irlba: Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices

Canonical link: https://rscholar.com/pkg/irlba

Jim Baglama • Lothar Reichel • B. W. Lewis • View description and downloads View dependencies GitHub project

2011 Published

0 Citations

3 Authors

13 Revisions

2.3.5.1 Version

GPL-3 License

Referenced by ⇅	Year
fastCorrDiff: Fast Differential Correlation Matrix Screening (Version 0.5)	2021
rescue: Bootstrap Imputation for Single-Cell RNA-Seq Data (Version 1.0.3)	2020
spathial: Evolutionary Analysis (Version 0.1.2)	2020
MOSS: Multi-Omic Integration via Sparse Singular Value Decomposition (Version 0.2.2)	2021
CAESAR.Suite: CAESAR: a Cross-Technology and Cross-Resolution Framework for Spatial Omics Annotation (Version 0.3.0)	2024
COAP: High-Dimensional Covariate-Augmented Overdispersed Poisson Factor Model (Version 1.3)	2024
HMC: High-Dimensional Mean Comparison with Projection and Cross-Fitting (Version 1.2)	2024
MFPCA: Multivariate Functional Principal Component Analysis for Data Observed on Different Dimensional Domains (Version 1.3-11)	2016
MOCHA: Modeling for Single-Cell Open Chromatin Analysis (Version 1.1.0)	2022
MultiCOAP: High-Dimensional Covariate-Augmented Overdispersed Multi-Study Poisson Factor Model (Version 1.1)	2024
ProFAST: Probabilistic Factor Analysis for Spatially-Aware Dimension Reduction (Version 1.7)	2023
RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data (Version 0.3.9)	2018
Rtsne: T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation (Version 0.17)	2014
SCORPION: Single Cell Oriented Reconstruction of PANDA Individual Optimized Networks (Version 1.2.0)	2022
SPUTNIK: Spatially Automatic Denoising for Imaging Mass Spectrometry Toolkit (Version 1.4.3)	2018
SpaCOAP: High-Dimensional Spatial Covariate-Augmented Overdispersed Poisson Factor Model (Version 1.3)	2024
SpatialDDLS: Deconvolution of Spatial Transcriptomics Data Based on Neural Networks (Version 1.0.3)	2023
SuperCell: Simplification of scRNA-Seq Data by Merging Together Similar Cells (Version 1.1)	2024
denoiseR: Regularized Low Rank Matrix Estimation (Version 1.0.2)	2016
fastTopics: Fast Algorithms for Fitting Topic Models and Non-Negative Matrix Factorizations to Count Data (Version 0.7-37)	2022
mixedCCA: Sparse Canonical Correlation Analysis for High-Dimensional Mixed Data (Version 1.6.3)	2020
mixsqp: Sequential Quadratic Programming for Fast Maximum-Likelihood Estimation of Mixture Proportions (Version 0.3-54)	2018
penAFT: Fit the Semiparametric Accelerated Failure Time Model with Elastic Net and Sparse Group Lasso Penalties (Version 0.3.2)	2022
s4vd: Biclustering via Sparse Singular Value Decomposition Incorporating Stability Selection (Version 1.1-1)	2011
steadyICA: ICA and Tests of Independence via Multivariate Distance Covariance (Version 1.0.1)	2015
uwot: The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality Reduction (Version 0.2.4)	2019
SpatialDDLS Networks: (Version )	0
ChemoSpec2D: Exploratory Chemometrics for 2D Spectroscopy (Version 0.5.1)	2018
ChemoSpec: Exploratory Chemometrics for Spectroscopy (Version 6.3.1)	2011
ChemoSpecUtils: Functions Supporting Packages ChemoSpec and ChemoSpec2D (Version 1.0.5)	2018
CoxMK Analysis: (Version )	0
DDRTree: Learning Principal Graphs with DDRTree (Version 0.1.5)	2016
CMGFM: Covariate-Augumented Generalized Factor Model (Version 1.1)	2024
Canek: Batch Correction of Single Cell Transcriptome Data (Version 0.2.5)	2022
DR.SC: Joint Dimension Reduction and Spatial Clustering (Version 3.7)	2021
DrImpute: Imputing Dropout Events in Single-Cell RNA-Sequencing Data (Version 1.0)	2017
ERP: Significance Analysis of Event-Related Potentials Data (Version 2.2)	2014
GFM: Generalized Factor Model (Version 1.2.2)	2022
GeneNMF: Non-Negative Matrix Factorization for Single-Cell Omics (Version 0.9.2)	2024
GoodFitSBM: Monte Carlo Goodness-of-Fit Tests for Stochastic Block Models (Version 0.0.1)	2024
HCD: Hierarchical Community Detection by Recursive Partitioning (Version 1.0)	2019
HMC Cross-Fitting: (Version )	0
KnockoffScreen: Whole-Genome Sequencing Data Analysis via Knockoff Statistics (Version 0.3.0)	2020
