Bias in Multipotent Progenitors (Version 0.2.2)	2017
Mercator: Clustering and Visualizing Distance Matrices (Version 1.1.7)	2019
MiscMetabar: Miscellaneous Functions for Metabarcoding Analysis (Version 0.14.4)	2024
NGCHM: Next Generation Clustered Heat Maps (Version 1.0.4)	2024
OlinkAnalyze: Facilitate Analysis of Proteomic Data from Olink (Version 4.4.0)	2022
Platypus: Single-Cell Immune Repertoire and Gene Expression Analysis (Version 3.6.0)	2021
ProjectionBasedClustering: Projection Based Clustering (Version 1.2.2)	2017
RSDA: R to Symbolic Data Analysis (Version 3.2.5)	2013
SaturnCoefficient: Statistical Evaluation of UMAP Dimensionality Reductions (Version 1.4)	2024
SuperCell Cells: (Version )	0
UCSCXenaShiny: Interactive Analysis of UCSC Xena Data (Version 2.2.0)	2019
chameleon: Automatic Colors for Multi-Dimensional Data (Version 0.2-3)	2021
crosshap: Local Haplotype Clustering and Visualization (Version 1.4.0)	2023
dimRed: A Framework for Dimensionality Reduction (Version 0.2.7)	2017
emcAdr: Evolutionary Version of the Metropolis-Hastings Algorithm (Version 1.2)	2025
ggpca: Publication-Ready PCA, t-SNE, and UMAP Plots (Version 0.1.3)	2024
jrSiCKLSNMF: Multimodal Single-Cell Omics Dimensionality Reduction (Version 1.2.3)	2023
karyotapR: DNA Copy Number Analysis for Genome-Wide Tapestri Panels (Version 1.0.2)	2023
musclesyneRgies: Extract Muscle Synergies from Electromyography (Version 1.2.5)	2022
nevada: Network-Valued Data Analysis (Version 0.2.0)	2021
pctax: Professional Comprehensive Omics Data Analysis (Version 0.1.3)	2024
polarisR: Non-Linear Dimensionality Reduction Visualization Tool (Version 0.1.4)	2025
qeML: Quick and Easy Machine Learning Tools (Version 1.1)	2023
seriation: Infrastructure for Ordering Objects Using Seriation (Version 1.5.8)	2007
tall: Text Analysis for All (Version 0.5.1)	2025
theftdlc: Analyse and Interpret Time Series Features (Version 0.2.1)	2024
topolow: Force-Directed Euclidean Embedding of Dissimilarity Data (Version 2.0.1)	2025

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