Referenced by ⇅
Year
ACDC : Analysis of Congruent Diversification Classes (Version 1.0.0)
2022
BacArena : Modeling Framework for Cellular Communities in their
Environments (Version 1.8.2)
2015
briskaR : Biological Risk Assessment (Version 1.0.4)
2016
bvpSolve : Solvers for Boundary Value Problems of Differential Equations (Version 1.4.4)
2009
CausalKinetiX : Learning Stable Structures in Kinetic Systems (Version 0.2.1)
2019
deTestSet : Test Set for Differential Equations (Version 1.1.7.4)
2011
epcc : Simulating Populations of Ectotherms under Global Warming (Version 1.4.7)
2021
GPoM.FDLyapu : Lyapunov Exponents and Kaplan-Yorke Dimension (Version 1.0)
2019
microsamplingDesign : Finding Optimal Microsampling Designs for Non-Compartmental
Pharmacokinetic Analysis (Version 1.0.8)
2018
exDE : Extensible Differential Equations for Mosquito-Borne Pathogen
Modeling (Version 1.0.0)
2022
idmodelr : Infectious Disease Model Library and Utilities (Version 0.4.0)
2019
ARGOS : Automatic Regression for Governing Equations (ARGOS) (Version 0.1.1)
2023
ATNr : Run Allometric Trophic Networks Models (Version 1.1.0)
2022
AquaEnv : Integrated Development Toolbox for Aquatic Chemical Model Generation (Version 1.0-4)
2009
AssetPricing : Optimal Pricing of Assets with Fixed Expiry Date (Version 1.0-3)
2012
BioCro : Modular Crop Growth Simulations (Version 3.1.3)
2024
CRABS : Congruent Rate Analyses in Birth-Death Scenarios (Version 1.2.0)
2022
CollocInfer : Collocation Inference for Dynamic Systems (Version 1.0.5)
2010
DAISIE : Dynamical Assembly of Islands by Speciation, Immigration and Extinction (Version 4.4.1)
2015
DAMOCLES : Dynamic Assembly Model of Colonization, Local Extinction and Speciation (Version 2.3)
2014
DDD : Diversity-Dependent Diversification (Version 5.2.2)
2012
DIMORA : Diffusion Models R Analysis (Version 0.3.6)
2018
DSAIDE : Dynamical Systems Approach to Infectious Disease Epidemiology (Ecology/Evolution) (Version 0.9.6)
2017
DSAIRM : Dynamical Systems Approach to Immune Response Modeling (Version 0.9.6)
2018
DivE : Diversity Estimator (Version 1.3)
2014
EpiDynamics : Dynamic Models in Epidemiology (Version 0.3.1)
2014
EpiModel : Mathematical Modeling of Infectious Disease Dynamics (Version 2.5.0)
2013
EvolutionaryGames : Important Concepts of Evolutionary Game Theory (Version 0.1.2)
2017
FME : A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis (Version 1.3.6.3)
2009
GPoM : Generalized Polynomial Modelling (Version 1.4)
2017
LoopDetectR : Comprehensive Feedback Loop Detection in ODE Models (Version 0.1.2)
2020
MGDrivE2 : Mosquito Gene Drive Explorer 2 (Version 2.1.0)
2020
ODEnetwork : Network of Differential Equations (Version 1.3.2)
2018
ODEsensitivity : Sensitivity Analysis of Ordinary Differential Equations (Version 1.1.2)
2018
PBD : Protracted Birth-Death Model of Diversification (Version 1.4)
2014
PBSmodelling : GUI Tools Made Easy: Interact with Models and Explore Data (Version 2.69.3)
2006
PFIM : Population Fisher Information Matrix (Version 6.1)
2022
PopED : Population (and Individual) Optimal Experimental Design (Version 0.7.0)
2014
RLumModel : Solving Ordinary Differential Equations to Understand Luminescence (Version 0.2.10)
2016
RPANDA : Phylogenetic ANalyses of DiversificAtion (Version 2.3)
2014
ReacTran : Reactive Transport Modelling in 1d, 2d and 3d (Version 1.4.3.1)
2009
Sim.DiffProc : Simulation of Diffusion Processes (Version 4.9)
2011
SoilR : Models of Soil Organic Matter Decomposition (Version 1.2.107)
2012
StrathE2E2 : End-to-End Marine Food Web Model (Version 3.3.0)
2020
TDCor : Gene Network Inference from Time-Series Transcriptomic Data (Version 0.1-2)
2015
TESS : Diversification Rate Estimation and Fast Simulation of Reconstructed Phylogenetic Trees under Tree-Wide Time-Heterogeneous Birth-Death Processes Including Mass-Extinction Events (Version 2.1.2)
2012
TIMP : Fitting Separable Nonlinear Models in Spectroscopy and Microscopy (Version 1.13.6)