LBDiscover: Literature-Based Discovery Tools for Biomedical Research (Version 0.1.0)	2025
LSX: Semi-Supervised Algorithm for Document Scaling (Version 1.5.1)	2020
MMGFM: Multi-Study Multi-Modality Generalized Factor Model (Version 1.2.1)	2024
MultiRFM: High-Dimensional Multi-Study Robust Factor Model (Version 1.1.0)	2025
OmicKriging: Poly-Omic Prediction of Complex TRaits (Version 1.4.0)	2013
PINSPlus: Clustering Algorithm for Data Integration and Disease Subtyping (Version 2.0.9)	2018
PRECAST Datasets: (Version )	0
ProFAST Reduction: (Version )	0
RMFM: Robust Matrix Factor Model (Version 1.1.0)	2024
Rssa: A Collection of Methods for Singular Spectrum Analysis (Version 1.1)	2011
Rtsne Implementation: (Version )	0
Seurat: Tools for Single Cell Genomics (Version 5.4.0)	2017
Signac: Analysis of Single-Cell Chromatin Data (Version 1.16.0)	2020
SparseICA: Sparse Independent Component Analysis (Version 0.1.4)	2025
SuperCell Cells: (Version )	0
absorber: Variable Selection in Nonparametric Models using B-Splines (Version 1.0)	2024
bdsvd: Block Structure Detection Using Singular Vectors (Version 0.2.1)	2024
broom: Convert Statistical Objects into Tidy Tibbles (Version 1.0.11)	2014
conos: Clustering on Network of Samples (Version 1.5.2)	2021
decorrelate: Decorrelation Projection Scalable to High Dimensional Data (Version 0.1.6.4)	2025
dyndimred: Dimensionality Reduction Methods in a Common Format (Version 1.0.4)	2019
embed: Extra Recipes for Encoding Predictors (Version 1.2.1)	2018
epca: Exploratory Principal Component Analysis (Version 1.1.0)	2020
factree: Factor-Augmented Clustering Tree (Version 0.1.0)	2025
fastRG: Sample Generalized Random Dot Product Graphs in Linear Time (Version 0.4.0)	2021
flashier: Empirical Bayes Matrix Factorization (Version 1.0.7)	2023
fuser: Fused Lasso for High-Dimensional Regression over Groups (Version 1.0.1)	2017
gdim: Estimate Graph Dimension using Cross-Validated Eigenvalues (Version 0.1.1)	2023
guidedPLS: Supervised Dimensional Reduction by Guided Partial Least Squares (Version 1.1.0)	2023
hierBipartite: Bipartite Graph-Based Hierarchical Clustering (Version 0.0.2)	2021
iGraphMatch: Tools for Graph Matching (Version 2.0.5)	2021
iSFun: Integrative Dimension Reduction Analysis for Multi-Source Data (Version 1.1.0)	2021
inferCSN: Inferring Cell-Specific Gene Regulatory Network (Version 1.2.0)	2023
jackstraw: Statistical Inference for Unsupervised Learning (Version 1.3.17)	2014
jrSiCKLSNMF: Multimodal Single-Cell Omics Dimensionality Reduction (Version 1.2.3)	2023
lmds: Landmark Multi-Dimensional Scaling (Version 0.1.0)	2019
lolR: Linear Optimal Low-Rank Projection (Version 2.1)	2018
metR: Tools for Easier Analysis of Meteorological Fields (Version 0.18.3)	2018
mixedCCA Data: (Version )	0
multivarious: Extensible Data Structures for Multivariate Analysis (Version 0.3.1)	2024
pECV: Entrywise Splitting Cross-Validation for Factor Models (Version 1.0.1)	2025
pagoda2: Single Cell Analysis and Differential Expression (Version 1.0.13)	2021
randnet: Random Network Model Estimation, Selection and Parameter Tuning (Version 1.0)	2017
recommenderlab: Lab for Developing and Testing Recommender Algorithms (Version 1.0.7)	2010
scISR: Single-Cell Imputation using Subspace Regression (Version 0.1.1)	2022
sccore: Core Utilities for Single-Cell RNA-Seq (Version 1.0.6)	2020
sctransform: Variance Stabilizing Transformations for Single Cell UMI Data (Version 0.4.3)	2018
seqgendiff: RNA-Seq Generation/Modification for Simulation (Version 1.2.4)	2019
spant: MR Spectroscopy Analysis Tools (Version 3.8.0)	2017
sparseGFM: Sparse Generalized Factor Models with Multiple Penalty Functions (Version 0.1.0)	2025
steadyICA Covariance: (Version )	0
symphony: Efficient and Precise Single-Cell Reference Atlas Mapping (Version 0.1.2)	2021
widyr: Widen, Process, then Re-Tidy Data (Version 0.1.5)	2017
wordvector: Word and Document Vector Models (Version 0.6.0)	2024

RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN). Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.