Referenced by ⇅
Year
biosurvey : Tools for Biological Survey Planning (Version 0.1.1)
2021
bnspatial : Spatial Implementation of Bayesian Networks and Mapping (Version 1.1.1)
2016
ccdf : Distribution-Free Single-Cell Differential Expression Analysis (Version 1.1.4)
2021
censusxy : Access the U.S. Census Bureau"s Geocoding A.P.I. System (Version 1.1.1)
2019
chickn : "Compressive" Hierarchical Kernel Clustering Toolbox (Version 1.2.3)
2020
clustDRM : Clustering Dose-Response Curves and Fitting Appropriate Models
to Them (Version 0.1-0)
2019
clusterPower : Power Calculations for Cluster-Randomized and Cluster-Randomized
Crossover Trials (Version 0.7.0)
2011
DCD : Differential Community Detection in Paired Biological Networks (Version 0.1.0)
2017
DistributionFitR : Fitting Multiple Parametric Distributions (Version 0.1)
2020
dnet : Integrative Analysis of Omics Data in Terms of Network,
Evolution and Ontology (Version 1.1.7)
2014
dtwSat : Time-Weighted Dynamic Time Warping for Satellite Image Time
Series Analysis (Version 1.0.0)
2015
feamiR : Classification and Feature Selection for microRNA/mRNA
Interactions (Version 0.1.0)
2021
GWPR.light : Geographically Weighted Panel Regression (Version 0.2.1)
2021
HDtest : High Dimensional Hypothesis Testing for Mean Vectors, Covariance
Matrices, and White Noise of Vector Time Series (Version 2.1)
2016
hybridEnsemble : Build, Deploy and Evaluate Hybrid Ensembles (Version 1.7.9)
2013
idmTPreg : Regression Model for Progressive Illness Death Data (Version 1.1)
2017
IFAA : Robust Inference for Absolute Abundance in Microbiome Analysis (Version 1.1.2)
2020
inlmisc : Miscellaneous Functions for the USGS INL Project Office (Version 0.5.5)
2016
liGP : Locally Induced Gaussian Process Regression (Version 1.0.1)
2021
mbclusterwise : Clusterwise Multiblock Analyses (Version 1.0)
2016
minimaxdesign : Minimax and Minimax Projection Designs (Version 0.1.5)
2016
molic : Multivariate Outlier Detection in Contingency Tables (Version 2.0.3)
2020
MoMPCA : Inference and Clustering for Mixture of Multinomial Principal
Component Analysis (Version 1.0.1)
2020
odpc : One-Sided Dynamic Principal Components (Version 2.0.5)
2017
ORdensity : Identification of Differentially Expressed Genes (Version 1.0)
2020
parallelML : A Parallel-Voting Algorithm for many Classifiers (Version 1.2)
2015
pcoxtime : Penalized Cox Proportional Hazard Model for Time-Dependent
Covariates (Version 1.0.4)
2021
penDvine : Flexible Pair-Copula Estimation in D-Vines using Bivariate
Penalized Splines (Version 0.2.4)
2012
piRF : Prediction Intervals for Random Forests (Version 0.1.0)
2020
pspline.inference : Estimation of Characteristics of Seasonal and Sporadic
Infectious Disease Outbreaks Using Generalized Additive
Modeling with Penalized Basis Splines (Version 1.0.4)
2020
qualypsoss : Uncertainties of Climate Projections using Smoothing Splines (Version 1.1.1)
2019
R.SamBada : Processing Pipeline for "SamBada" from Pre- To Post-Processing (Version 0.1.3)
2019
RAEN : Random Approximate Elastic Net (RAEN) Variable Selection Method (Version 0.2)
2021
Rlda : Bayesian LDA for Mixed-Membership Clustering Analysis (Version 0.2.6)
2017
scTEP : Single-Cell Trajectory Inference using Ensemble Pseudotimes (Version 0.1.0)
2022
sen2r : Find, Download and Process Sentinel-2 Data (Version 1.6.0)
2019
sglOptim : Generic Sparse Group Lasso Solver (Version 1.3.8)
2013
SimRVPedigree : Simulate Pedigrees Ascertained for a Rare Disease (Version 0.4.4)
2017
smog : Structural Modeling by using Overlapped Group Penalty (Version 2.1.0)
2019
tempoR : Characterizing Temporal Dysregulation (Version 1.0.4.4)
2019
utr.annotation : Annotate Variants in the Untranslated Regions (Version 1.0.4)
2021
WEE : Weighted Estimated Equation (WEE) Approaches in Genetic
Case-Control Studies (Version 1.0)
2016
lpjmlkit : Toolkit for Basic LPJmL Handling (Version 1.0.11)
2023
eiCompare : Compares Different Ecological Inference Methods (Version 3.0.4)
2016
ExprNet : Characterizing Differential Expression of Selected Edges on a
Network (Version 1.0.0)
2023
stUPscales : Spatio-Temporal Uncertainty Propagation Across Multiple Scales (Version 1.0.3.5)
2018
armada : A Statistical Methodology to Select Covariates in High-Dimensional Data under Dependence (Version 0.1.0)
2019
comradesOO : Analysis of COMRADES (Cross-Linking Matched RNA and Deep Sequencing) Data (Version 0.1.1)
2023
rDNAse : Generating Various Numerical Representation Schemes of DNA Sequences (Version 1.1-1)
2016
NADIA : NA Data Imputation Algorithms (Version 0.4.2)
2020
StrucDiv : Spatial Structural Diversity Quantification in Raster Data (Version 0.2.1)
2022
GLIDE : Global and Individual Tests for Direct Effects (Version 1.0.5)
2017
HTSSIP : High Throughput Sequencing of Stable Isotope Probing Data Analysis (Version 1.4.1)
2016
MXM : Feature Selection (Including Multiple Solutions) and Bayesian Networks (Version 1.5.5)
2014
MetaLonDA : Metagenomics Longitudinal Differential Abundance Method (Version 1.1.8)
2017
GiNA : High Throughput Phenotyping (Version 1.0.1)
2016
dartR : Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis (Version 2.9.9.5)
2017
ExpImage : Analysis of Images in Experiments (Version 0.10.1)
2021
seeker : Simplified Fetching and Processing of Microarray and RNA-Seq Data (Version 1.1.6)
2022
sparsevar : Sparse VAR (Vector Autoregression) / VECM (Vector Error Correction Model) Estimation (Version 1.0.0)
2016
cpmBigData : Fitting Semiparametric Cumulative Probability Models for Big Data (Version 0.0.2)
2023
ormBigData : Fitting Semiparametric Cumulative Probability Models for Big Data (Version 0.0.1)
2021
clinDR : Simulation and Analysis Tools for Clinical Dose Response Modeling (Version 2.5.2)
2017
clordr : Composite Likelihood Inference and Diagnostics for Replicated Spatial Ordinal Data (Version 1.7.0)
2018
ADAPTS : Automated Deconvolution Augmentation of Profiles for Tissue Specific Cells (Version 1.0.22)
2019
ADMMsigma : Penalized Precision Matrix Estimation via ADMM (Version 2.1)
2018
APIS : Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents (Version 2.0.8)
2019
AlignLV : Multiple Group Item Response Theory Alignment Helpers for 'lavaan' and 'mirt' (Version 0.1.0.0)
2024
BIEN : Tools for Accessing the Botanical Information and Ecology Network Database (Version 1.2.7)
2017
BMTAR : Bayesian Approach for MTAR Models with Missing Data (Version 0.1.1)
2020
BSGW : Bayesian Survival Model with Lasso Shrinkage Using Generalized Weibull Regression (Version 0.9.4)
2014
BVSNLP : Bayesian Variable Selection in High Dimensional Settings using Nonlocal Priors (Version 1.1.9)
2017
BayesBinMix : Bayesian Estimation of Mixtures of Multivariate Bernoulli Distributions (Version 1.4.1)
2016
BeeGUTS : General Unified Threshold Model of Survival for Bees using Bayesian Inference (Version 1.5.0)
2022
BlockMissingData : Integrating Multi-Source Block-Wise Missing Data in Model Selection (Version 0.1.0)
2023
CARRoT : Predicting Categorical and Continuous Outcomes Using One in Ten Rule (Version 3.0.2)
2018
CICI : Causal Inference with Continuous (Multiple Time Point) Interventions (Version 0.9.8)
2023
CIDER : Meta-Clustering for scRNA-Seq Integration and Evaluation (Version 0.99.4)
2021
CNVScope : A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization (Version 3.7.2)
2018
ClusROC : ROC Analysis in Three-Class Classification Problems for Clustered Data (Version 1.0.3)
2022
CopulaInference : Estimation and Goodness-of-Fit of Copula-Based Models with Arbitrary Distributions (Version 0.5.0)
2023
CptNonPar : Nonparametric Change Point Detection for Multivariate Time Series (Version 0.3.2)
2023
DAISIE : Dynamical Assembly of Islands by Speciation, Immigration and Extinction (Version 4.6.0)
2015
DCSmooth : Nonparametric Regression and Bandwidth Selection for Spatial Models (Version 1.1.2)
2021
DEHOGT : Differentially Expressed Heterogeneous Overdispersion Gene Test for Count Data (Version 0.99.0)
2024
E4tools : Management and Processing Tools for Data Produced by the Empatica E4 (Version 0.1.1)
2019
EBASE : Estuarine Bayesian Single-Station Estimation Method for Ecosystem Metabolism (Version 1.1.0)
2024
EFDR : Wavelet-Based Enhanced FDR for Detecting Signals from Complete or Incomplete Spatially Aggregated Data (Version 1.3)
2015
EZtune : Tunes AdaBoost, Elastic Net, Support Vector Machines, and Gradient Boosting Machines (Version 3.1.1)
2018
EmiStatR : Emissions and Statistics in R for Wastewater and Pollutants in Combined Sewer Systems (Version 1.2.3.0)
2016
EnsembleBase : Extensible Package for Parallel, Batch Training of Base Learners for Ensemble Modeling (Version 1.0.4)
2014
EpiSemble : Ensemble Based Machine Learning Approach for Predicting Methylation States (Version 0.1.1)
2022
FSelectorRcpp : 'Rcpp' Implementation of 'FSelector' Entropy-Based Feature Selection Algorithms with a Sparse Matrix Support (Version 0.3.13)
2017
GAGBLUP : Genetic Algorithm Assisted Genomic Best Liner Unbiased Prediction (Version 1.0)
2023
GFDmcv : General Hypothesis Testing Problems for Multivariate Coefficients of Variation (Version 0.1.0)
2023
GGMnonreg : Non-Regularized Gaussian Graphical Models (Version 1.0.0)
2021
GPM : Gaussian Process Modeling of Multi-Response and Possibly Noisy Datasets (Version 3.0.1)
2018
GWEX : Multi-Site Stochastic Models for Daily Precipitation and Temperature (Version 1.1.3)
2019
GaussianHMM1d : Inference, Goodness-of-Fit and Forecast for Univariate Gaussian Hidden Markov Models (Version 1.1.2)
2019
GenoPop : Genotype Imputation and Population Genomics Efficiently from Variant Call Formatted (VCF) Files (Version 1.0.0)
2024
HDCI : High Dimensional Confidence Interval Based on Lasso and Bootstrap (Version 1.0-2)
2017
HMMcopula : Markov Regime Switching Copula Models Estimation and Goodness-of-Fit (Version 1.1.0)
2018
HMP : Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP (Version 2.0.1)
2011
HMPTrees : Statistical Object Oriented Data Analysis of RDP-Based Taxonomic Trees from Human Microbiome Data (Version 1.4)
2011
HetSeq : Identifying Modulators of Cellular Responses Leveraging Intercellular Heterogeneity (Version 0.1.0)
2025
