Referenced by ⇅
Year
BacArena : Modeling Framework for Cellular Communities in their
Environments (Version 1.8.2)
2015
BayesSPsurv : Bayesian Spatial Split Population Survival Model (Version 0.1.4)
2020
binaryTimeSeries : Analyzes a Binary Variable During a Time Series (Version 1.0.2)
2022
bioassays : Summarising Multi Well Plate Cellular Assay (Version 1.0.1)
2020
bmotif : Motif Analyses of Bipartite Networks (Version 2.0.2)
2018
CropDetectR : Crop Row Detector (Version 0.0.1)
2019
drfit : Dose-Response Data Evaluation (Version 0.7.2)
2004
dtwSat : Time-Weighted Dynamic Time Warping for Satellite Image Time
Series Analysis (Version 1.0.0)
2015
dynfeature : Feature Importance for Dynamic Processes (Version 1.0.1)
2021
dynplot : Visualising Single-Cell Trajectories (Version 1.1.2)
2021
FlexDotPlot : Flexible Dot Plot (Version 0.2.2)
2022
foster : Forest Structure Extrapolation with R (Version 0.1.1)
2020
genius : Easily Access Song Lyrics from Genius.com (Version 2.2.3)
2019
ggcoverage : Visualize Genome Coverage with Various Annotations (Version 0.7.1)
2022
HierDpart : Partitioning Hierarchical Diversity and Differentiation Across
Metrics and Scales, from Genes to Ecosystems (Version 1.5.0)
2018
HRM : High-Dimensional Repeated Measures (Version 1.2.1)
2015
intensity.analysis : Intensity of Change for Comparing Categorical Maps from
Sequential Intervals (Version 0.1.6)
2019
IntLIM : Integration of Omics Data Using Linear Modeling (Version 2.0.2)
2022
iriR : Global Innovation Through Company Level Data (Version 0.2.2)
2020
linea : Linear Regression Interface (Version 0.1.1)
2022
mdapack : Medical Data Analysis Pack (Version 0.0.2)
2020
microsamplingDesign : Finding Optimal Microsampling Designs for Non-Compartmental
Pharmacokinetic Analysis (Version 1.0.8)
2018
microSTASIS : Microbiota STability ASsessment via Iterative cluStering (Version 0.1.0)
2021
MoMPCA : Inference and Clustering for Mixture of Multinomial Principal
Component Analysis (Version 1.0.1)
2020
muHVT : Constructing Hierarchical Voronoi Tessellations and Overlay
Heatmap for Data Analysis (Version 3.0.0)
2018
nCov2019 : Exploring "COVID"-19 Statistics (Version 0.4.6)
2021
PALMO : Identify Intra and Inter-Donor Variations in Bulk or Single Cell
Longitudinal Dataset (Version 0.1.2)
2022
propr : Calculating Proportionality Between Vectors of Compositional
Data (Version 4.2.6)
2016
pspline.inference : Estimation of Characteristics of Seasonal and Sporadic
Infectious Disease Outbreaks Using Generalized Additive
Modeling with Penalized Basis Splines (Version 1.0.4)
2020
PWFSLSmoke : Utilities for Working with Air Quality Monitoring Data (Version 1.2.117)
2017
rabhit : Inference Tool for Antibody Haplotype (Version 0.2.5)
2019
Rlda : Bayesian LDA for Mixed-Membership Clustering Analysis (Version 0.2.6)
2017
rplos : Interface to the Search API for "PLoS" Journals (Version 1.0.0)
2011
rsbp : Part Information from the Registry of Standard Biological Parts (Version 0.1.0)
2020
SACOBRA : Self-Adjusting COBRA (Version 1.2)
2015
shadow : Geometric Shadow Calculations (Version 0.7.1)
2016
snht : Standard Normal Homogeneity Test (Version 1.0.5)
2014
spiR : Wrapper for the Social Progress Index Data (Version 0.2.1)
2020
STMedianPolish : Spatio-Temporal Median Polish (Version 0.2)
2015
TippingPoint : Enhanced Tipping Point Displays the Results of Sensitivity
Analysis for Missing Data (Version 1.2.0)
2016
traitdataform : Formatting and Harmonizing Ecological Trait-Data (Version 0.6.8)
2018
treecm : Centre of Mass Assessment and Consolidation of Trees (Version 1.2.2)
2011
validateRS : One-Sided Multivariate Testing Procedures for Rating Systems (Version 1.0.0)
2015
vanddraabe : Identification and Statistical Analysis of Conserved Waters Near
Proteins (Version 1.1.1)
2017
