vcfR: Manipulate and Visualize VCF Data

Canonical link: https://rscholar.com/pkg/vcfR

Brian J. Knaus • Niklaus J. Grunwald • Eric C. Anderson • David J. Winter • Zhian N. Kamvar • Javier F. Tabima • View description and downloads View dependencies GitHub project

2016 Published

1.15.0 Version

0 Citations

6 Authors

Referenced by ⇅	Year
LDheatmap: Graphical Display of Pairwise Linkage Disequilibria Between SNPs (Version 1.0-6)	2005
perfectphyloR: Reconstruct Perfect Phylogenies from DNA Sequence Data (Version 0.2.1)	2019
prewas: Data Pre-Processing for Bacterial Genome-Wide Association Studies (Version 1.1.1)	2020
utr.annotation: Annotate Variants in the Untranslated Regions (Version 1.0.4)	2021
epinetr: Epistatic Network Modelling with Forward-Time Simulation (Version 0.96)	2020
GARCOM: Gene and Region Counting of Mutations ("GARCOM") (Version 1.2.2)	2020
GenomeAdmixR: Simulate Admixture of Genomes (Version 2.1.7)	2021
MixviR: Analysis and Exploration of Mixed Microbial Genomic Samples (Version 3.5.0)	2022
MoBPS: Modular Breeding Program Simulator (Version 1.6.64)	2020
PopGenHelpR: Streamline Population Genomic and Genetic Analyses (Version 1.3.2)	2023
RADstackshelpR: Optimize the De Novo Stacks Pipeline via R (Version 0.1.0)	2021
SNPfiltR: Interactively Filter SNP Datasets (Version 1.0.1)	2021
coreCollection: Core Collection (Version 0.9.5)	2022
dartR.base: Analysing 'SNP' and 'Silicodart' Data - Basic Functions (Version 0.98)	2023
dartR: Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis (Version 2.9.7)	2017
diemr: Diagnostic Index Expectation Maximisation in R (Version 1.4.1)	2022
geneHapR: Gene Haplotype Statistics, Phenotype Association and Visualization (Version 1.2.4)	2022
mappoly: Genetic Linkage Maps in Autopolyploids (Version 0.4.1)	2020
numbat: Haplotype-Aware CNV Analysis from scRNA-Seq (Version 1.4.2)	2022
onemap: Construction of Genetic Maps in Experimental Crosses (Version 3.0.0)	2008
pcadapt: Fast Principal Component Analysis for Outlier Detection (Version 4.4.0)	2015
rehh: Searching for Footprints of Selection using 'Extended Haplotype Homozygosity' Based Tests (Version 3.2.2)	2012
sequoia: Pedigree Inference from SNPs (Version 2.11.2)	2017
vivaldi: Viral Variant Location and Diversity (Version 1.0.1)	2022
whoa: Evaluation of Genotyping Error in Genotype-by-Sequencing Data (Version 0.0.2)	2019
wingen: Continuous Mapping of Genetic Diversity (Version 2.1.2)	2024

RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN). Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.