Information : Data Exploration with Information Theory (Weight-of-Evidence and Information Value) (Version 0.0.9)
2015
InteractionPoweR : Power Analyses for Interaction Effects in Cross-Sectional Regressions (Version 0.2.2)
2022
JMbayes : Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach (Version 0.9-0)
2012
LCAvarsel : Variable Selection for Latent Class Analysis (Version 1.1)
2017
LSEbootLS : Bootstrap Methods for Regression Models with Locally Stationary Errors (Version 0.1.0)
2024
MAPITR : MArginal ePIstasis Test for Regions (Version 1.1.2)
2020
MDBED : Moran-Downton Bivariate Exponential Distribution (Version 1.0.0)
2020
MDDC : Modified Detecting Deviating Cells Algorithm in Pharmacovigilance (Version 1.1.0)
2024
MERO : Performing Monte Carlo Expectation Maximization Random Forest Imputation for Biological Data (Version 0.1.2)
2022
MG1StationaryProbability : Computes Stationary Distribution for M/G/1 Queuing System (Version 0.1.2)
2023
MSmix : Finite Mixtures of Mallows Models with Spearman Distance for Full and Partial Rankings (Version 2.0.0)
2024
MarZIC : Marginal Mediation Effects with Zero-Inflated Compositional Mediator (Version 1.0.1)
2023
MetabolSSMF : Simplex-Structured Matrix Factorisation for Metabolomics Analysis (Version 0.1.0)
2025
MixRF : A Random-Forest-Based Approach for Imputing Clustered Incomplete Data (Version 1.0)
2016
MonoInc : Monotonic Increasing (Version 1.1)
2016
Morpho : Calculations and Visualisations Related to Geometric Morphometrics (Version 2.13)
2013
NCC : Simulation and Analysis of Platform Trials with Non-Concurrent Controls (Version 1.0)
2023
NMF : Algorithms and Framework for Nonnegative Matrix Factorization (NMF) (Version 0.28)
2009
NPflow : Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry Data (Version 0.13.6)
2016
NetFACS : Network Applications to Facial Communication Data (Version 0.5.0)
2021
NetworkToolbox : Methods and Measures for Brain, Cognitive, and Psychometric Network Analysis (Version 1.4.4)
2017
NonParRolCor : a Non-Parametric Statistical Significance Test for Rolling Window Correlation (Version 0.8.0)
2021
PAsso : Assessing the Partial Association Between Ordinal Variables (Version 0.1.10)
2020
PQLseq : Efficient Mixed Model Analysis of Count Data in Large-Scale Genomic Sequencing Studies (Version 1.2.1)
2018
PanelMatch : Matching Methods for Causal Inference with Time-Series Cross-Sectional Data (Version 3.1.3)
2020
QTL.gCIMapping.GUI : QTL Genome-Wide Composite Interval Mapping with Graphical User Interface (Version 2.1.1)
2018
QuadratiK : Collection of Methods Constructed using Kernel-Based Quadratic Distances (Version 1.1.3)
2024
QurvE : Robust and User-Friendly Analysis of Growth and Fluorescence Curves (Version 1.1.2)
2023
RGBM : LS-TreeBoost and LAD-TreeBoost for Gene Regulatory Network Reconstruction (Version 1.0-11)
2017
RMSDp : Refined Modified Stahel-Donoho (MSD) Estimators for Outlier Detection (Parallel Version) (Version 0.1.1)
2023
RMixtCompIO : Minimal Interface of the C++ 'MixtComp' Library for Mixture Models with Heterogeneous and (Partially) Missing Data (Version 4.0.11)
2019
RPDTest : A New Type of Test Statistic and Method for Multinomial Goodness-of-Fit Test (Version 0.0.2)
2023
RPPASPACE : Reverse-Phase Protein Array Super Position and Concentration Evaluation (Version 1.0.10)
2020
RZooRoH : Partitioning of Individual Autozygosity into Multiple Homozygous-by-Descent Classes (Version 0.4.1)
2018
Rcrawler : Web Crawler and Scraper (Version 0.1.9-1)
2017
Rnmr1D : Perform the Complete Processing of a Set of Proton Nuclear Magnetic Resonance Spectra (Version 1.3.2)
2018
Robyn : Semi-Automated Marketing Mix Modeling (MMM) from Meta Marketing Science (Version 3.12.1)
2022
Rrepest : An Analyzer of International Large Scale Assessments in Education (Version 1.6.9)
2023
SAiVE : Functions Used for SAiVE Group Research, Collaborations, and Publications (Version 1.0.6)
2024
SIBERG : Systematic Identification of Bimodally Expressed Genes Using RNAseq Data (Version 2.0.4)
2017
SNPannotator : Automated Functional Annotation of Genetic Variants and Linked Proxies (Version 1.4.6)
2022
SPIChanges : Improves the Interpretation of the Standardized Precipitation Index Under Changing Climate Conditions (Version 0.2.1)
2025
SSLR : Semi-Supervised Classification, Regression and Clustering Methods (Version 0.9.3.3)
2020
SVEMnet : Self-Validated Ensemble Models with Lasso and Relaxed Elastic Net Regression (Version 3.1.4)
2024
SamplingStrata : Optimal Stratification of Sampling Frames for Multipurpose Sampling Surveys (Version 1.5-5)
2011
SemiPar.depCens : Copula Based Cox Proportional Hazards Models for Dependent Censoring (Version 0.1.3)
2024
SeqExpMatch : Sequential Experimental Design via Matching on-the-Fly (Version 0.1.0)
2021
SpaTopic : Topic Inference to Identify Tissue Architecture in Multiplexed Images (Version 1.2.0)
2024
Sstack : Bootstrap Stacking of Random Forest Models for Heterogeneous Data (Version 1.0.1)
2018
TRexSelector : T-Rex Selector: High-Dimensional Variable Selection & FDR Control (Version 1.0.0)
2022
TempStable : A Collection of Methods to Estimate Parameters of Different Tempered Stable Distributions (Version 0.2.2)
2023
TextForecast : Regression Analysis and Forecasting Using Textual Data from a Time-Varying Dictionary (Version 0.1.3)
2019
TopKSignal : A Convex Optimization Tool for Signal Reconstruction from Multiple Ranked Lists (Version 1.0)
2024
VARcpDetectOnline : Sequential Change Point Detection for High-Dimensional VAR Models (Version 0.2.0)
2025
VertexWiseR : Simplified Vertex-Wise Analyses of Whole-Brain and Hippocampal Surface (Version 1.4.5)
2024
ade4 : Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences (Version 1.7-23)
2002
adjustedCurves : Confounder-Adjusted Survival Curves and Cumulative Incidence Functions (Version 0.11.3)
2022
aihuman : Experimental Evaluation of Algorithm-Assisted Human Decision-Making (Version 1.0.1)
2023
antaresRead : Import, Manipulate and Explore the Results of an 'Antares' Simulation (Version 2.9.3)
2017
asremlPlus : Augments 'ASReml-R' in Fitting Mixed Models and Packages Generally in Exploring Prediction Differences (Version 4.4.55)
2015
assignPOP : Population Assignment using Genetic, Non-Genetic or Integrated Data in a Machine Learning Framework (Version 1.3.1)
2016
autohrf : Automated Generation of Data-Informed GLM Models in Task-Based fMRI Data Analysis (Version 1.1.3)
2022
avotrex : A Global Dataset of Anthropogenic Extinct Birds and their Traits: Phylogeny Builder (Version 1.3.0)
2024
baclava : Bayesian Analysis of Cancer Latency with Auxiliary Variable Augmentation (Version 1.1)
2024
baggingbwsel : Bagging Bandwidth Selection in Kernel Density and Regression Estimation (Version 1.1)
2021
betaclust : A Family of Beta Mixture Models for Clustering Beta-Valued DNA Methylation Data (Version 1.0.5)
2022
biclustermd : Biclustering with Missing Data (Version 0.2.3)
2019
bigDM : Scalable Bayesian Disease Mapping Models for High-Dimensional Data (Version 0.5.7)
2022
breakpoint : An R Package for Multiple Break-Point Detection via the Cross-Entropy Method (Version 1.2)
2014
bsitar : Bayesian Super Imposition by Translation and Rotation Growth Curve Analysis (Version 0.3.2)
2023
cape : Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice (Version 3.1.2)
2013
cauchypca : Robust Principal Component Analysis Using the Cauchy Distribution (Version 1.3)
2022
causalCmprsk : Nonparametric and Cox-Based Estimation of Average Treatment Effects in Competing Risks (Version 2.0.0)
2020
conStruct : Models Spatially Continuous and Discrete Population Genetic Structure (Version 1.0.6)
2018
condSURV : Estimation of the Conditional Survival Function for Ordered Multivariate Failure Time Data (Version 2.0.4)
2016
confintROB : Confidence Intervals for Robust and Classical Linear Mixed Model Estimators (Version 1.0-2)
2024
conformalClassification : Transductive and Inductive Conformal Predictions for Classification Problems (Version 1.0.0)
2017
contsurvplot : Visualize the Effect of a Continuous Variable on a Time-to-Event Outcome (Version 0.2.2)
2022
crosstalkr : Analysis of Graph-Structured Data with a Focus on Protein-Protein Interaction Networks (Version 1.0.5)
2021
csa : A Cross-Scale Analysis Tool for Model-Observation Visualization and Integration (Version 0.7.1)
2020
cutpointr : Determine and Evaluate Optimal Cutpoints in Binary Classification Tasks (Version 1.2.1)
2018
cvwrapr : Tools for Cross Validation (Version 1.0)
2021
dQTG.seq : A BSA Software for Detecting All Types of QTLs in BC, DH, RIL and F2 (Version 1.0.2)
2022
dendroNetwork : Create Networks of Dendrochronological Series using Pairwise Similarity (Version 0.5.5)
2024
diagL1 : Routines for Fit, Inference and Diagnostics in Linear L1 and LAD Models (Version 1.0.1)
2023
dtwclust : Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance (Version 6.0.0)
2015
dynamAedes : A Unified Mechanistic Model for the Population Dynamics of Invasive Aedes Mosquitoes (Version 2.2.9)
2022
ecpc : Flexible Co-Data Learning for High-Dimensional Prediction (Version 3.1.1)
2021
epizootic : Spatially Explicit Population Models of Disease Transmission in Wildlife (Version 2.0.0)
2024
fDMA : Dynamic Model Averaging and Dynamic Model Selection for Continuous Outcomes (Version 2.2.9)
2017
fabMix : Overfitting Bayesian Mixtures of Factor Analyzers with Parsimonious Covariance and Unknown Number of Components (Version 5.1)
2018
fdANOVA : Analysis of Variance for Univariate and Multivariate Functional Data (Version 0.1.2)
2017
fnets : Factor-Adjusted Network Estimation and Forecasting for High-Dimensional Time Series (Version 0.1.6)
2023
forensIT : Information Theory Tools for Forensic Analysis (Version 1.1.1)
2023
fsemipar : Estimation, Variable Selection and Prediction for Functional Semiparametric Models (Version 1.1.1)
2023
gamCopula : Generalized Additive Models for Bivariate Conditional Dependence Structures and Vine Copulas (Version 0.0-8)
2017
geoTS : Methods for Handling and Analyzing Time Series of Satellite Images (Version 0.1.10)
2020
glmm : Generalized Linear Mixed Models via Monte Carlo Likelihood Approximation (Version 1.4.5)