yaps : Track Estimation using YAPS (Yet Another Positioning Solver) (Version 1.2.5)
2021
zonator : Utilities for Zonation Spatial Conservation Prioritization
Software (Version 0.6.0)
2017
SourceSet : A Graphical Model Approach to Identify Primary Genes in
Perturbed Biological Pathways (Version 0.1.5)
2018
GNGTools : Tools for Go/No-Go Decision-Making Framework (Version 1.0.0)
2022
gsdensity : Density-Based Gene Set Specificity Evaluation (Version 0.1.2)
2023
lpjmlkit : Toolkit for Basic LPJmL Handling (Version 1.0.11)
2023
eiCompare : Compares Different Ecological Inference Methods (Version 3.0.4)
2016
comradesOO : Analysis of COMRADES (Cross-Linking Matched RNA and Deep Sequencing) Data (Version 0.1.1)
2023
deconstructSigs : Identifies Signatures Present in a Tumor Sample (Version 1.8.0)
2016
rsleep : Analysis of Sleep Data (Version 1.0.12)
2019
mmpf : Monte-Carlo Methods for Prediction Functions (Version 0.0.5)
2016
valse : Variable Selection with Mixture of Models (Version 0.1-0)
2021
packDAMipd : Decision Analysis Modelling Package with Parameters Estimation Ability from Individual Patient Level Data (Version 1.1.0)
2020
HS : Homogenous Segmentation for Spatial Lines Data (Version 1.1)
2019
IDSA : An Interactive Detector for Spatial Associations (Version 2.1)
2021
digitalDLSorteR : Deconvolution of Bulk RNA-Seq Data Based on Deep Learning (Version 1.1.0)
2021
GaMaBioMD : Diversity Analysis for Sequence Data (Version 0.2.0)
2024
MetaIntegrator : Meta-Analysis of Gene Expression Data (Version 2.1.3)
2016
flowr : Streamlining Design and Deployment of Complex Workflows (Version 0.9.11)
2015
diffudist : Diffusion Distance for Complex Networks (Version 1.0.1)
2021
aPEAR : Advanced Pathway Enrichment Analysis Representation (Version 1.0.0)
2023
dartR : Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis (Version 2.9.9.5)
2017
SlaPMEG : Pathway Testing for Longitudinal Omics (Version 1.0.2)
2020
PPtreeregViz : Projection Pursuit Regression Tree Visualization (Version 2.0.5)
2022
SFSI : Sparse Family and Selection Index (Version 1.4.1)
2021
sparsevar : Sparse VAR (Vector Autoregression) / VECM (Vector Error Correction Model) Estimation (Version 1.0.0)
2016
Statsomat : Shiny Apps for Automated Data Analysis and Automated Interpretation (Version 1.1.0)
2021
countfitteR : Comprehensive Automatized Evaluation of Distribution Models for Count Data (Version 1.5)
2019
AFheritability : The Attributable Fraction (AF) Described as a Function of Disease Heritability, Prevalence and Intervention Specific Factors (Version 0.1.0)
2019
ARPobservation : Tools for Simulating Direct Behavioral Observation Recording Procedures Based on Alternating Renewal Processes (Version 1.2.2)
2014
AurieLSHGaussian : Creates a Neighbourhood Using Locality Sensitive Hashing for Gaussian Projections (Version 0.2.0)
2017
BayesCTDesign : Two Arm Bayesian Clinical Trial Design with and Without Historical Control Data (Version 0.6.1)
2018
BayesianFactorZoo : Bayesian Solutions for the Factor Zoo: We Just Ran Two Quadrillion Models (Version 0.0.0.3)
2023
CACIMAR : Cross-Species Analysis of Cell Identities, Markers and Regulations (Version 1.0.0)
2022
CANSIM2R : Directly Extracts Complete CANSIM Data Tables (Version 1.14.1)
2015
CAinterprTools : Graphical Aid in Correspondence Analysis Interpretation and Significance Testings (Version 1.1.0)
2018
CMapViz : Representation Tool For Output Of Connectivity Map (CMap) Analysis (Version 0.1.0)
2019
CNVScope : A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization (Version 3.7.2)
2018
CSTools : Assessing Skill of Climate Forecasts on Seasonal-to-Decadal Timescales (Version 5.3.0)
2019
Cleanet : Automated Doublet Detection and Classification for Cytometry Data (Version 1.0.0)
2024
