irlba: Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices

Canonical link: https://rscholar.com/pkg/irlba

Jim Baglama • Lothar Reichel • B. W. Lewis • View description and downloads View dependencies GitHub project

2011 Published

2.3.5.1 Version

0 Citations

3 Authors

Referenced by ⇅	Year
fastCorrDiff: Fast Differential Correlation Matrix Screening (Version 0.5)	2021
rescue: Bootstrap Imputation for Single-Cell RNA-Seq Data (Version 1.0.3)	2020
spathial: Evolutionary Analysis (Version 0.1.2)	2020
MOSS: Multi-Omic Integration via Sparse Singular Value Decomposition (Version 0.2.2)	2021
CAESAR.Suite: CAESAR: a Cross-Technology and Cross-Resolution Framework for Spatial Omics Annotation (Version 0.1.0)	2024
CMGFM: Covariate-Augumented Generalized Factor Model (Version 1.1)	2024
COAP: High-Dimensional Covariate-Augmented Overdispersed Poisson Factor Model (Version 1.2)	2024
Canek: Batch Correction of Single Cell Transcriptome Data (Version 0.2.5)	2022
ChemoSpec2D: Exploratory Chemometrics for 2D Spectroscopy (Version 0.5.0)	2018
ChemoSpecUtils: Functions Supporting Packages ChemoSpec and ChemoSpec2D (Version 1.0.4)	2018
ChemoSpec: Exploratory Chemometrics for Spectroscopy (Version 6.1.10)	2011
ClustAssess: Tools for Assessing Clustering (Version 0.3.0)	2021
DDRTree: Learning Principal Graphs with DDRTree (Version 0.1.5)	2016
DR.SC: Joint Dimension Reduction and Spatial Clustering (Version 3.4)	2021
DrImpute: Imputing Dropout Events in Single-Cell RNA-Sequencing Data (Version 1.0)	2017
ERP: Significance Analysis of Event-Related Potentials Data (Version 2.2)	2014
GFM: Generalized Factor Model (Version 1.2.1)	2022
GeneNMF: Non-Negative Matrix Factorization for Single-Cell Omics (Version 0.6.0)	2024
GoodFitSBM: Monte Carlo Goodness-of-Fit Tests for Stochastic Block Models (Version 0.0.1)	2024
HCD: Hierarchical Community Detection by Recursive Partitioning (Version 1.0)	2019
HMC: High Dimensional Mean Comparison with Projection and Cross-Fitting (Version 1.1)	2024
KnockoffScreen: Whole-Genome Sequencing Data Analysis via Knockoff Statistics (Version 0.3.0)	2020
LSX: Semi-Supervised Algorithm for Document Scaling (Version 1.4.0)	2020
MFPCA: Multivariate Functional Principal Component Analysis for Data Observed on Different Dimensional Domains (Version 1.3-10)	2016
MMGFM: Multi-Study Multi-Modality Generalized Factor Model (Version 1.1.0)	2024
MOCHA: Modeling for Single-Cell Open Chromatin Analysis (Version 1.1.0)	2022
MultiCOAP: High-Dimensional Covariate-Augmented Overdispersed Multi-Study Poisson Factor Model (Version 1.1)	2024
OmicKriging: Poly-Omic Prediction of Complex TRaits (Version 1.4.0)	2013
PINSPlus: Clustering Algorithm for Data Integration and Disease Subtyping (Version 2.0.7)	2018
ProFAST: Probabilistic Factor Analysis for Spatially-Aware Dimension Reduction (Version 1.4)	2023
RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data (Version 0.3.8)	2018
Rssa: A Collection of Methods for Singular Spectrum Analysis (Version 1.1)	2011
Rtsne: T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation (Version 0.17)	2014
SCORPION: Single Cell Oriented Reconstruction of PANDA Individual Optimized Networks (Version 1.0.2)	2022
SPUTNIK: Spatially Automatic Denoising for Imaging Mass Spectrometry Toolkit (Version 1.4.2)	2018
Seurat: Tools for Single Cell Genomics (Version 5.1.0)	2017
Signac: Analysis of Single-Cell Chromatin Data (Version 1.14.0)	2020
SpaCOAP: High-Dimensional Spatial Covariate-Augmented Overdispersed Poisson Factor Model (Version 1.2)	2024