2015
gmtFD : General Multiple Tests for Univariate and Multivariate Functional Data (Version 0.1.0)
2024
groupedSurv : Efficient Estimation of Grouped Survival Models Using the Exact Likelihood Function (Version 1.0.5.1)
2018
hdbinseg : Change-Point Analysis of High-Dimensional Time Series via Binary Segmentation (Version 1.0.3)
2018
hettx : Fisherian and Neymanian Methods for Detecting and Measuring Treatment Effect Variation (Version 0.1.3)
2019
hybridModels : An R Package for the Stochastic Simulation of Disease Spreading in Dynamic Networks (Version 0.3.8)
2016
hypervolume : High Dimensional Geometry, Set Operations, Projection, and Inference Using Kernel Density Estimation, Support Vector Machines, and Convex Hulls (Version 3.1.6)
2013
iIneq : Computing Individual Components of the Gini and the Theil Indices (Version 1.0.2)
2020
icardaFIGSr : Subsetting using Focused Identification of the Germplasm Strategy (FIGS) (Version 1.0.2)
2021
iccTraj : Estimates the Intraclass Correlation Coefficient for Trajectory Data (Version 1.1.0)
2023
idiffomix : Integrated Differential Analysis of Multi Omics Data using a Joint Mixture Model (Version 1.0.0)
2025
immunarch : Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design in R (Version 0.10.3)
2020
intccr : Semiparametric Competing Risks Regression under Interval Censoring (Version 3.0.4)
2017
integIRTy : Integrating Multiple Modalities of High Throughput Assays Using Item Response Theory (Version 1.0.8)
2017
ivDiag : Estimation and Diagnostic Tools for Instrumental Variables Designs (Version 1.0.6)
2023
joineRML : Joint Modelling of Multivariate Longitudinal Data and Time-to-Event Outcomes (Version 0.4.7)
2016
knnp : Time Series Prediction using K-Nearest Neighbors Algorithm (Parallel) (Version 2.0.0)
2018
kyotil : Utility Functions for Statistical Analysis Report Generation and Monte Carlo Studies (Version 2024.11-01)
2013
ldmppr : Estimate and Simulate from Location Dependent Marked Point Processes (Version 1.1.1)
2024
limorhyde2 : Quantify Rhythmicity and Differential Rhythmicity in Genomic Data (Version 0.1.1)
2022
lsbclust : Least-Squares Bilinear Clustering for Three-Way Data (Version 1.1)
2015
markovMSM : Methods for Checking the Markov Condition in Multi-State Survival Data (Version 0.1.3)
2021
marqLevAlg : A Parallelized General-Purpose Optimization Based on Marquardt-Levenberg Algorithm (Version 2.0.8)
2012
metadeconfoundR : Covariate-Sensitive Analysis of Cross-Sectional High-Dimensional Data (Version 1.0.2)
2024
midasml : Estimation and Prediction Methods for High-Dimensional Mixed Frequency Time Series Data (Version 0.1.11)
2020
mnet : Modeling Group Differences and Moderation Effects in Statistical Network Models (Version 0.1.4)
2023
moc.gapbk : Multi-Objective Clustering Algorithm Guided by a-Priori Biological Knowledge (Version 0.1.3)
2019
modACDC : Association of Covariance for Detecting Differential Co-Expression (Version 2.0.1)
2023
momentuHMM : Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models (Version 1.5.8)
2017
mrMLM.GUI : Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for Genome-Wide Association Study with Graphical User Interface (Version 4.0.2)
2018
mtlgmm : Unsupervised Multi-Task and Transfer Learning on Gaussian Mixture Models (Version 0.1.0)
2022
multinomialLogitMix : Clustering Multinomial Count Data under the Presence of Covariates (Version 1.1)
2022
nestedmodels : Tidy Modelling for Nested Data (Version 1.1.0)
2022
npregfast : Nonparametric Estimation of Regression Models with Factor-by-Curve Interactions (Version 1.6.0)
2015
opdisDownsampling : Optimal Distribution Preserving Down-Sampling of Bio-Medical Data (Version 1.0.1)
2021
pGRN : Single-Cell RNA Sequencing Pseudo-Time Based Gene Regulatory Network Inference (Version 0.3.5)
2023
parafac4microbiome : Parallel Factor Analysis Modelling of Longitudinal Microbiome Data (Version 1.3.2)
2024
pencal : Penalized Regression Calibration (PRC) for the Dynamic Prediction of Survival (Version 2.3.0)
2020
pheble : Classifying High-Dimensional Phenotypes with Ensemble Learning (Version 0.1.0)
2023
pksensi : Global Sensitivity Analysis in Physiologically Based Kinetic Modeling (Version 1.2.3)
2018
pmartR : Panomics Marketplace - Quality Control and Statistical Analysis for Panomics Data (Version 2.5.1)
2023
pmparser : Create and Maintain a Relational Database of Data from PubMed/MEDLINE (Version 1.0.23)
2022
pomdp : Infrastructure for Partially Observable Markov Decision Processes (POMDP) (Version 1.2.5)
2018
poolfstat : Computing f-Statistics and Building Admixture Graphs Based on Allele Count or Pool-Seq Read Count Data (Version 3.0.0)
2018
predhy.GUI : Genomic Prediction of Hybrid Performance with Graphical User Interface (Version 2.1.1)
2023
protr : Generating Various Numerical Representation Schemes for Protein Sequences (Version 1.7-5)
2012
rSPDE : Rational Approximations of Fractional Stochastic Partial Differential Equations (Version 2.5.1)
2019
randomUniformForest : Random Uniform Forests for Classification, Regression and Unsupervised Learning (Version 1.1.6)
2014
riAFTBART : A Flexible Approach for Causal Inference with Multiple Treatments and Clustered Survival Outcomes (Version 0.3.3)
2022
riskRegression : Risk Regression Models and Prediction Scores for Survival Analysis with Competing Risks (Version 2025.09.17)
2011
rlfsm : Simulations and Statistical Inference for Linear Fractional Stable Motions (Version 1.1.2)
2018
sars : Fit and Compare Species-Area Relationship Models Using Multimodel Inference (Version 2.1.1)
2018
sdPrior : Scale-Dependent Hyperpriors in Structured Additive Distributional Regression (Version 1.0-0)
2015
segMGarch : Multiple Change-Point Detection for High-Dimensional GARCH Processes (Version 1.3)
2018
sensitivity : Global Sensitivity Analysis of Model Outputs and Importance Measures (Version 1.30.2)
2006
sentometrics : An Integrated Framework for Textual Sentiment Time Series Aggregation and Prediction (Version 1.0.1)
2017
sgdGMF : Estimation of Generalized Matrix Factorization Models via Stochastic Gradient Descent (Version 1.0.1)
2025
simMP : Simulate Somatic Mutations in Cancer Genomes from Mutational Processes (Version 0.17.3)
2017
skipTrack : A Bayesian Hierarchical Model that Controls for Non-Adherence in Mobile Menstrual Cycle Tracking (Version 0.2.0)
2024
skpr : Design of Experiments Suite: Generate and Evaluate Optimal Designs (Version 1.9.2)
2017
skyscapeR : Data Analysis and Visualization for Skyscape Archaeology (Version 1.0.0)
2017
spAbundance : Univariate and Multivariate Spatial Modeling of Species Abundance (Version 0.2.1)
2023
spBPS : Bayesian Predictive Stacking for Scalable Geospatial Transfer Learning (Version 0.0-4)
2024
spOccupancy : Single-Species, Multi-Species, and Integrated Spatial Occupancy Models (Version 0.8.0)
2021
spmoran : Fast Spatial and Spatio-Temporal Regression using Moran Eigenvectors (Version 0.3.3)
2017
ss3sim : Fisheries Stock Assessment Simulation Testing with Stock Synthesis (Version 1.0.3)
2014
stgam : Spatially and Temporally Varying Coefficient Models Using Generalized Additive Models (Version 1.1.0)
2024
sts : Estimation of the Structural Topic and Sentiment-Discourse Model for Text Analysis (Version 1.4)
2024
templateICAr : Estimate Brain Networks and Connectivity with ICA and Empirical Priors (Version 0.10.0)
2022
treesliceR : To Slice Phylogenetic Trees and Infer Evolutionary Patterns Over Time (Version 1.1.0)
2023
turboEM : A Suite of Convergence Acceleration Schemes for EM, MM and Other Fixed-Point Algorithms (Version 2025.1)
2011
twig : For Streamlining Decision and Economic Evaluation Models using Grammar of Modeling (Version 1.0.0.0)
2025
ukbtools : Manipulate and Explore UK Biobank Data (Version 0.11.3)
2017
varTestnlme : Variance Components Testing for Linear and Nonlinear Mixed Effects Models (Version 1.3.5)
2020
windfarmGA : Genetic Algorithm for Wind Farm Layout Optimization (Version 4.0.0)
2017
worldmet : Import Surface Meteorological Data from NOAA Integrated Surface Database (ISD) (Version 0.10.2)
2017
autoRasch : Semi-Automated Rasch Analysis (Version 0.2.2)
2022
covdepGE : Covariate Dependent Graph Estimation (Version 1.0.1)
2022
AICcPermanova : Model Selection of PERMANOVA Models Using AICc (Version 0.0.2)
2023
TransTGGM : Transfer Learning for Tensor Graphical Models (Version 1.0.0)
2022
gapfill : Fill Missing Values in Satellite Data (Version 0.9.6-1)
2016
igapfill : Interface for Gap-Filling Earth Observation Datasets (Version 0.0.41)
2025
poolABC : Approximate Bayesian Computation with Pooled Sequencing Data (Version 1.0.0)
2023
moreparty : A Toolbox for Conditional Inference Trees and Random Forests (Version 0.4.2)
2020
qtlpoly : Random-Effect Multiple QTL Mapping in Autopolyploids (Version 0.2.4)
2021
CPAT : Change Point Analysis Tests (Version 0.1.0)
2018
CircSpaceTime : Spatial and Spatio-Temporal Bayesian Model for Circular Data (Version 0.9.0)
2019
GPM
Datasets : (Version )
0
HEMDAG : Hierarchical Ensemble Methods for Directed Acyclic Graphs (Version 2.7.4)
2017
SNPknock : Knockoffs for Hidden Markov Models and Genetic Data (Version 0.8.2)
2017
VUROCS : Volume under the ROC Surface for Multi-Class ROC Analysis (Version 1.0)
2020
rSHAPE : Simulated Haploid Asexual Population Evolution (Version 0.3.2)
2019
Diderot : Bibliographic Network Analysis (Version 0.13)
2017
ESTER : Efficient Sequential Testing with Evidence Ratios (Version 0.2.0)
2017
ParBayesianOptimization : Parallel Bayesian Optimization of Hyperparameters (Version 1.2.6)
2018
autostats : Auto Stats (Version 0.4.2)
2021
gfiExtremes : Generalized Fiducial Inference for Extremes (Version 1.0.1)
2020
mgwrsar : GWR, Mixed GWR with Spatial Autocorrelation and Multiscale GWR (Top-Down Scale Approaches) (Version 1.3.1)
2018
serocalculator : Estimating Infection Rates from Serological Data (Version 1.4.0)
2024
ClassificationEnsembles : Automatically Builds 12 Classification Models (Version 0.7.1)
2025
ClustAssess : Tools for Assessing Clustering (Version 1.1.0)
2021
ClustVarLV : Clustering of Variables Around Latent Variables (Version 2.1.1)
2013