2007
TrenchR : Tools for Microclimate and Biophysical Ecology (Version 1.1.1)
2022
ZeBook : Working with Dynamic Models for Agriculture and Environment (Version 1.1)
2013
asbio : A Collection of Statistical Tools for Biologists (Version 1.9-7)
2010
asteRisk : Computation of Satellite Position (Version 1.4.3)
2021
biogrowth : Modelling of Population Growth (Version 1.0.5)
2020
bioinactivation : Mathematical Modelling of (Dynamic) Microbial Inactivation (Version 1.2.3)
2015
cOde : Automated C Code Generation for 'deSolve', 'bvpSolve' (Version 1.1.1)
2015
calibrar : Automated Parameter Estimation for Complex Models (Version 0.9.0)
2016
capm : Companion Animal Population Management (Version 0.14.0)
2014
care4cmodel : Carbon-Related Assessment of Silvicultural Concepts (Version 1.0.2)
2023
chouca : A Stochastic Cellular Automaton Engine (Version 0.1.99)
2024
covid19.analytics : Load and Analyze Live Data from the COVID-19 Pandemic (Version 2.1.3.3)
2020
cvasi : Calibration, Validation, and Simulation of TKTD Models (Version 1.2.0)
2024
dMod : Dynamic Modeling and Parameter Estimation in ODE Models (Version 1.0.2)
2015
dde : Solve Delay Differential Equations (Version 1.0.7)
2019
deBInfer : Bayesian Inference for Differential Equations (Version 0.4.4)
2016
deBif : Bifurcation Analysis of Ordinary Differential Equation Systems (Version 0.1.8)
2022
deFit : Fitting Differential Equations to Time Series Data (Version 0.3.0)
2023
denim : Generate and Simulate Deterministic Discrete-Time Compartmental Models (Version 1.0.0)
2024
diversitree : Comparative 'Phylogenetic' Analyses of Diversification (Version 0.10-1)
2010
doremi : Dynamics of Return to Equilibrium During Multiple Inputs (Version 1.0.0)
2018
dynr : Dynamic Models with Regime-Switching (Version 0.1.16-105)
2016
ecolMod : "A Practical Guide to Ecological Modelling - Using R as a Simulation Platform" (Version 1.2.6.4)
2008
ecosim : Toolbox for Aquatic Ecosystem Modeling (Version 1.3-4)
2013
ecostatscale : Statistical Scaling Functions for Ecological Systems (Version 1.1)
2021
embryogrowth : Tools to Analyze the Thermal Reaction Norm of Embryo Growth (Version 9.5)
2014
epifitter : Analysis and Simulation of Plant Disease Progress Curves (Version 0.3.0)
2020
epimdr : Functions and Data for "Epidemics: Models and Data in R" (Version 0.6-5)
2018
epimdr2 : Functions and Data for "Epidemics: Models and Data in R (2nd Edition)" (Version 1.0-9)
2022
evoper : Evolutionary Parameter Estimation for 'Repast Simphony' Models (Version 0.5.0)
2016
fastbeta : Fast Approximation of Time-Varying Infectious Disease Transmission Rates (Version 0.3.0)
2023
fda : Functional Data Analysis (Version 6.2.0)
2003
fitode : Tools for Ordinary Differential Equations Model Fitting (Version 0.1.1)
2022
flexsurv : Flexible Parametric Survival and Multi-State Models (Version 2.3.2)
2011
gauseR : Lotka-Volterra Models for Gause's 'Struggle for Existence' (Version 1.2)
2020
geiger : Analysis of Evolutionary Diversification (Version 2.0.11)
2007
grandR : Comprehensive Analysis of Nucleotide Conversion Sequencing Data (Version 0.2.5)
2022
greta.dynamics : Modelling Structured Dynamical Systems in 'greta' (Version 0.2.0)
2022
growthrates : Estimate Growth Rates from Experimental Data (Version 0.8.4)
2016
hgm : Holonomic Gradient Method and Gradient Descent (Version 1.23)
2015
hisse : Hidden State Speciation and Extinction (Version 2.1.11)
2015
hmer : History Matching and Emulation Package (Version 1.6.0)
2022
httk : High-Throughput Toxicokinetics (Version 2.4.0)
2015
hypergeo : The Gauss Hypergeometric Function (Version 1.2-13)
2008
icmstate : Interval Censored Multi-State Models (Version 0.1.1)
2024
idopNetwork : A Network Tool to Dissect Spatial Community Ecology (Version 0.1.2)
2022
isobxr : Stable Isotope Box Modelling in R (Version 2.0.0)
2021
landsepi : Landscape Epidemiology and Evolution (Version 1.5.1)