ClussCluster : Simultaneous Detection of Clusters and Cluster-Specific Genes in High-Throughput Transcriptome Data (Version 0.1.0)
2019
CompositeReliability : Determine the Composite Reliability of a Naturalistic, Unbalanced Dataset (Version 1.0.3)
2023
CytOpT : Optimal Transport for Gating Transfer in Cytometry Data with Domain Adaptation (Version 0.9.8)
2022
DImodelsMulti : Fit Multivariate Diversity-Interactions Models with Repeated Measures (Version 1.2.1)
2024
DirectEffects : Estimating Controlled Direct Effects for Explaining Causal Findings (Version 0.3)
2018
DiscreteDLM : Bayesian Distributed Lag Model Fitting for Binary and Count Response Data (Version 1.0.0)
2025
EEM : Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data (Version 1.1.1)
2015
EMJMCMC : Evolutionary Mode Jumping Markov Chain Monte Carlo Expert Toolbox (Version 1.5.0)
2024
ETRep : Analysis of Elliptical Tubes Under the Relative Curvature Condition (Version 1.2.1)
2024
FinCal : Time Value of Money, Time Series Analysis and Computational Finance (Version 0.6.3)
2013
ForecastTB : Test Bench for the Comparison of Forecast Methods (Version 1.0.1)
2020
GREENeR : Geospatial Regression Equation for European Nutrient Losses (GREEN) (Version 1.0.0)
2022
GeneSelectR : 'GeneSelectR' - Comprehensive Feature Selection Workflow for Bulk RNAseq Datasets (Version 1.0.1)
2023
GetDFPData : Reading Annual Financial Reports from Bovespa's DFP, FRE and FCA System (Version 1.6)
2017
HVT : Constructing Hierarchical Voronoi Tessellations and Overlay Heatmaps for Data Analysis (Version 25.2.8)
2023
HaDeX : Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data (Version 1.2.3)
2019
HetSeq : Identifying Modulators of Cellular Responses Leveraging Intercellular Heterogeneity (Version 0.1.0)
2025
Holomics : A User-Friendly R 'shiny' Application for Multi-Omics Data Integration and Analysis (Version 1.2.1)
2023
ImHD : Artificial Intelligence Based Machine Learning Algorithms for Height Diameter Relationships of Conifer Trees (Version 0.1.0)
2023
Information : Data Exploration with Information Theory (Weight-of-Evidence and Information Value) (Version 0.0.9)
2015
InteRD : The Integrated and Robust Deconvolution (Version 0.1.1)
2022
LambertW : Probabilistic Models to Analyze and Gaussianize Heavy-Tailed, Skewed Data (Version 0.6.9-2)
2009
LatentBMA : Bayesian Model Averaging for Univariate Link Latent Gaussian Models (Version 0.1.2)
2024
LipidomicsR : Elegant Tools for Processing and Visualization of Lipidomics Data (Version 0.3.6)
2024
LongDat : A Tool for 'Covariate'-Sensitive Longitudinal Analysis on 'omics' Data (Version 1.1.3)
2022
MARVEL : Revealing Splicing Dynamics at Single-Cell Resolution (Version 1.4.0)
2021
MLVSBM : A Stochastic Block Model for Multilevel Networks (Version 0.2.4)
2021
MPTmultiverse : Multiverse Analysis of Multinomial Processing Tree Models (Version 0.4-3)
2018
MantaID : A Machine-Learning Based Tool to Automate the Identification of Biological Database IDs (Version 1.0.4)
2022
MultIS : Reconstruction of Clones from Integration Site Readouts and Visualization (Version 0.6.2)
2021
NMADiagT : Network Meta-Analysis of Multiple Diagnostic Tests (Version 0.1.2)
2020
NMF : Algorithms and Framework for Nonnegative Matrix Factorization (NMF) (Version 0.28)
2009
NPflow : Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry Data (Version 0.13.6)
2016
NetworkComparisonTest : Statistical Comparison of Two Networks Based on Several Invariance Measures (Version 2.2.2)
2016
NitrogenUptake2016 : Data and Source Code From: Nitrogen Uptake and Allocation Estimates for Spartina Alterniflora and Distichlis Spicata (Version 0.2.3)
2018
OptCirClust : Circular, Periodic, or Framed Data Clustering: Fast, Optimal, and Reproducible (Version 0.0.4)
2020