ClusterVAR : Fitting Latent Class Vector-Autoregressive (VAR) Models (Version 0.0.8)
2024
CoNI : Correlation Guided Network Integration (CoNI) (Version 0.1.0)
2021
CoTiMA : Continuous Time Meta-Analysis ('CoTiMA') (Version 1.0.2)
2021
CohortPlat : Simulation of Cohort Platform Trials for Combination Treatments (Version 1.0.5)
2021
Compositional : Compositional Data Analysis (Version 8.0)
2016
CompositionalClust : Clustering with Compositional Data (Version 1.2)
2025
CompositionalML : Machine Learning with Compositional Data (Version 1.0)
2024
CompositionalSR : Spatial Regression Models with Compositional Data (Version 1.0)
2025
CopernicusDEM : Copernicus Digital Elevation Models (Version 1.0.5)
2021
Counterfactual : Estimation and Inference Methods for Counterfactual Analysis (Version 1.2)
2016
CovTools : Statistical Tools for Covariance Analysis (Version 0.5.6)
2017
CptNonPar
Series : (Version )
0
CspStandSegmentation
Data : (Version )
0
DAISIE
Extinction : (Version )
0
DEBBI : Differential Evolution-Based Bayesian Inference (Version 0.1.0)
2022
DET : Representation of DET Curve with Confidence Intervals (Version 3.0.2)
2025
EpiModel : Mathematical Modeling of Infectious Disease Dynamics (Version 2.5.0)
2013
NumericEnsembles : Automatically Runs 18 Individual and 14 Ensembles of Models (Version 0.10.3)
2025
bhetGP : Bayesian Heteroskedastic Gaussian Processes (Version 1.0.1)
2025
bigDM
Data : (Version )
0
bigPLScox : Partial Least Squares for Cox Models with Big Matrices (Version 0.8.1)
2025
bigSurvSGD : Big Survival Analysis Using Stochastic Gradient Descent (Version 0.0.1)
2020
fabisearch : Change Point Detection in High-Dimensional Time Series Networks (Version 0.0.4.5)
2021
AATtools : Reliability and Scoring Routines for the Approach-Avoidance Task (Version 0.0.3)
2020
ADMM : Algorithms using Alternating Direction Method of Multipliers (Version 0.3.4)
2017
AEenrich : Adverse Event Enrichment Tests (Version 1.1.1)
2020
APIS
Parents : (Version )
0
AZIAD : Analyzing Zero-Inflated and Zero-Altered Data (Version 0.0.3)
2022
ApacheLogProcessor : Process the Apache Web Server Log Files (Version 0.2.3)
2015
Arothron : Geometric Morphometric Methods and Virtual Anthropology Tools (Version 2.0.5)
2018
BDWreg : Bayesian Inference for Discrete Weibull Regression (Version 1.3.0)
2016
BMIselect
Datasets : (Version )
0
BSL : Bayesian Synthetic Likelihood (Version 3.2.5)
2018
BayesBinMix
Distributions : (Version )
0
BayesBrainMap
Priors : (Version )
0
BayesDecon : Density Deconvolution Using Bayesian Semiparametric Methods (Version 0.1.4)
2026
BayesPIM : Bayesian Prevalence-Incidence Mixture Model (Version 1.0.0)
2025
BayesianDisaggregation : Bayesian Methods for Economic Data Disaggregation (Version 0.1.2)
2025
BayesianPlatformDesignTimeTrend : Simulate and Analyse Bayesian Platform Trial with Time Trend (Version 1.2.3)
2023
BlockMissingData
Selection : (Version )
0
BootstrapQTL : Bootstrap cis-QTL Method that Corrects for the Winner's Curse (Version 1.0.5)
2018
C443 : See a Forest for the Trees (Version 3.4.0)
2018
CARRoT
Rule : (Version )
0
CAST : 'caret' Applications for Spatial-Temporal Models (Version 1.0.3)
2018
CDatanet : Econometrics of Network Data (Version 2.2.2)
2021
CFC : Cause-Specific Framework for Competing-Risk Analysis (Version 1.2.1)
2015
CICI
Interventions : (Version )
0
CIMTx : Causal Inference for Multiple Treatments with a Binary Outcome (Version 1.2.0)
2020
CIpostSelect : Confidence Interval Post-Selection of Variable (Version 0.2.2)
2024
CMTFtoolbox : Create (Advanced) Coupled Matrix and Tensor Factorization Models (Version 1.0.1)
2025
CNSigs : Analysis of Copy Number Signatures (Version 0.1.0)
2026
COMMA : Correcting Misclassified Mediation Analysis (Version 1.1.1)
2024
CVglasso : Lasso Penalized Precision Matrix Estimation (Version 1.0)
2018
CalibratR : Mapping ML Scores to Calibrated Predictions (Version 0.1.2)
2018
DNMF : Discriminant Non-Negative Matrix Factorization (Version 1.4.2)
2015
DMtest : Differential Methylation Tests (DMtest) (Version 1.0.0)
2021
DTDA.cif : Doubly Truncated Data Analysis, Cumulative Incidence Functions (Version 1.0.2)
2019
DTDA : Doubly Truncated Data Analysis (Version 3.0.1)
2009
DiceKriging : Kriging Methods for Computer Experiments (Version 1.6.1)
2010
Dire : Linear Regressions with a Latent Outcome Variable (Version 2.2.0)
2021
Directional : A Collection of Functions for Directional Data Analysis (Version 7.3)
2015
Distance : Distance Sampling Detection Function and Abundance Estimation (Version 2.0.1)
2012
DynForest : Random Forest with Multivariate Longitudinal Predictors (Version 1.2.0)
2022
E2E
Modeling : (Version )
0
EGRET : Exploration and Graphics for RivEr Trends (Version 3.0.11)
2014
EGRETci : Exploration and Graphics for RivEr Trends Confidence Intervals (Version 2.0.5)
2015
EPX : Ensemble of Phalanxes (Version 1.0.4)
2020
EWSmethods : Forecasting Tipping Points at the Community Level (Version 1.3.1)
2023
EstimDiagnostics : Diagnostic Tools and Unit Tests for Statistical Estimators (Version 0.0.3)
2020
EdSurvey : Analysis of NCES Education Survey and Assessment Data (Version 4.0.7)
2017
Euclimatch : Euclidean Climatch Algorithm (Version 1.0.2)
2023
ExtrPatt : Spatial Dependencies and Indices for Extremes (Version 0.1-4)
2023
ExtremalDep : Extremal Dependence Models (Version 1.0.0)
2019
FAVAR : Bayesian Analysis of a FAVAR Model (Version 0.1.3)
2022
FLORAL : Fit Log-Ratio Lasso Regression for Compositional Data (Version 0.6.0)
2023
FMM : Rhythmic Patterns Modeling by FMM Models (Version 0.4.1)
2021
FairMclus : Clustering for Data with Sensitive Attribute (Version 2.2.1)
2021
FastStepGraph : A Fast Algorithm for Sparse Precision Matrix Estimation (Version 0.1.1)
2023
FixedPoint : Algorithms for Finding Fixed Point Vectors of Functions (Version 0.6.3)
2017
ForecastingEnsembles : Time Series Forecasting Using 23 Individual Models (Version 0.5.1)
2025
FuncNN : Functional Neural Networks (Version 1.0)
2020
FuzzyClass : Fuzzy and Non-Fuzzy Classifiers (Version 0.1.7)
2022
GA : Genetic Algorithms (Version 3.2.5)
2012
GAGBLUP
Prediction : (Version )
0
GALLO : Genomic Annotation in Livestock for Positional Candidate LOci (Version 1.5)
2020
GAparsimony : Searching Parsimony Models with Genetic Algorithms (Version 0.9.5)
2017
GB5mcPred : Gradient Boosting Algorithm for Predicting Methylation States (Version 0.1.0)
2023
GBOP2 : Generalized Bayesian Optimal Phase II Design (G-BOP2) (Version 0.1.4)
2025
GDINA : The Generalized DINA Model Framework (Version 2.9.12)
2016
GENLIB : Genealogical Data Analysis (Version 1.1.10)
2014
GGIR : Raw Accelerometer Data Analysis (Version 3.3-0)
2013
GGoutlieR : Identify Individuals with Unusual Geo-Genetic Patterns (Version 1.0.2)
2023
GPpenalty : Penalized Likelihood in Gaussian Processes (Version 1.0.1)
2025
GSEMA : Gene Set Enrichment Meta-Analysis (Version 0.99.4)
2024
GWEX
Temperature : (Version )
0
GWLelast : Geographically Weighted Logistic Elastic Net Regression (Version 1.2.2)
2015
GWRM : Generalized Waring Regression Model for Count Data (Version 2.1.0.4)
2010
GWpcor : Geographically Weighted Partial Correlation Coefficient (Version 0.1.8)
2020
GeDS : Geometrically Designed Spline Regression (Version 0.3.3)
2017
GenHMM1d
Models : (Version )
0
GenOU
Processes : (Version )
0
GenoTriplo : Genotyping Triploids (or Diploids) from Luminescence Data (Version 1.1.3)
2023
GeoThinneR : Efficient Spatial Thinning of Species Occurrences (Version 2.1.0)
2024
GeomArchetypal : Finds the Geometrical Archetypal Analysis of a Data Frame (Version 1.0.3)
2024
HDCI
Bootstrap : (Version )
0
HIMA : High-Dimensional Mediation Analysis (Version 2.3.3)
2017
HMMcopula
Goodness-of-Fit : (Version )
0
HOIFCar : Covariate Adjustment in RCT by Higher-Order Influence Functions (Version 1.1.0)
2025
HaploCatcher : A Predictive Haplotyping Package (Version 1.0.4)
2023
HextractoR : Integrated Tool for Hairping Extraction of RNA Sequences (Version 1.4)
2018
HiCociety : Inferring Chromatin Interaction Modules from 3C-Based Data (Version 0.1.38)
2025
IDSpatialStats : Estimate Global Clustering in Infectious Disease (Version 0.4.0)
2016
IDmining : Intrinsic Dimension for Data Mining (Version 1.0.7)
2016
IETD : Inter-Event Time Definition (Version 1.0.0)
2020
IceSat2R : ICESat-2 Altimeter Data using R (Version 1.0.7)
2022
InteractionPoweR
Regressions : (Version )
0
Interatrix : Compute Chi-Square Measures with Corrections (Version 1.1.5)
2015
InterpretMSSpectrum : Interpreting High Resolution Mass Spectra (Version 1.5.2)
2016
JOUSBoost : Implements Under/Oversampling for Probability Estimation (Version 2.1.0)
2016
KScorrect : Lilliefors-Corrected Kolmogorov-Smirnov Goodness-of-Fit Tests (Version 1.4.0)
2016
Kmedians : K-Medians (Version 2.2.0)
2022
LMMstar : Repeated Measurement Models for Discrete Times (Version 1.1.0)
2021
LOMAR : Localization Microscopy Data Analysis (Version 0.5.1)
2021
LSAMBA : Lasso-SAMBA Algorithm (Version 2024.1.1)
2025
LSEbootLS
Errors : (Version )
0
LeArEst : Border and Area Estimation of Data Measured with Additive Error (Version 1.0.0)
2017
LogisticEnsembles : Automatically Runs 24 Logistic Models (Individual and Ensembles) (Version 0.8.2)
2025
LorenzRegression : Lorenz and Penalized Lorenz Regressions (Version 2.3.0)
2023
MADMMplasso : Multi Variate Multi Response ADMM with Interaction Effects (Version 1.0.1)
2025
MAGMA.R : MAny-Group MAtching (Version 1.0.4)
2024
MAGNAMWAR : A Pipeline for Meta-Genome Wide Association (Version 2.0.4)
2017
MAZE : Mediation Analysis for Zero-Inflated Mediators (Version 0.0.2)
2023
MCPModBC : Improved Inference in Multiple Comparison Procedure – Modelling (Version 1.1)
2023
MCPtests : Multiples Comparisons Procedures (Version 1.0.1)
2020
MDDC
Pharmacovigilance : (Version )
0
MEGENA : Multiscale Clustering of Geometrical Network (Version 1.3.7)
2016
MFSIS : Model-Free Sure Independent Screening Procedures (Version 0.3.0)
2021
MKclass : Statistical Classification (Version 0.5)
2020
MKmisc : Miscellaneous Functions from M. Kohl (Version 1.9)
2008
ML.MSBD : Maximum Likelihood Inference on Multi-State Trees (Version 1.2.1)
2017
MNS : Mixed Neighbourhood Selection (Version 1.0)