SpatialDDLS: Deconvolution of Spatial Transcriptomics Data Based on Neural Networks (Version 1.0.3)	2023
SuperCell: Simplification of scRNA-Seq Data by Merging Together Similar Cells (Version 1.0.1)	2024
absorber: Variable Selection in Nonparametric Models using B-Splines (Version 1.0)	2024
bdsvd: Block Structure Detection Using Singular Vectors (Version 0.2.0)	2024
broom: Convert Statistical Objects into Tidy Tibbles (Version 1.0.7)	2014
conos: Clustering on Network of Samples (Version 1.5.2)	2021
denoiseR: Regularized Low Rank Matrix Estimation (Version 1.0.2)	2016
dyndimred: Dimensionality Reduction Methods in a Common Format (Version 1.0.4)	2019
embed: Extra Recipes for Encoding Predictors (Version 1.1.4)	2018
epca: Exploratory Principal Component Analysis (Version 1.1.0)	2020
fastTopics: Fast Algorithms for Fitting Topic Models and Non-Negative Matrix Factorizations to Count Data (Version 0.6-192)	2022
flashier: Empirical Bayes Matrix Factorization (Version 1.0.7)	2023
fuser: Fused Lasso for High-Dimensional Regression over Groups (Version 1.0.1)	2017
gdim: Estimate Graph Dimension using Cross-Validated Eigenvalues (Version 0.1.0)	2023
guidedPLS: Supervised Dimensional Reduction by Guided Partial Least Squares (Version 1.0.0)	2023
hierBipartite: Bipartite Graph-Based Hierarchical Clustering (Version 0.0.2)	2021
iGraphMatch: Tools for Graph Matching (Version 2.0.5)	2021
iSFun: Integrative Dimension Reduction Analysis for Multi-Source Data (Version 1.1.0)	2021
jackstraw: Statistical Inference for Unsupervised Learning (Version 1.3.17)	2014
jrSiCKLSNMF: Multimodal Single-Cell Omics Dimensionality Reduction (Version 1.2.1)	2023
lmds: Landmark Multi-Dimensional Scaling (Version 0.1.0)	2019
lolR: Linear Optimal Low-Rank Projection (Version 2.1)	2018
metR: Tools for Easier Analysis of Meteorological Fields (Version 0.16.0)	2018
mixedCCA: Sparse Canonical Correlation Analysis for High-Dimensional Mixed Data (Version 1.6.2)	2020
mixsqp: Sequential Quadratic Programming for Fast Maximum-Likelihood Estimation of Mixture Proportions (Version 0.3-54)	2018
multivarious: Extensible Data Structures for Multivariate Analysis (Version 0.2.0)	2024
pagoda2: Single Cell Analysis and Differential Expression (Version 1.0.12)	2021
penAFT: Fit the Regularized Gehan Estimator with Elastic Net and Sparse Group Lasso Penalties (Version 0.3.0)	2022
randnet: Random Network Model Estimation, Selection and Parameter Tuning (Version 0.7)	2017
recommenderlab: Lab for Developing and Testing Recommender Algorithms (Version 1.0.6)	2010
s4vd: Biclustering via Sparse Singular Value Decomposition Incorporating Stability Selection (Version 1.1-1)	2011
scISR: Single-Cell Imputation using Subspace Regression (Version 0.1.1)	2022
sccore: Core Utilities for Single-Cell RNA-Seq (Version 1.0.5)	2020
sctransform: Variance Stabilizing Transformations for Single Cell UMI Data (Version 0.4.1)	2018
seqgendiff: RNA-Seq Generation/Modification for Simulation (Version 1.2.4)	2019
spant: MR Spectroscopy Analysis Tools (Version 2.23.0)	2017
steadyICA: ICA and Tests of Independence via Multivariate Distance Covariance (Version 1.0)	2015
symphony: Efficient and Precise Single-Cell Reference Atlas Mapping (Version 0.1.1)	2021
uwot: The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality Reduction (Version 0.2.2)	2019
widyr: Widen, Process, then Re-Tidy Data (Version 0.1.5)	2017

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