2018
lemna : Lemna Ecotox Effect Model (Version 1.0.1)
2021
magi : MAnifold-Constrained Gaussian Process Inference (Version 1.2.4)
2021
microPop : Process-Based Modelling of Microbial Populations (Version 1.6)
2017
mistral : Methods in Structural Reliability (Version 2.2.2)
2013
mizer : Dynamic Multi-Species Size Spectrum Modelling (Version 2.5.3)
2013
mkin : Kinetic Evaluation of Chemical Degradation Data (Version 1.2.6)
2010
morse : Modelling Reproduction and Survival Data in Ecotoxicology (Version 3.3.4)
2014
mvDFA : Multivariate Detrended Fluctuation Analysis (Version 0.0.4)
2023
neuRosim : Simulate fMRI Data (Version 0.2-14)
2010
nhm : Non-Homogeneous Markov and Hidden Markov Multistate Models (Version 0.1.1)
2019
odeGUTS : Solve ODE for GUTS-RED-SD and GUTS-RED-IT Using Compiled Code (Version 1.0.3)
2021
odin : ODE Generation and Integration (Version 1.2.6)
2019
pCODE : Estimation of an Ordinary Differential Equation Model by Parameter Cascade Method (Version 0.9.4)
2019
paropt : Parameter Optimizing of ODE-Systems (Version 0.3.3)
2020
phaseR : Phase Plane Analysis of One- And Two-Dimensional Autonomous ODE Systems (Version 2.2.1)
2013
pksensi : Global Sensitivity Analysis in Physiologically Based Kinetic Modeling (Version 1.2.3)
2018
pomp : Statistical Inference for Partially Observed Markov Processes (Version 5.11)
2007
primer : Functions and Data for the Book, a Primer of Ecology with R (Version 1.2.0)
2009
r2sundials : Wrapper for 'SUNDIALS' Solving ODE and Sensitivity Problem (Version 6.5.0-5)
2020
raem : Analytic Element Modeling of Steady Single-Layer Groundwater Flow (Version 0.1.0)
2024
readsdr : Translate Models from System Dynamics Software into 'R' (Version 0.3.0)
2020
rodeo : A Code Generator for ODE-Based Models (Version 0.8.2)
2016
rstpm2 : Smooth Survival Models, Including Generalized Survival Models (Version 1.6.6)
2015
rties : Modeling Interpersonal Dynamics (Version 5.0.0)
2020
scaRabee : Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models (Version 1.1-4)
2010
seeds : Estimate Hidden Inputs using the Dynamic Elastic Net (Version 0.9.1)
2020
sensobol : Computation of Variance-Based Sensitivity Indices (Version 1.1.5)
2019
serosv : Model Infectious Disease Parameters from Serosurveys (Version 1.0.1)
2024
shinySIR : Interactive Plotting for Mathematical Models of Infectious Disease Spread (Version 0.1.2)
2020
shinytest2 : Testing for Shiny Applications (Version 0.3.2)
2022
simecol : Simulation of Ecological (and Other) Dynamic Systems (Version 0.8-14)
2006
simode : Statistical Inference for Systems of Ordinary Differential Equations using Separable Integral-Matching (Version 1.2.2)
2018
smfsb : Stochastic Modelling for Systems Biology (Version 1.5)
2011
snvecR : Calculate Earth’s Obliquity and Precession in the Past (Version 3.9.4)
2023
soilassessment : Assessment Models for Agriculture Soil Conditions and Crop Suitability (Version 0.2.6)
2019
soilfoodwebs : Soil Food Web Analysis (Version 1.0.2)
2023
spdynmod : Spatio-Dynamic Wetland Plant Communities Model (Version 1.1.6)
2014
stagePop : Modelling the Population Dynamics of a Stage-Structured Species in Continuous Time (Version 1.1-2)
2015
streambugs : Parametric Ordinary Differential Equations Model of Growth, Death, and Respiration of Macroinvertebrate and Algae Taxa (Version 1.4)
2017
takos : Analysis of Differential Calorimetry Scans (Version 0.2.0)
2018
tdsa : Time-Dependent Sensitivity Analysis (Version 1.1-0)
2023
tfNeuralODE : Create Neural Ordinary Differential Equations with 'tensorflow' (Version 0.1.0)
2023
tseriesChaos : Analysis of Nonlinear Time Series (Version 0.1-13.1)
2005
ubiquity : PKPD, PBPK, and Systems Pharmacology Modeling Tools (Version 2.0.3)
2019
waydown : Computation of Approximate Potentials for Weakly Non-Gradient Fields (Version 1.1.0)
2021
Showing 1-140 of 140
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