2015
MPI : Computation of Multidimensional Poverty Index (MPI) (Version 0.1.0)
2022
MSCquartets : Analyzing Gene Tree Quartets under the Multi-Species Coalescent (Version 3.2)
2019
MSPRT : A Modified Sequential Probability Ratio Test (MSPRT) (Version 3.0)
2018
MSclassifR : Automated Classification of Mass Spectra (Version 0.5.0)
2022
MSinference : Multiscale Inference for Nonparametric Time Trend(s) (Version 0.2.1)
2023
MUVR2 : Multivariate Methods with Unbiased Variable Selection (Version 0.1.0)
2024
MachineShop : Machine Learning Models and Tools (Version 3.9.1)
2018
MapperAlgo : Topological Data Analysis: Mapper Algorithm (Version 1.0.8)
2024
MarZIC
Mediator : (Version )
0
MarketMatching : Market Matching and Causal Impact Inference (Version 1.2.1)
2018
Markovchart : Markov Chain-Based Cost-Optimal Control Charts (Version 2.1.5)
2020
Mediana : Clinical Trial Simulations (Version 1.0.8)
2015
MedianaDesigner : Power and Sample Size Calculations for Clinical Trials (Version 0.13)
2021
MetabolSSMF
Analysis : (Version )
0
MixRF
Data : (Version )
0
MixedIndTests : Tests of Randomness and Tests of Independence (Version 1.2.0)
2021
MoBPS : Modular Breeding Program Simulator (Version 1.13.1)
2020
Morpho
Morphometrics : (Version )
0
NAP : Non-Local Alternative Priors in Psychology (Version 1.1)
2021
NCA : Necessary Condition Analysis (Version 4.0.5)
2015
NCC
Controls : (Version )
0
NMF
(NMF) : (Version )
0
NNS : Nonlinear Nonparametric Statistics (Version 11.6.4)
2016
NPflow
Data : (Version )
0
NRejections : Metrics for Multiple Testing with Correlated Outcomes (Version 1.2.0)
2018
NeEDS4BigData : New Experimental Design Based Subsampling Methods for Big Data (Version 1.0.1)
2025
NetworkExtinction : Extinction Simulation in Ecological Networks (Version 1.0.3)
2018
NetworkDistance : Distance Measures for Networks (Version 0.3.6)
2017
ODRF : Oblique Decision Random Forest for Classification and Regression (Version 0.0.5)
2023
ORION : Ordinal Relations (Version 1.0.4)
2020
OmicKriging : Poly-Omic Prediction of Complex TRaits (Version 1.4.0)
2013
PINSPlus : Clustering Algorithm for Data Integration and Disease Subtyping (Version 2.0.9)
2018
PLMIX : Bayesian Analysis of Finite Mixture of Plackett-Luce Models (Version 2.2.0)
2016
PNAR : Poisson Network Autoregressive Models (Version 1.7)
2022
POUMM : The Phylogenetic Ornstein-Uhlenbeck Mixed Model (Version 2.1.8)
2017
PPforest : Projection Pursuit Classification Forest (Version 0.2.0)
2017
PTE : Personalized Treatment Evaluator (Version 1.7)
2014
PUGMM : Parsimonious Ultrametric Gaussian Mixture Models (Version 0.1.2)
2024
PUlasso : High-Dimensional Variable Selection with Presence-Only Data (Version 3.2.5)
2017
ParetoPosStable : Computing, Fitting and Validating the PPS Distribution (Version 1.1)
2014
PartialNetwork : Estimating Peer Effects Using Partial Network Data (Version 1.1.2)
2023
PhylogeneticEM : Automatic Shift Detection using a Phylogenetic EM (Version 1.8.1)
2017
Platypus : Single-Cell Immune Repertoire and Gene Expression Analysis (Version 3.6.0)
2021
ProcMod : Informative Procrustean Matrix Correlation (Version 1.0.8)
2019
QTL.gCIMapping.GUI
Interface : (Version )
0
QTL.gCIMapping : QTL Genome-Wide Composite Interval Mapping (Version 3.4)
2018
QuadratiK
Distances : (Version )
0
QualityMeasure : Methods for Analyzing Quality Measure Performance (Version 2.0.1)
2025
QurvE
Curves : (Version )
0
R2BEAT : Multistage Sampling Allocation and Sample Selection (Version 1.0.5)
2019
R2MLwiN : Running 'MLwiN' from Within R (Version 0.8-10)
2012
RABR : Simulations for Response Adaptive Block Randomization Design (Version 0.1.1)
2021
RAINBOWR : Genome-Wide Association Study with SNP-Set Methods (Version 0.1.38)
2019
RCNA : Robust Copy Number Alteration Detection (RCNA) (Version 1.0)
2024
RCTS : Clustering Time Series While Resisting Outliers (Version 0.2.4)
2022
REN : Regularization Ensemble for Robust Portfolio Optimization (Version 0.1.0)
2024
REPTILE : Regulatory DNA Element Prediction (Version 1.0)
2016
RGBM
Reconstruction : (Version )
0
RGMM : Robust Mixture Model (Version 2.1.0)
2022
RHRV : Heart Rate Variability Analysis of ECG Data (Version 5.0.0)
2008
RHybridFinder : Identification of Hybrid Peptides in Immunopeptidomic Analyses (Version 0.2.0)
2021
RISCA : Causal Inference and Prediction in Cohort-Based Analyses (Version 1.0.7)
2019
RKEEL : Using 'KEEL' in R Code (Version 1.3.4)
2016
RLumCarlo : Monte-Carlo Methods for Simulating Luminescence Phenomena (Version 0.1.10)
2020
RMTL : Regularized Multi-Task Learning (Version 0.9.9)
2019
RNAmf : Recursive Non-Additive Emulator for Multi-Fidelity Data (Version 1.1.2)
2023
ROptimus : A Parallel General-Purpose Adaptive Optimisation Engine (Version 3.0.0)
2023
RPPASPACE
Evaluation : (Version )
0
RRgeo : Species Distribution Modelling for Rare Species (Version 0.0.6)
2025
RRphylo : Phylogenetic Ridge Regression Methods for Comparative Studies (Version 3.0.2)
2018
RRreg : Correlation and Regression Analyses for Randomized Response Data (Version 0.7.6)
2014
RSC : Robust and Sparse Correlation Matrix (Version 2.0.5)
2020
RaJIVE : Robust Angle Based Joint and Individual Variation Explained (Version 1.0)
2021
RaSEn : Random Subspace Ensemble Classification and Variable Screening (Version 3.0.0)
2020
ReIns : Functions from "Reinsurance: Actuarial and Statistical Aspects" (Version 1.0.15)
2016
Rlgt : Bayesian Exponential Smoothing Models with Trend Modifications (Version 0.2-3)
2019
Rlof : R Parallel Implementation of Local Outlier Factor(LOF) (Version 1.1.3)
2011
Rmfrac : Simulation and Statistical Analysis of Multifractional Processes (Version 0.1.1)
2025
RobGARCHBoot : Robust Bootstrap Forecast Densities for GARCH Models (Version 1.2.0)
2019
RobRegression : Robust Multivariate Regression (Version 0.1.0)
2024
Robyn
Science : (Version )
0
RootsExtremaInflections : Finds Roots, Extrema and Inflection Points of a Curve (Version 1.2.5)
2014
Rrepest
Education : (Version )
0
SAMGEP : A Semi-Supervised Method for Prediction of Phenotype Event Times (Version 0.1.0-1)
2021
SAVER : Single-Cell RNA-Seq Gene Expression Recovery (Version 1.1.2)
2018
SAiVE
Publications : (Version )
0
SCOR : Spherically Constrained Optimization Routine (Version 1.1.2)
2019
SCORNET : Semi-Supervised Calibration of Risk with Noisy Event Times (Version 0.1.1)
2020
SEA : Segregation Analysis (Version 2.0.1)
2018
SFtools : Space Filling Based Tools for Data Mining (Version 0.1.0)
2017
SGP : Student Growth Percentiles & Percentile Growth Trajectories (Version 2.2-0.0)
2008
SIDES : Subgroup Identification Based on Differential Effect Search (Version 1.18)
2016
SIMMS : Subnetwork Integration for Multi-Modal Signatures (Version 1.3.2)
2013
SISIR : Select Intervals Suited for Functional Regression (Version 0.2.3)
2016
SLEMI : Statistical Learning Based Estimation of Mutual Information (Version 1.0.2)
2019
SSDM : Stacked Species Distribution Modelling (Version 0.2.11)
2016
SSN2 : Spatial Modeling on Stream Networks (Version 0.4.0)
2023
SSNbler : Assemble 'SSN' Objects (Version 1.1.1)
2024
SelectBoost.gamlss
Models : (Version )
0
SemiPar.depCens
Censoring : (Version )
0
SeqKat : Detection of Kataegis (Version 0.0.8)
2017
SharkDemography : Shark Demographic Analyses Using Leslie Matrix Models (Version 1.1.0)
2023
SimSurvey : Test Surveys by Simulating Spatially-Correlated Populations (Version 0.1.8)
2020
SpaTopic
Images : (Version )
0
SparseMDC : Implementation of SparseMDC Algorithm (Version 0.99.5)
2018
SpatialPosition : Spatial Position Models (Version 2.1.3)
2015
SpeTestNP : Non-Parametric Tests of Parametric Specifications (Version 1.1.0)
2022
SpiceFP : Sparse Method to Identify Joint Effects of Functional Predictors (Version 0.1.2)
2021
Sstack
Data : (Version )
0
StAMPP : Statistical Analysis of Mixed Ploidy Populations (Version 1.6.3)
2013
StochBlock : Stochastic Blockmodeling of One-Mode and Linked Networks (Version 0.1.5)
2023
SuRF.vs : Subsampling Ranking Forward Selection (SuRF) (Version 1.1.0.1)
2022
TCIU : Spacekime Analytics, Time Complexity and Inferential Uncertainty (Version 1.2.7)
2020
TDApplied : Machine Learning and Inference for Topological Data Analysis (Version 3.0.4)
2022
TGS : Rapid Reconstruction of Time-Varying Gene Regulatory Networks (Version 1.0.1)
2018
TRexSelector
Control : (Version )
0
TSP : Infrastructure for the Traveling Salesperson Problem (Version 1.2.6)
2006
TcGSA : Time-Course Gene Set Analysis (Version 0.12.13)
2014
TraMineRextras : TraMineR Extension (Version 0.6.8)
2012
TriadSim : Simulating Triad Genomewide Genotypes (Version 0.3.0)
2017
TropFishR : Tropical Fisheries Analysis (Version 1.6.6)
2016
VARcpDetectOnline
Models : (Version )
0
VIC5 : The Variable Infiltration Capacity (VIC) Hydrological Model (Version 0.2.6)
2021
VICatMix : Variational Mixture Models for Clustering Categorical Data (Version 1.0)
2024
VSURF : Variable Selection Using Random Forests (Version 1.2.1)
2013
VertexWiseR
Surface : (Version )
0
WGCNA : Weighted Correlation Network Analysis (Version 1.73)
2010
WRTDStidal : Weighted Regression for Water Quality Evaluation in Tidal Waters (Version 1.1.5)
2016
WebGestaltR : Gene Set Analysis Toolkit WebGestaltR (Version 0.4.6)
2017
WpProj : Linear p-Wasserstein Projections (Version 0.2.3)
2024
YEAB : Analyze Data from Analysis of Behavior Experiments (Version 1.0.6)
2025
ZIPFA : Zero Inflated Poisson Factor Analysis (Version 0.8.1)
2019
ZLAvian : Zipf's Law of Abbreviation in Animal Vocalisations (Version 0.2.0)
2023
abcrf : Approximate Bayesian Computation via Random Forests (Version 2.0)
2015
abn : Modelling Multivariate Data with Additive Bayesian Networks (Version 3.1.13)
2011
adabag : Applies Multiclass AdaBoost.M1, SAMME and Bagging (Version 5.1)
2006
adamethods : Archetypoid Algorithms and Anomaly Detection (Version 1.2.1)
2018
adapt4pv : Adaptive Approaches for Signal Detection in Pharmacovigilance (Version 0.2-3)
2020
adaptDiag : Bayesian Adaptive Designs for Diagnostic Trials (Version 0.1.0)
2021
adjustedCurves
Functions : (Version )
0
admix : Package Admix for Admixture (aka Contamination) Models (Version 2.5.2)
2021