PCADSC : Tools for Principal Component Analysis-Based Data Structure Comparisons (Version 0.8.0)
2017
PDQutils : PDQ Functions via Gram Charlier, Edgeworth, and Cornish Fisher Approximations (Version 0.1.6)
2015
ParamHelpers : Helpers for Parameters in Black-Box Optimization, Tuning and Machine Learning (Version 1.14.2)
2012
Perc : Using Percolation and Conductance to Find Information Flow Certainty in a Direct Network (Version 0.1.6)
2015
PhenotypeSimulator : Flexible Phenotype Simulation from Different Genetic and Noise Models (Version 0.3.4)
2017
PopGenReport : A Simple Framework to Analyse Population and Landscape Genetic Data (Version 3.1.3)
2012
ProtE : Processing Proteomics Data, Statistical Analysis and Visualization (Version 1.0.3)
2025
RDML : Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format Files (Version 1.1)
2015
RSSL : Implementations of Semi-Supervised Learning Approaches for Classification (Version 0.9.8)
2016
RTIGER : HMM-Based Model for Genotyping and Cross-Over Identification (Version 2.1.0)
2021
ReporterScore : Generalized Reporter Score-Based Enrichment Analysis for Omics Data (Version 0.1.9)
2024
Rirt : Data Analysis and Parameter Estimation Using Item Response Theory (Version 0.0.2)
2019
Rwtss : Client for Web Time-Series Service (Version 0.9.2)
2021
SCORPIUS : Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data (Version 1.0.10)
2017
SCdeconR : Deconvolution of Bulk RNA-Seq Data using Single-Cell RNA-Seq Data as Reference (Version 1.0.0)
2024
SUMMER : Small-Area-Estimation Unit/Area Models and Methods for Estimation in R (Version 2.0.0)
2017
ShinyWizard : An Interactive Wizard to Design, Build, and Deploy R Packages Demo Presentation (Version 1.1.3.11)
2024
SmCCNet : Sparse Multiple Canonical Correlation Network Analysis Tool (Version 2.0.3)
2019
SpatialDDLS : Deconvolution of Spatial Transcriptomics Data Based on Neural Networks (Version 1.0.3)
2023
TCGAretriever : Retrieve Genomic and Clinical Data from CBioPortal Including TCGA Data (Version 1.10.1)
2016
TopDom : An Efficient and Deterministic Method for Identifying Topological Domains in Genomes (Version 0.10.1)
2021
TopKSignal : A Convex Optimization Tool for Signal Reconstruction from Multiple Ranked Lists (Version 1.0)
2024
TripleR : Social Relation Model (SRM) Analyses for Single or Multiple Groups (Version 1.5.5)
2009
UPG : Efficient Bayesian Algorithms for Binary and Categorical Data Regression Models (Version 0.3.5)
2021
ZetaSuite : Analyze High-Dimensional High-Throughput Dataset and Quality Control Single-Cell RNA-Seq (Version 1.0.2)
2022
aLFQ : Estimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteomics Data (Version 1.3.6)
2013
ammistability : Additive Main Effects and Multiplicative Interaction Model Stability Parameters (Version 0.1.4)
2018
archeoViz : Visualisation, Exploration, and Web Communication of Archaeological Spatial Data (Version 1.4.1)
2023
asremlPlus : Augments 'ASReml-R' in Fitting Mixed Models and Packages Generally in Exploring Prediction Differences (Version 4.4.55)
2015
assignPOP : Population Assignment using Genetic, Non-Genetic or Integrated Data in a Machine Learning Framework (Version 1.3.1)
2016
autoGO : Auto-GO: Reproducible, Robust and High Quality Ontology Enrichment Visualizations (Version 1.0.3)
2023
bayefdr : Bayesian Estimation and Optimisation of Expected False Discovery Rate (Version 0.2.1)
2020
bayesvl : Visually Learning the Graphical Structure of Bayesian Networks and Performing MCMC with 'Stan' (Version 1.0.0)
2019
bikm1 : Co-Clustering Adjusted Rand Index and Bikm1 Procedure for Contingency and Binary Data-Sets (Version 1.1.0)
2019
birdscanR : Migration Traffic Rate Calculation Package for 'Birdscan MR1' Radars (Version 0.3.0)
2023
blrm : Dose Escalation Design in Phase I Oncology Trial Using Bayesian Logistic Regression Modeling (Version 1.0-2)
