uwot: The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality Reduction

Canonical link: https://rscholar.com/pkg/uwot

James Melville • Aaron Lun • Mohamed Nadhir Djekidel • Yuhan Hao • Dirk Eddelbuettel • View description and downloads View dependencies GitHub project

2019 Published

38 Citations

5 Authors

14 Revisions

0.2.3 Version

GPL License

Referenced by ⇅	Year
MiscMetabar: Miscellaneous Functions for Metabarcoding Analysis (Version 0.12.1)	2024
NGCHM: Next Generation Clustered Heat Maps (Version 1.0.4)	2024
BioM2: Biologically Explainable Machine Learning Framework (Version 1.1.1)	2023
inferCSN: Inferring Cell-Specific Gene Regulatory Network (Version 1.0.8)	2023
qeML: Quick and Easy Machine Learning Tools (Version 1.1)	2023
scROSHI: Robust Supervised Hierarchical Identification of Single Cells (Version 1.0.0.0)	2023
Evacluster: Evaluation Clustering Methods for Disease Subtypes Diagnosis (Version 0.1.0)	2022
HDStIM: High Dimensional Stimulation Immune Mapping ('HDStIM') (Version 0.1.0)	2022
MOCHA: Modeling for Single-Cell Open Chromatin Analysis (Version 1.1.0)	2022
SCIBER: Single-Cell Integrator and Batch Effect Remover (Version 0.2.2)	2022
WormTensor: A Clustering Method for Time-Series Whole-Brain Activity Data of 'C. elegans' (Version 0.1.1)	2022
bbknnR: Perform Batch Balanced KNN in R (Version 1.1.1)	2022
bundle: Serialize Model Objects with a Consistent Interface (Version 0.1.2)	2022
fastTopics: Fast Algorithms for Fitting Topic Models and Non-Negative Matrix Factorizations to Count Data (Version 0.6-192)	2022
mxnorm: Apply Normalization Methods to Multiplexed Images (Version 1.0.3)	2022
dynplot: Visualising Single-Cell Trajectories (Version 1.1.2)	2021
ClustAssess: Tools for Assessing Clustering (Version 1.0.0)	2021
conos: Clustering on Network of Samples (Version 1.5.2)	2021
healthyR.ai: The Machine Learning and AI Modeling Companion to 'healthyR' (Version 0.1.0)	2021
pagoda2: Single Cell Analysis and Differential Expression (Version 1.0.12)	2021
rliger: Linked Inference of Genomic Experimental Relationships (Version 2.1.0)	2021
scDHA: Single-Cell Decomposition using Hierarchical Autoencoder (Version 1.2.2)	2021
symphony: Efficient and Precise Single-Cell Reference Atlas Mapping (Version 0.1.1)	2021
topicmodels.etm: Topic Modelling in Embedding Spaces (Version 0.1.0)	2021
TreeDist: Calculate and Map Distances Between Phylogenetic Trees (Version 2.9.2)	2020
celltrackR: Motion Trajectory Analysis (Version 1.2.1)	2020
doc2vec: Distributed Representations of Sentences, Documents and Topics (Version 0.2.0)	2020
rbiom: Read/Write, Analyze, and Visualize 'BIOM' Data (Version 2.0.13)	2020
sccore: Core Utilities for Single-Cell RNA-Seq (Version 1.0.5)	2020
textplot: Text Plots (Version 0.2.2)	2020
EmbedSOM: Fast Embedding Guided by Self-Organizing Map (Version 2.2)	2019
dyndimred: Dimensionality Reduction Methods in a Common Format (Version 1.0.4)	2019
graphlayouts: Additional Layout Algorithms for Network Visualizations (Version 1.2.2)	2019
iCellR: Analyzing High-Throughput Single Cell Sequencing Data (Version 1.6.7)	2019
embed: Extra Recipes for Encoding Predictors (Version 1.1.5)	2018
solitude: An Implementation of Isolation Forest (Version 1.1.3)	2018
ProjectionBasedClustering: Projection Based Clustering (Version 1.2.2)	2017
Seurat: Tools for Single Cell Genomics (Version 5.2.1)	2017

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