ag5Tools : Toolbox for Downloading and Extracting Copernicus AgERA5 Data (Version 0.0.2)
2022
aifeducation : Artificial Intelligence for Education (Version 1.1.3)
2023
aihuman
Decision-Making : (Version )
0
aliases2entrez : Converts Human gene symbols to entrez IDs (Version 0.1.2)
2019
antaresEditObject : Edit an 'Antares' Simulation (Version 0.9.3)
2018
antaresRead
Simulation : (Version )
0
archeofrag.gui : Spatial Analysis in Archaeology from Refitting Fragments (GUI) (Version 1.1.4)
2025
archetypal : Finds the Archetypal Analysis of a Data Frame (Version 1.3.1)
2019
arf : Adversarial Random Forests (Version 0.2.4)
2022
ashapesampler : Generating Alpha Shapes (Version 1.0.0)
2024
astrochron : A Computational Tool for Astrochronology (Version 1.5)
2014
autoMrP : Improving MrP with Ensemble Learning (Version 1.0.6)
2021
auxvecLASSO
Diagnostics : (Version )
0
avotrex
Traits : (Version )
0
baclava
Augmentation : (Version )
0
baggingbwsel
Estimation : (Version )
0
basket : Basket Trial Analysis (Version 0.10.11)
2019
batchtools : Tools for Computation on Batch Systems (Version 0.9.18)
2016
bayesCureRateModel : Bayesian Cure Rate Modeling for Time-to-Event Data (Version 1.6)
2024
bayesboot : An Implementation of Rubin's (1981) Bayesian Bootstrap (Version 0.2.3)
2016
bayesreg : Bayesian Regression Models with Global-Local Shrinkage Priors (Version 1.3)
2016
bbw : Blocked Weighted Bootstrap (Version 0.3.1)
2018
bcf : Causal Inference using Bayesian Causal Forests (Version 2.0.2)
2018
bdc : Biodiversity Data Cleaning (Version 1.1.6)
2022
benchmarkme : Crowd Sourced System Benchmarks (Version 1.0.8)
2016
bestNormalize : Normalizing Transformation Functions (Version 1.9.2)
2017
bigparallelr : Easy Parallel Tools (Version 0.3.2)
2019
bingat : Binary Graph Analysis Tools (Version 1.3)
2014
biomod2 : Ensemble Platform for Species Distribution Modeling (Version 4.3-4-3)
2012
biopixR : Extracting Insights from Biological Images (Version 1.2.0)
2024
blockmodeling : Generalized and Classical Blockmodeling of Valued Networks (Version 1.1.8)
2008
bootPLS : Bootstrap Hyperparameter Selection for PLS Models and Extensions (Version 1.1.0)
2021
bootcluster : Bootstrapping Estimates of Clustering Stability (Version 0.4.3)
2017
brada : Bayesian Response-Adaptive Design Analysis (Version 1.0)
2023
brainGraph : Graph Theory Analysis of Brain MRI Data (Version 3.1.1)
2015
bst : Gradient Boosting (Version 0.3-24)
2011
bstrl : Bayesian Streaming Record Linkage (Version 1.0.2)
2022
castgen : Estimate Sample Size for Population Genomic Studies (Version 1.0.2)
2025
catlearn : Formal Psychological Models of Categorization and Learning (Version 1.1)
2016
cats : Cohort Platform Trial Simulation (Version 1.0.2)
2022
cauchypca
Distribution : (Version )
0
cauphy : Trait Evolution on Phylogenies Using the Cauchy Process (Version 1.0.3)
2023
ccar3 : Canonical Correlation Analysis via Reduced Rank Regression (Version 0.1.0)
2025
cemco : Fit 'CemCO' Algorithm (Version 0.2)
2020
cffdrs : Canadian Forest Fire Danger Rating System (Version 1.9.2)
2015
cgaim : Constrained Groupwise Additive Index Models (Version 1.0.3)
2022
changepointGA : Changepoint Detection via Modified Genetic Algorithm (Version 0.1.3)
2025
changepointTests : Change Point Tests for Joint Distributions and Copulas (Version 0.1.7)
2021
chicane : Capture Hi-C Analysis Engine (Version 0.1.8)
2018
cia : Learn and Apply Directed Acyclic Graphs for Causal Inference (Version 1.0.0)
2024
circularEV : Extreme Value Analysis for Circular Data (Version 0.1.1)
2021
clespr : Composite Likelihood Estimation for Spatial Data (Version 1.1.2)
2018
climodr : Climate Modeling with Point Data from Climate Stations (Version 1.0.0)
2025
clinDR
Modeling : (Version )
0
clustcurv : Determining Groups in Multiples Curves (Version 3.0.1)
2019
clustvarsel : Variable Selection for Gaussian Model-Based Clustering (Version 2.3.5)
2006
colocalized : Clusters of Colocalized Sequences (Version 0.2.0)
2019
conStruct
Structure : (Version )
0
conText : 'a la Carte' on Text (ConText) Embedding Regression (Version 3.0.0)
2021
confintROB
Estimators : (Version )
0
conleyreg : Estimations using Conley Standard Errors (Version 0.1.9)
2021
contsurvplot
Outcome : (Version )
0
copyseparator : Assembling Long Gene Copies from Short Read Data (Version 1.2.0)
2022
corr2D : Implementation of 2D Correlation Analysis in R (Version 1.0.3)
2016
cpfa : Classification with Parallel Factor Analysis (Version 1.2-5)
2022
cpi : Conditional Predictive Impact (Version 0.1.5)
2022
cpmBigData
Data : (Version )
0
cramR : Cram Method for Efficient Simultaneous Learning and Evaluation (Version 0.1.1)
2025
creditmodel : Toolkit for Credit Modeling, Analysis and Visualization (Version 1.3.1)
2019
cv : Cross-Validating Regression Models (Version 2.0.4)
2023
cytominer : Methods for Image-Based Cell Profiling (Version 0.2.2)
2017
dCovTS : Distance Covariance and Correlation for Time Series Analysis (Version 1.4)
2016
dMod : Dynamic Modeling and Parameter Estimation in ODE Models (Version 1.0.2)
2015
dartR.base : Analysing 'SNP' and 'Silicodart' Data - Basic Functions (Version 1.0.7)
2023
dartR.sexlinked : Analysing SNP Data to Identify Sex-Linked Markers (Version 1.0.5)
2024
dartR.sim : Computer Simulations of 'SNP' Data (Version 0.71)
2023
data.tree : General Purpose Hierarchical Data Structure (Version 1.2.0)
2015
datafsm : Estimating Finite State Machine Models from Data (Version 0.2.4)
2015
dataprep : Efficient and Flexible Data Preprocessing Tools (Version 0.1.5)
2021
dda : Direction Dependence Analysis (Version 0.1.1)
2025
ddsPLS : Data-Driven Sparse Partial Least Squares (Version 1.2.1)
2018
deepgp : Bayesian Deep Gaussian Processes using MCMC (Version 1.2.0)
2020
deltaccd : Quantify Rhythmic Gene Co-Expression Relative to a Reference (Version 1.0.2)
2022
dendroNetwork
Similarity : (Version )
0
depCensoring : Statistical Methods for Survival Data with Dependent Censoring (Version 0.1.8)
2024
detectR : Change Point Detection (Version 0.3.0)
2021
detectXOR : XOR Pattern Detection and Visualization (Version 0.1.0)
2025
detrendr : Detrend Images (Version 0.6.15)
2017
diagL1
Models : (Version )
0
dispositionEffect : Analysis of Disposition Effect on Financial Portfolios (Version 1.0.1)
2021
doRNG : Generic Reproducible Parallel Backend for 'foreach' Loops (Version 1.8.6.2)
2011
dream : Dynamic Relational Event Analysis and Modeling (Version 1.0.0)
2025
drimmR : Estimation, Simulation and Reliability of Drifting Markov Models (Version 1.0.1)
2021
drugdevelopR : Utility-Based Optimal Phase II/III Drug Development Planning (Version 1.0.2)
2024
drugDemand : Drug Demand Forecasting (Version 0.1.3)
2023
dynetNLAResistance : Resisting Neighbor Label Attack in a Dynamic Network (Version 0.1.0)
2016
e2tree : Explainable Ensemble Trees (Version 0.2.0)
2025
eNchange : Ensemble Methods for Multiple Change-Point Detection (Version 1.1)
2020
earlygating : Properties of Bayesian Early Gating Designs (Version 1.1)
2018
easy.glmnet : Functions to Simplify the Use of 'glmnet' for Machine Learning (Version 1.0)
2024
ecoCopula : Graphical Modelling and Ordination using Copulas (Version 1.0.6)
2020
econet : Estimation of Parameter-Dependent Network Centrality Measures (Version 1.0.0.1)
2018
ellipticalsymmetry : Elliptical Symmetry Tests (Version 0.1.2)
2020
enmSdmX : Species Distribution Modeling and Ecological Niche Modeling (Version 1.2.12)
2022
enpls : Ensemble Partial Least Squares Regression (Version 6.1.1)
2014
epizootic
Wildlife : (Version )
0
esaddle : Extended Empirical Saddlepoint Density Approximations (Version 0.0.7)
2016
esviz : Plotting Functions for Climate Science and Services (Version 0.0.1)
2026
evalITR : Evaluating Individualized Treatment Rules (Version 1.0.0)
2020
evapoRe : Evapotranspiration R Recipes (Version 1.0.1)
2023
evian : Evidential Analysis of Genetic Association Data (Version 2.1.0)
2018
evinf : Inference with Extreme Value Inflated Count Data (Version 0.8.10)
2023
evolqg : Evolutionary Quantitative Genetics (Version 0.3-6)
2015
ewoc : Escalation with Overdose Control (Version 0.3.0)
2017
extBatchMarking : Extended Batch Marking Models (Version 1.1.0)
2023
factorEx : Design and Analysis for Factorial Experiments (Version 1.1.0)
2025
factree : Factor-Augmented Clustering Tree (Version 0.1.0)
2025
fastLink : Fast Probabilistic Record Linkage with Missing Data (Version 0.6.1)
2017
fastnet : Large-Scale Social Network Analysis (Version 1.0.0)
2016
fdANOVA
Data : (Version )
0
fda.usc : Functional Data Analysis and Utilities for Statistical Computing (Version 2.2.0)
2011
fdaMocca : Model-Based Clustering for Functional Data with Covariates (Version 0.1-2)
2021
fdaSP : Sparse Functional Data Analysis Methods (Version 1.1.1)
2023
fdasrvf : Elastic Functional Data Analysis (Version 2.4.2)
2012
fect : Fixed Effects Counterfactual Estimators (Version 2.1.0)
2022
fiberLD : Fiber Length Determination (Version 0.1-8)
2019
finnts : Microsoft Finance Time Series Forecasting Framework (Version 0.6.0)
2022
fishboot
Populations : (Version )
0
fitPS : Fit Zeta Distributions to Forensic Data (Version 1.0.1)
2022
fitPoly : Genotype Calling for Bi-Allelic Marker Assays (Version 4.0.0)
2018
flintyR : Simple and Flexible Tests of Sample Exchangeability (Version 0.1.0)
2021
foreSIGHT : Systems Insights from Generation of Hydroclimatic Timeseries (Version 2.0.0)
2018
foreach : Provides Foreach Looping Construct (Version 1.5.2)
2009
forecastHybrid : Convenient Functions for Ensemble Time Series Forecasts (Version 5.1.21)
2016
fuzzyforest : Fuzzy Forests (Version 1.0.8)
2016
gambin : Fit the Gambin Model to Species Abundance Distributions (Version 2.5.0)
2013
gamlss.foreach : Parallel Computations for Distributional Regression (Version 1.1-6)
2021
gamreg : Robust and Sparse Regression via Gamma-Divergence (Version 0.3)
2016
gapclosing : Estimate Gaps Under an Intervention (Version 1.0.2)
2021
gbts : Hyperparameter Search for Gradient Boosted Trees (Version 1.2.0)
2016
gdm : Generalized Dissimilarity Modeling (Version 1.6.0-7)
2015
gdpc : Generalized Dynamic Principal Components (Version 1.1.4)
2016
geeVerse : A Comprehensive Analysis of High Dimensional Longitudinal Data (Version 0.3.1)