2019
bridgedist : An Implementation of the Bridge Distribution with Logit-Link as in Wang and Louis (2003) (Version 0.1.3)
2016
cassandRa : Finds Missing Links and Metric Confidence Intervals in Ecological Bipartite Networks (Version 0.2.0)
2019
chillR : Statistical Methods for Phenology Analysis in Temperate Fruit Trees (Version 0.77)
2013
chooseGCM : Selecting General Circulation Models for Species Distribution Modeling (Version 1.3)
2024
communication : Feature Extraction and Model Estimation for Audio of Human Speech (Version 0.1)
2021
compositeReliabilityInNestedDesigns : Optimizing the Composite Reliability in Multivariate Nested Designs (Version 1.0.4)
2024
contsurvplot : Visualize the Effect of a Continuous Variable on a Time-to-Event Outcome (Version 0.2.2)
2022
cooccur : Probabilistic Species Co-Occurrence Analysis in R (Version 1.3)
2014
csa : A Cross-Scale Analysis Tool for Model-Observation Visualization and Integration (Version 0.7.1)
2020
dartR.popgen : Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis (Version 1.0.0)
2023
datplot : Preparation of Object Dating Ranges for Density Plots (Aoristic Analysis) (Version 1.1.1)
2021
demic : Dynamic Estimator of Microbial Communities (Version 2.0.0)
2024
dendroNetwork : Create Networks of Dendrochronological Series using Pairwise Similarity (Version 0.5.5)
2024
dendroTools : Linear and Nonlinear Methods for Analyzing Daily and Monthly Dendroclimatological Data (Version 1.2.15)
2017
detectRUNS : Detect Runs of Homozygosity and Runs of Heterozygosity in Diploid Genomes (Version 0.9.6)
2018
dgpsi : Interface to 'dgpsi' for Deep and Linked Gaussian Process Emulations (Version 2.6.0)
2022
diffEnrich : Given a List of Gene Symbols, Performs Differential Enrichment Analysis (Version 0.1.2)
2019
diverse : Diversity Measures for Complex Systems (Version 0.1.5)
2015
dtwclust : Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance (Version 6.0.0)
2015
duet : Analysing Non-Verbal Communication in Dyadic Interactions from Video Data (Version 0.1.1)
2025
edina : Bayesian Estimation of an Exploratory Deterministic Input, Noisy and Gate Model (Version 0.1.2)
2020
effectR : Predicts Oomycete Effectors (Version 1.0.2)
2018
eirm : Explanatory Item Response Modeling for Dichotomous and Polytomous Items (Version 0.5)
2020
exvatools : Value Added in Exports and Other Input-Output Table Analysis Tools (Version 1.0.0)
2022
fergm : Estimation and Fit Assessment of Frailty Exponential Random Graph Models (Version 1.1.4)
2017
figuRes2 : Support for a Variety of Figure Production Tasks (Version 1.0.0)
2022
forensIT : Information Theory Tools for Forensic Analysis (Version 1.1.1)
2023
gamlss.ggplots : Plotting Functions for Generalized Additive Model for Location Scale and Shape (Version 2.1-12)
2022
geneHapR : Gene Haplotype Statistics, Phenotype Association and Visualization (Version 1.2.4)
2022
geneticae : Statistical Tools for the Analysis of Multi Environment Agronomic Trials (Version 0.4.0)
2021
geocmeans : Implementing Methods for Spatial Fuzzy Unsupervised Classification (Version 0.3.4)
2021
ggQC : Quality Control Charts for 'ggplot' (Version 0.0.31)
2017
ggaligner : Visualizing Sequence Alignment by Generating Publication-Ready Plots (Version 0.1)
2023
ggalt : Extra Coordinate Systems, 'Geoms', Statistical Transformations, Scales and Fonts for 'ggplot2' (Version 0.4.0)
2016
glmmPen : High Dimensional Penalized Generalized Linear Mixed Models (pGLMM) (Version 1.5.4.8)
2022
glmmfields : Generalized Linear Mixed Models with Robust Random Fields for Spatiotemporal Modeling (Version 0.1.8)
2018
gridsampler : A Simulation Tool to Determine the Required Sample Size for Repertory Grid Studies (Version 0.6)
2016
growfunctions : Bayesian Non-Parametric Dependent Models for Time-Indexed Functional Data (Version 0.17)
2014
gumboot : Bootstrap Analyses of Sampling Uncertainty in Goodness-of-Fit Statistics (Version 1.0.2)
2021
hybridModels : An R Package for the Stochastic Simulation of Disease Spreading in Dynamic Networks (Version 0.3.8)
2016
hydroToolkit : Hydrological Tools for Handling Hydro-Meteorological Data from Argentina and Chile (Version 0.1.0)
2020
hydrotoolbox : Hydrological Tools for Handling Hydro-Meteorological Data Records (Version 1.1.2)
2021
iNEXT.3D : Interpolation and Extrapolation for Three Dimensions of Biodiversity (Version 1.0.12)
2024
icardaFIGSr : Subsetting using Focused Identification of the Germplasm Strategy (FIGS) (Version 1.0.2)
2021
idiffomix : Integrated Differential Analysis of Multi Omics Data using a Joint Mixture Model (Version 1.0.0)
2025
immunarch : Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design in R (Version 0.10.3)
2020
immuneSIM : Tunable Simulation of B- And T-Cell Receptor Repertoires (Version 0.8.7)
2019
interlineaR : Importing Interlinearized Corpora and Dictionaries as Produced by Descriptive Linguistics Software (Version 1.0)
2018
ivmodel : Statistical Inference and Sensitivity Analysis for Instrumental Variables Model (Version 1.9.1)
2015
kaos : Encoding of Sequences Based on Frequency Matrix Chaos Game Representation (Version 0.1.2)
2019
kehra : Collect, Assemble and Model Air Pollution, Weather and Health Data (Version 0.1)
2016
laketemps : Lake Temperatures Collected by Situ and Satellite Methods from 1985-2009 (Version 0.5.1)
2015
ldatuning : Tuning of the Latent Dirichlet Allocation Models Parameters (Version 1.0.2)
2015
lsbclust : Least-Squares Bilinear Clustering for Three-Way Data (Version 1.1)
2015
mFD : Compute and Illustrate the Multiple Facets of Functional Diversity (Version 1.0.7)
2021
mdpeer : Graph-Constrained Regression with Enhanced Regularization Parameters Selection (Version 1.0.1)
2016
meconetcomp : Compare Microbial Networks of 'trans_network' Class of 'microeco' Package (Version 0.7.0)
2022
medicalrisk : Medical Risk and Comorbidity Tools for ICD-9-CM Data (Version 1.3)
2015
metadeconfoundR : Covariate-Sensitive Analysis of Cross-Sectional High-Dimensional Data (Version 1.0.2)
2024
metafolio : Metapopulation Simulations for Conserving Salmon Through Portfolio Optimization (Version 0.1.2)
2014
metamicrobiomeR : Microbiome Data Analysis & Meta-Analysis with GAMLSS-BEZI & Random Effects (Version 1.2)
2019
miRetrieve : miRNA Text Mining in Abstracts (Version 1.3.4)
2021
mipplot : An Open-Source Tool for Visualization of Climate Mitigation Scenarios (Version 0.3.1)
2021
mlrMBO : Bayesian Optimization and Model-Based Optimization of Expensive Black-Box Functions (Version 1.1.5.1)
2017
mrct : Outlier Detection of Functional Data Based on the Minimum Regularized Covariance Trace Estimator (Version 0.0.1.0)
2023
mrfDepth : Depth Measures in Multivariate, Regression and Functional Settings (Version 1.0.17)
2017
multivar : Penalized Estimation of Multiple-Subject Vector Autoregressive (multi-VAR) Models (Version 1.1.0)
2020
neurobase : 'Neuroconductor' Base Package with Helper Functions for 'nifti' Objects (Version 1.34.0)
2016
nonmem2R : Loading NONMEM Output Files with Functions for Visual Predictive Checks (VPC) and Goodness of Fit (GOF) Plots (Version 0.2.5)
2016
nser : Bhavcopy and Live Market Data from National Stock Exchange (NSE) & Bombay Stock Exchange (BSE) India (Version 1.5.8)
2021
ordinalLBM : Co-Clustering of Ordinal Data via Latent Continuous Random Variables (Version 1.0)
2019
otuSummary : Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rare Biospheres (Version 0.1.2)
2018
phase1PRMD : Personalized Repeated Measurement Design for Phase I Clinical Trials (Version 1.0.2)
2019