2024
genlogis : Generalized Logistic Distribution (Version 1.0.2)
2017
geoTS
Images : (Version )
0
gestate : Generalised Survival Trial Assessment Tool Environment (Version 1.6.0)
2019
gfoRmulaICE : Parametric Iterative Conditional Expectation G-Formula (Version 1.1.1)
2024
ggroups : Pedigree and Genetic Groups (Version 2.1.2)
2019
glmm
Approximation : (Version )
0
glmnetUtils : Utilities for 'Glmnet' (Version 1.1.9)
2017
glmtlp : Generalized Linear Models with Truncated Lasso Penalty (Version 2.0.2)
2018
glmtrans : Transfer Learning under Regularized Generalized Linear Models (Version 2.1.0)
2021
gomp : The gamma-OMP Feature Selection Algorithm (Version 1.0)
2025
graDiEnt : Stochastic Quasi-Gradient Differential Evolution Optimization (Version 1.0.1)
2022
graphicalEvidence : Graphical Evidence (Version 1.1)
2024
greybox : Toolbox for Model Building and Forecasting (Version 2.0.7)
2018
groupedHyperframe : Grouped Hyper Data Frame (Version 0.3.3)
2025
growthcleanr : Data Cleaner for Anthropometric Measurements (Version 2.2.0)
2022
gsbm : Estimate Parameters in the Generalized SBM (Version 0.2.2)
2020
gsrs : A Group-Specific Recommendation System (Version 0.1.1)
2021
handwriter : Handwriting Analysis in R (Version 3.2.4)
2021
hdbinseg
Segmentation : (Version )
0
hdcuremodels : High-Dimensional Cure Models (Version 0.0.6)
2024
hdnom : Benchmarking and Visualization Toolkit for Penalized Cox Models (Version 6.1.0)
2015
heatwaveR : Detect Heatwaves and Cold-Spells (Version 0.5.5)
2018
highd2means : High-Dimensional Tests for Two Population Mean Vectors (Version 1.0)
2024
hlt : Higher-Order Item Response Theory (Version 1.3.1)
2022
hmsr : Multipopulation Evolutionary Strategy HMS (Version 1.0.1)
2023
hsrecombi : Estimation of Recombination Rate and Maternal LD in Half-Sibs (Version 1.0.1)
2020
hyperbolicDEA : Hyperbolic DEA Estimation (Version 1.0.2)
2024
iIneq
Indices : (Version )
0
iZID : Identify Zero-Inflated Distributions (Version 0.0.1)
2019
ihclust : Iterative Hierarchical Clustering (IHC) (Version 0.1.0)
2022
imageseg : Deep Learning Models for Image Segmentation (Version 0.5.0)
2021
imanr : Identify the Racial Complex of Native Corns from Mexico (Version 2.0.0)
2024
immunaut : Machine Learning Immunogenicity and Vaccine Response Analysis (Version 1.0.2)
2024
inctools : Incidence Estimation Tools (Version 1.0.15)
2016
influential : Identification and Classification of the Most Influential Nodes (Version 2.2.9)
2020
intamap : Procedures for Automated Interpolation (Version 1.5-11)
2009
intccr
Censoring : (Version )
0
interflex : Multiplicative Interaction Models Diagnostics and Visualization (Version 1.2.8)
2017
intkrige : A Numerical Implementation of Interval-Valued Kriging (Version 1.0.2)
2019
intmed : Mediation Analysis using Interventional Effects (Version 0.1.2)
2020
isocat : Isotope Origin Clustering and Assignment Tools (Version 0.3.0)
2019
isoWater : Discovery, Retrieval, and Analysis of Water Isotope Data (Version 1.2.1)
2021
ivDiag
Designs : (Version )
0
jSDM : Joint Species Distribution Models (Version 0.2.7)
2019
jackstrap : Correcting Nonparametric Frontier Measurements for Outliers (Version 0.1.0)
2020
kcpRS : Kernel Change Point Detection on the Running Statistics (Version 1.1.1)
2019
kdevine : Multivariate Kernel Density Estimation with Vine Copulas (Version 0.4.6)
2017
kdry : K's "Don't Repeat Yourself"-Collection (Version 0.0.3)
2023
kergp : Gaussian Process Laboratory (Version 0.5.8)
2015
kernhaz : Kernel Estimation of Hazard Function in Survival Analysis (Version 0.1.0)
2018
kfa : K-Fold Cross Validation for Factor Analysis (Version 0.2.2)
2021
kfino : Kalman Filter for Impulse Noised Outliers (Version 1.0.0)
2022
kko : Kernel Knockoffs Selection for Nonparametric Additive Models (Version 1.0.1)
2022
kmBlock : k-Means Like Blockmodeling of One-Mode and Linked Networks (Version 0.1.4)
2023
knnp
(Parallel) : (Version )
0
knockoff : The Knockoff Filter for Controlled Variable Selection (Version 0.3.6)
2014
l1rotation : Identify Loading Vectors under Sparsity in Factor Models (Version 1.0.1)
2025
landsepi : Landscape Epidemiology and Evolution (Version 1.5.3)
2018
latrend : A Framework for Clustering Longitudinal Data (Version 1.6.2)
2020
lavaSearch2 : Tools for Model Specification in the Latent Variable Framework (Version 2.0.3)
2018
lboxcox : Implementation of Logistic Box-Cox Regression (Version 1.2)
2022
lcmm : Extended Mixed Models Using Latent Classes and Latent Processes (Version 2.2.2)
2010
ldamatch : Selection of Statistically Similar Research Groups (Version 1.0.3)
2015
ldmppr
Processes : (Version )
0
ldsep : Linkage Disequilibrium Shrinkage Estimation for Polyploids (Version 2.1.6)
2020
leastcostpath : Modelling Pathways and Movement Potential Within a Landscape (Version 2.0.13)
2020
legion : Forecasting Using Multivariate Models (Version 0.2.1)
2021
limorhyde2
Data : (Version )
0
lmeresampler : Bootstrap Methods for Nested Linear Mixed-Effects Models (Version 0.2.4)
2016
lmmpar : Parallel Linear Mixed Model (Version 0.1.0)
2017
logiBin : Binning Variables to Use in Logistic Regression (Version 0.3)
2017
lpirfs : Local Projections Impulse Response Functions (Version 0.2.5)
2018
lqmix : Linear Quantile Mixture Models (Version 1.2)
2023
mSTEM : Multiple Testing of Local Extrema for Detection of Change Points (Version 1.0-1)
2019
mSimCC : Micro Simulation Model for Cervical Cancer Prevention (Version 0.0.3)
2019
mable : Maximum Approximate Bernstein/Beta Likelihood Estimation (Version 4.1.1)
2018
mapi : Mapping Averaged Pairwise Information (Version 1.1.4)
2018
maxEff : Additional Predictor with Maximum Effect Size (Version 0.2.0)
2025
mcgf : Markov Chain Gaussian Fields Simulation and Parameter Estimation (Version 1.1.1)
2023
mclustAddons : Addons for the 'mclust' Package (Version 0.10)
2021
mcmcderive : Derive MCMC Parameters (Version 0.1.2)
2019
metadeconfoundR
Data : (Version )
0
metaplus : Robust Meta-Analysis and Meta-Regression (Version 1.0-6)
2014
meteo : RFSI & STRK Interpolation for Meteo and Environmental Variables (Version 2.0-3)
2015
mevr : Fitting the Metastatistical Extreme Value Distribution MEVD (Version 1.1.1)
2024
miceRanger : Multiple Imputation by Chained Equations with Random Forests (Version 1.5.0)
2020
mimi : Main Effects and Interactions in Mixed and Incomplete Data (Version 0.2.0)
2019
missForest : Nonparametric Missing Value Imputation using Random Forest (Version 1.6.1)
2011
missMDA : Handling Missing Values with Multivariate Data Analysis (Version 1.20)
2010
misspi : Missing Value Imputation in Parallel (Version 0.1.0)
2023
mistral : Methods in Structural Reliability (Version 2.2.4)
2013
mlrv : Long-Run Variance Estimation in Time Series Regression (Version 0.1.2)
2023
mmb : Arbitrary Dependency Mixed Multivariate Bayesian Models (Version 0.13.3)
2020
modACDC
Co-Expression : (Version )
0
modeltime.ensemble : Ensemble Algorithms for Time Series Forecasting with Modeltime (Version 1.1.0)
2020
modeltime : The Tidymodels Extension for Time Series Modeling (Version 1.3.3)
2020
monoClust : Perform Monothetic Clustering with Extensions to Circular Data (Version 1.2.1)
2020
mpath : Regularized Linear Models (Version 0.4-2.26)
2014
mplot : Graphical Model Stability and Variable Selection Procedures (Version 1.0.6)
2015
mrMLM : Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for GWAS (Version 5.0.1)
2016
msaenet : Multi-Step Adaptive Estimation Methods for Sparse Regressions (Version 3.1.2)
2016
msm : Multi-State Markov and Hidden Markov Models in Continuous Time (Version 1.8.2)
2002
mstherm : Analyze MS/MS Protein Melting Data (Version 0.4.7)
2017
multiApply : Apply Functions to Multiple Multidimensional Arrays or Vectors (Version 2.1.5)
2017
multiFANOVA : Multiple Contrast Tests for Functional Data (Version 0.1.0)
2023
multinomialLogitMix
Covariates : (Version )
0
mutSignatures : Decipher Mutational Signatures from Somatic Mutational Catalogs (Version 2.1.1)
2017
mvhtests : Multivariate Hypothesis Tests (Version 1.1)
2023
nestedcv : Nested Cross-Validation with 'glmnet' and 'caret' (Version 0.8.0)
2022
netcom : NETwork COMparison Inference (Version 2.1.7)
2017
noisyr : Noise Quantification in High Throughput Sequencing Output (Version 1.0.0)
2021
nonprobsvy : Inference Based on Non-Probability Samples (Version 0.2.3)
2024
npcurePK : Mixture Cure Model Estimation with Cure Status Partially Known (Version 1.0-2)
2023
oRaklE : Multi-Horizon Electricity Demand Forecasting in High Resolution (Version 1.0.2)
2025
omicsTools : Omics Data Process Toolbox (Version 1.1.7)
2023
oosse : Out-of-Sample R² with Standard Error Estimation (Version 1.0.11)
2023
opGMMassessment : Optimized Automated Gaussian Mixture Assessment (Version 0.4)
2021
opdisDownsampling
Data : (Version )
0
optiSel : Optimum Contribution Selection and Population Genetics (Version 2.0.9)
2016
otrimle : Robust Model-Based Clustering (Version 2.0)
2016
packMBPLSDA : Multi-Block Partial Least Squares Discriminant Analysis (Version 0.9.0)
2019
paleoTS : Analyze Paleontological Time-Series (Version 0.6.2)
2006
parafac4microbiome
Data : (Version )
0
paramsim : Parameterized Simulation (Version 0.1.0)
2023
pathfindR : Enrichment Analysis Utilizing Active Subnetworks (Version 2.7.0)
2018
pbo : Probability of Backtest Overfitting (Version 1.3.5)
2014
pchc : Bayesian Network Learning with the PCHC and Related Algorithms (Version 1.3)
2020
pdp : Partial Dependence Plots (Version 0.8.2)
2016
pemultinom : L1-Penalized Multinomial Regression with Statistical Inference (Version 0.1.1)
2023
pencopulaCond : Estimating Non-Simplified Vine Copulas Using Penalized Splines (Version 0.2)
2017
perms : Fast Permutation Computation (Version 1.14)
2023
permutes : Permutation Tests for Time Series Data (Version 2.8)
2018
perspectev : Permutation of Species During Turnover Events (Version 1.1)
2015
phenomap : Projecting Satellite-Derived Phenology in Space (Version 2.0.1)
2017
phenopix : Process Digital Images of a Vegetation Cover (Version 2.4.5)
2017
phers : Calculate Phenotype Risk Scores (Version 1.0.2)
2022
phylosignalDB : Explore Phylogenetic Signals Using Distance-Based Methods (Version 0.2.2)
2025
phytools : Phylogenetic Tools for Comparative Biology (and Other Things) (Version 2.5-2)
2011
pksensi
Modeling : (Version )
0
plasso : Cross-Validated Post-Lasso (Version 0.1.3)
2023
plausibounds : Plausible Bounds for Treatment Path Estimates (Version 1.0.1)
2026
plyr : Tools for Splitting, Applying and Combining Data (Version 1.8.9)
2008
pmparser
PubMed/MEDLINE : (Version )
0
poems : Pattern-Oriented Ensemble Modeling System (Version 1.4.0)
2021
polymapR : Linkage Analysis in Outcrossing Polyploids (Version 1.1.7)
2017
polypharmacy : Calculate Several Polypharmacy Indicators (Version 1.0.0)
2021
polyqtlR : QTL Analysis in Autopolyploid Bi-Parental F1 Populations (Version 0.1.1)
2020
potential : Implementation of the Potential Model (Version 0.2.0)
2020
ppgm
Distributions : (Version )
0
pre : Prediction Rule Ensembles (Version 1.0.8)
2016
predhy.GUI
Interface : (Version )
0
predhy : Genomic Prediction of Hybrid Performance (Version 2.1.2)
2019
productivity : Indices of Productivity Using Data Envelopment Analysis (DEA) (Version 1.1.0)
2016
projpred : Projection Predictive Feature Selection (Version 2.10.0)
2018
protr
Sequences : (Version )
0
psborrow : Bayesian Dynamic Borrowing with Propensity Score (Version 0.2.4)
2021
psgp : Projected Spatial Gaussian Process Methods (Version 0.3-25)
2009
pubchem.bio : Biologically Informed Metabolomic Libraries from 'PubChem' (Version 1.0.5)
2025
qcluster : Clustering via Quadratic Scoring (Version 1.2.1)
2024
qfa : Quantile-Frequency Analysis (QFA) of Time Series (Version 4.2)
2013
qgam : Smooth Additive Quantile Regression Models (Version 2.0.0)
2017
quickNmix : Asymptotic N-Mixture Model Fitting (Version 1.1.1)
2021
rENA : Epistemic Network Analysis (Version 0.3.0)
2017
ramsvm : Reinforced Angle-Based Multicategory Support Vector Machines (Version 2.4)
2016
randomGLM : Random General Linear Model Prediction (Version 1.10-1)
2013
randomLCA : Random Effects Latent Class Analysis (Version 1.1-4)
2008
rassta : Raster-Based Spatial Stratification Algorithms (Version 1.0.6)
2021
rasterdiv : Diversity Indices for Numerical Matrices (Version 0.3.8)
2020
rayshader : Create Maps and Visualize Data in 2D and 3D (Version 0.37.3)
2018
rcaiman : CAnopy IMage ANalysis (Version 2.0.1)
2022
rcontroll : Individual-Based Forest Growth Simulator 'TROLL' (Version 0.1.2)
2023
recmap : Compute the Rectangular Statistical Cartogram (Version 1.0.20)
2016
reddPrec : Reconstruction of Daily Data - Precipitation (Version 3.0.2)
2016
redist : Simulation Methods for Legislative Redistricting (Version 4.3.1)
2015
redistmetrics : Redistricting Metrics (Version 1.0.11)
2021
refreg : Conditional Multivariate Reference Regions (Version 0.1.1)
2021
regRSM : Random Subspace Method (RSM) for Linear Regression (Version 0.5)
2014
regda : Regularised Discriminant Analysis (Version 1.0)
2023
rem : Relational Event Models (REM) (Version 1.3.1)
2016
remotePARTS : Spatiotemporal Autoregression Analyses for Large Data Sets (Version 1.0.4)
2023
representr : Create Representative Records After Entity Resolution (Version 0.1.5)
2020
resemble : Memory-Based Learning in Spectral Chemometrics (Version 2.2.5)
2014
resilience : Predictors of Resilience to a Stressor in a Single-Arm Study (Version 2025.1.1)
2023
rgenius : Get 'Genius' API Lyrics (Version 0.1.0)
2020
riskscores : Optimized Integer Risk Score Models (Version 1.2.3)
2023
riverconn : Fragmentation and Connectivity Indices for Riverscapes (Version 0.3.31)
2022
rmfanova : Repeated Measures Functional Analysis of Variance (Version 0.1.0)
2023
rnaCrosslinkOO : Analysis of RNA Crosslinking Data (Version 0.1.4)
2024
robmixglm : Robust Generalized Linear Models (GLM) using Mixtures (Version 1.2-5)
2018
robust2sls : Outlier Robust Two-Stage Least Squares Inference and Testing (Version 0.2.3)
2021
robustBLME : Robust Bayesian Linear Mixed-Effects Models using ABC (Version 0.1.3)
2017
robustbase : Basic Robust Statistics (Version 0.99-6)
2006
robustrao : An Extended Rao-Stirling Diversity Index to Handle Missing Data (Version 1.0-5)
2016
rplec : Placental Epigenetic Clock to Estimate Aging by DNA Methylation (Version 0.1.3)
2025
rsides : SIDES-Based Subgroup Search Algorithms (Version 0.1)
2024
rsppfp : R's Shortest Path Problem with Forbidden Subpaths (Version 1.0.4)
2018
runexp : Softball Run Expectancy using Markov Chains and Simulation (Version 0.2.1)
2021
sRDA : Sparse Redundancy Analysis (Version 1.0.0)
2017
sae.projection : Small Area Estimation Using Model-Assisted Projection Method (Version 0.1.5)
2024
santaR : Short Asynchronous Time-Series Analysis (Version 1.2.4)
2018
scDHA : Single-Cell Decomposition using Hierarchical Autoencoder (Version 1.2.3)
2021
scPOEM : Single-Cell Meta-Path Based Omic Embedding (Version 0.1.3)
2025
scanstatistics : Space-Time Anomaly Detection using Scan Statistics (Version 1.1.2)
2016
scenfire : Post-Processing Algorithm for Integrating Wildfire Simulations (Version 0.1.0)
2026
scoper : Spectral Clustering-Based Method for Identifying B Cell Clones (Version 1.4.0)
2018
scorecard : Credit Risk Scorecard (Version 0.4.5)
2017
segMGarch
Processes : (Version )
0
segmentr : Segment Data With Maximum Likelihood (Version 0.2.0)
2019
semsfa : Semiparametric Estimation of Stochastic Frontier Models (Version 1.2)
2015
sensitivity
Measures : (Version )
0
sephora : Statistical Estimation of Phenological Parameters (Version 0.1.31)
2024
seriation : Infrastructure for Ordering Objects Using Seriation (Version 1.5.8)
2007
sgsR : Structurally Guided Sampling (Version 1.5.0)
2022
shazam : Immunoglobulin Somatic Hypermutation Analysis (Version 1.3.1)
2016
simPop : Simulation of Complex Synthetic Data Information (Version 2.1.3)
2014
simdata : Generate Simulated Datasets (Version 0.4.1)
2024
simsalapar : Tools for Simulation Studies in Parallel (Version 1.0-13)
2013
singleRcapture : Single-Source Capture-Recapture Models (Version 1.0.0)
2023
sivs : Stable Iterative Variable Selection (Version 0.2.11)
2020
skewMLRM : Estimation for Scale-Shape Mixtures of Skew-Normal Distributions (Version 1.7)
2021
skpr
Designs : (Version )
0
smacof : Multidimensional Scaling (Version 2.1-7)
2008
smam : Statistical Modeling of Animal Movements (Version 0.7.2)
2013
smooth : Forecasting Using State Space Models (Version 4.3.1)
2016
sms : Spatial Microsimulation (Version 2.3.1)
2012
snpAIMeR : Assess the Diagnostic Power of Genomic Marker Combinations (Version 2.1.1)
2023
soundgen : Sound Synthesis and Acoustic Analysis (Version 2.8.0)
2017
spAbundance
Abundance : (Version )
0
spBPS
Learning : (Version )
0
spOccupancy
Models : (Version )
0
spant : MR Spectroscopy Analysis Tools (Version 3.8.0)
2017
spareg : Sparse Projected Averaged Regression (Version 1.1.1)
2025
sparr : Spatial and Spatiotemporal Relative Risk (Version 2.3-16)
2010
spatPomp : Inference for Spatiotemporal Partially Observed Markov Processes (Version 1.1.0)
2021
spatialRF : Easy Spatial Modeling with Random Forest (Version 1.1.5)
2021
spect : Survival Prediction Ensemble Classification Tool (Version 1.0)
2025
spectr : Calculate the Periodogram of a Time-Course (Version 1.0.1)
2022
splitSelect : Best Split Selection Modeling for Low-Dimensional Data (Version 1.0.3)
2020
spmoran
Eigenvectors : (Version )
0
ss3sim
Synthesis : (Version )
0
stR : Seasonal Trend Decomposition Using Regression (Version 0.7.1)
2016
sta : Seasonal Trend Analysis for Time Series Imagery in R (Version 0.1.7)
2021
staRdom : PARAFAC Analysis of EEMs from DOM (Version 1.1.30)
2018
statGraph : Statistical Methods for Graphs (Version 1.0.6)
2017
stfit : Spatio-Temporal Functional Imputation Tool (Version 0.99.9)
2020
sureLDA : A Novel Multi-Disease Automated Phenotyping Method for the EHR (Version 0.1.0-1)
2020
survidm : Inference and Prediction in an Illness-Death Model (Version 1.3.2)
2017
surveyvoi : Survey Value of Information (Version 1.1.1)
2021
swag : Sparse Wrapper Algorithm (Version 0.1.0)
2020
tall : Text Analysis for All (Version 0.5.1)
2025
tclust : Robust Trimmed Clustering (Version 2.1-2)
2010
templateICAr
Priors : (Version )
0
text2map : R Tools for Text Matrices, Embeddings, and Networks (Version 0.2.0)
2021
thisutils : Collection of Utility Functions for Data Analysis and Computing (Version 0.3.6)
2025
tidysdm : Species Distribution Models with Tidymodels (Version 1.0.4)
2023
tigger : Infers Novel Immunoglobulin Alleles from Sequencing Data (Version 1.1.2)
2016
tip : Bayesian Clustering Using the Table Invitation Prior (TIP) (Version 0.1.0)
2022
toscca : Thresholded Ordered Sparse CCA (Version 0.1.0)
2025
track2KBA : Identifying Important Areas from Animal Tracking Data (Version 1.1.3)
2021
transfR : Transfer of Hydrograph from Gauged to Ungauged Catchments (Version 1.1.4)
2021
treesliceR
Time : (Version )
0
truh : Two-Sample Nonparametric Testing Under Heterogeneity (Version 1.0.0)
2021
tsensembler : Dynamic Ensembles for Time Series Forecasting (Version 0.1.0)
2017
twc : Terrestrial Water Cycle (Version 0.0.2)
2024
twosigma : DE Analysis for Single-Cell RNA-Sequencing Data (Version 1.0.2)
2021
ubiquity : PKPD, PBPK, and Systems Pharmacology Modeling Tools (Version 2.1.0)
2019
unifiedml : Unified Interface for Machine Learning Models (Version 0.2.0)
2025
unsystation : Stationarity Test Based on Unsystematic Sub-Sampling (Version 0.2.1)
2016
varclust : Variables Clustering (Version 0.9.4)
2019
varitas : Variant Calling in Targeted Analysis Sequencing Data (Version 0.0.2)
2020
vip : Variable Importance Plots (Version 0.4.5)
2018
viscomplexr : Phase Portraits of Functions in the Complex Number Plane (Version 1.1.2)
2020
voiceR : Voice Analytics for Social Scientists (Version 0.1.0)
2023
weightQuant : Weights for Incomplete Longitudinal Data and Quantile Regression (Version 1.0.1)
2018
wxgenR : A Stochastic Weather Generator with Seasonality (Version 1.4.4)
2023
xrnet : Hierarchical Regularized Regression (Version 1.0.1)
2020
yaConsensus : Consensus Clustering of Omic Data (Version 1.1)
2021
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RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN).
Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.