plotthis : High-Level Plotting Built Upon 'ggplot2' and Other Plotting Packages (Version 0.9.3)
2024
pqantimalarials : web tool for estimating under-five deaths caused by poor-quality antimalarials in sub-Saharan Africa (Version 0.2)
2014
primerTree : Visually Assessing the Specificity and Informativeness of Primer Pairs (Version 1.1.0)
2013
psData : Download Regularly Maintained Political Science Data Sets (Version 0.2.2)
2014
psd : Adaptive, Sine-Multitaper Power Spectral Density and Cross Spectrum Estimation (Version 2.1.2)
2013
qdap : Bridging the Gap Between Qualitative Data and Quantitative Analysis (Version 2.4.6.1)
2013
qgraph : Graph Plotting Methods, Psychometric Data Visualization and Graphical Model Estimation (Version 1.9.8)
2011
quicR : RT-QuIC Data Formatting and Analysis (Version 2.1.0)
2024
randomForestExplainer : Explaining and Visualizing Random Forests in Terms of Variable Importance (Version 0.10.1)
2017
rankrate : Joint Statistical Models for Preference Learning with Rankings and Ratings (Version 1.2.1)
2022
rapportools : Miscellaneous (Stats) Helper Functions with Sane Defaults for Reporting (Version 1.2)
2014
rdiversity : Measurement and Partitioning of Similarity-Sensitive Biodiversity (Version 2.2.0)
2017
rlfsm : Simulations and Statistical Inference for Linear Fractional Stable Motions (Version 1.1.2)
2018
rmcfs : The MCFS-ID Algorithm for Feature Selection and Interdependency Discovery (Version 1.3.6)
2016
rrcov3way : Robust Methods for Multiway Data Analysis, Applicable also for Compositional Data (Version 0.6-1)
2017
rusk : Beautiful Graphical Representation of Multiplication Tables on a Modular Circle (Version 0.1.1)
2018
saotd : Sentiment Analysis of Twitter Data (Version 0.3.1)
2019
scCATCH : Single Cell Cluster-Based Annotation Toolkit for Cellular Heterogeneity (Version 3.2.2)
2022
scGate : Marker-Based Cell Type Purification for Single-Cell Sequencing Data (Version 1.7.2)
2022
scpi : Prediction Intervals for Synthetic Control Methods with Multiple Treated Units and Staggered Adoption (Version 3.0.1)
2022
seawaveQ : SEAWAVE-Q Model (Version 2.0.2)
2013
sensitivity : Global Sensitivity Analysis of Model Outputs and Importance Measures (Version 1.30.2)
2006
sgdGMF : Estimation of Generalized Matrix Factorization Models via Stochastic Gradient Descent (Version 1.0.1)
2025
shinyKGode : An Interactive Application for ODE Parameter Inference Using Gradient Matching (Version 1.0.5)
2017
shinystan : Interactive Visual and Numerical Diagnostics and Posterior Analysis for Bayesian Models (Version 2.7.0)
2015
singleCellHaystack : A Universal Differential Expression Prediction Tool for Single-Cell and Spatial Genomics Data (Version 1.0.3)
2020
snpReady : Preparing Genotypic Datasets in Order to Run Genomic Analysis (Version 0.9.6)
2017
snplinkage : Single Nucleotide Polymorphisms Linkage Disequilibrium Visualizations (Version 1.2.0)
2023
speaq : Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment, Peak Based Processing, Quantitative Analysis and Visualizations (Version 2.7.0)
2015
spectacles : Storing, Manipulating and Analysis Spectroscopy and Associated Data (Version 0.5-5)
2017
spectralR : Obtain and Visualize Spectral Reflectance Data for Earth Surface Polygons (Version 0.1.4)
2022
stacomiR : Fish Migration Monitoring (Version 0.6.1)
2017
statVisual : Statistical Visualization Tools (Version 1.2.1)
2019
stepgbm : Stepwise Variable Selection for Generalized Boosted Regression Modeling (Version 1.0.1)
2021
tableone : Create 'Table 1' to Describe Baseline Characteristics with or without Propensity Score Weights (Version 0.13.2)
2014
telefit : Estimation and Prediction for Remote Effects Spatial Process Models (Version 1.0.3)
2018
telraamStats : Retrieval and Visualization of Mobility Data from 'Telraam' Sensors (Version 1.1.2)
2024
tensorEVD : A Fast Algorithm to Factorize High-Dimensional Tensor Product Matrices (Version 0.1.4)
2023
tldr : T Loux Doing R: Functions to Simplify Data Analysis and Reporting (Version 0.4.0)
2021
twig : For Streamlining Decision and Economic Evaluation Models using Grammar of Modeling (Version 1.0.0.0)
2025
veccompare : Perform Set Operations on Vectors, Automatically Generating All n-Wise Comparisons, and Create Markdown Output (Version 0.1.0)
2017
viewpoly : A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species (Version 0.4.1)
2021
wTO : Computing Weighted Topological Overlaps (wTO) & Consensus wTO Network (Version 2.1)
2017
warpMix : Mixed Effects Modeling with Warping for Functional Data Using B-Spline (Version 0.1.0)
2017
wevid : Quantifying Performance of a Binary Classifier Through Weight of Evidence (Version 0.6.2)
2018
DYNATE : Dynamic Aggregation Testing (Version 0.1)
2022
clifro : Easily Download and Visualise Climate Data from CliFlo (Version 3.2-5)
2015
forestPSD : Forest Population Structure and Numeric Dynamics (Version 1.0.0)
2024
geneHapR
Visualization : (Version )
0
ggparallel : Variations of Parallel Coordinate Plots for Categorical Data (Version 0.4.0)
2012
graphPAF : Estimating and Displaying Population Attributable Fractions (Version 2.0.1)
2022
covdepGE : Covariate Dependent Graph Estimation (Version 1.0.1)
2022
MMVBVS : Missing Multivariate Bayesian Variable Selection (Version 0.8.0)
2019
povmap : Extension to the 'emdi' Package (Version 1.0.1)
2023
somspace : Spatial Analysis with Self-Organizing Maps (Version 1.2.4)
2019
statcanR : Client for Statistics Canada's Open Economic Data (Version 0.2.6)
2019
IOHanalyzer : Data Analysis Part of 'IOHprofiler' (Version 0.1.8.17)
2019
SpatialDDLS
Networks : (Version )
0
DGM : Dynamic Graphical Models (Version 1.7.4)
2018
MetaComp : EDGE Taxonomy Assignments Visualization (Version 1.1.2)
2017
PhenotypeSimulator
Models : (Version )
0
bulletr : Algorithms for Matching Bullet Lands (Version 0.1)
2017
fastml : Guarded Resampling Workflows for Safe and Automated Machine Learning in R (Version 0.7.6)
2024
infinitefactor : Bayesian Infinite Factor Models (Version 1.0)
2020
pgsc : Computes Powell's Generalized Synthetic Control Estimator (Version 1.0.0)
2018
DoLa : Do CurrÃculo Lattes Para o Programa de Pós-Graduação (Version 0.1.0)
2025
ICAMS
('ICAMS') : (Version )
0
MIMER : Data Wrangling for Antimicrobial Resistance Studies (Version 1.0.4)
2024
MultIS
Visualization : (Version )
0
SBMSplitMerge : Inference for a Generalised SBM with a Split Merge Sampler (Version 1.1.1)
2020
communication
Speech : (Version )
0
doblin
Time-Series : (Version )
0
ggsector : Draw Sectors (Version 1.7.0)
2022
mlxR : Simulation of Longitudinal Data (Version 4.2.0)
2015
ChemoSpec : Exploratory Chemometrics for Spectroscopy (Version 6.3.1)
2011
CimpleG
Deconvolution : (Version )
0
Cleanet
Data : (Version )
0
ClimClass : Climate Classification According to Several Indices (Version 2.1.1)
2014
ClustAssess : Tools for Assessing Clustering (Version 1.1.0)
2021
Cluster.OBeu : Cluster Analysis 'OpenBudgets.eu' (Version 1.2.3)
2018
ClusterGVis : One-Step to Cluster and Visualize Gene Expression Data (Version 0.1.4)
2025
CoDaLoMic : Compositional Models to Longitudinal Microbiome Data (Version 0.1.1)
2025
CoDiNA : Co-Expression Differential Network Analysis (Version 1.1.2)
2018
CommKern : Network-Based Communities and Kernel Machine Methods (Version 1.0.1)
2022
ConsensusOPLS : Consensus OPLS for Multi-Block Data Fusion (Version 1.1.0)
2024
CoreMicrobiomeR : Identification of Core Microbiome (Version 0.1.0)
2024
Cubist : Rule- And Instance-Based Regression Modeling (Version 0.5.1)
2011
CytoProfile : Cytokine Profiling Analysis Tool (Version 0.2.3)
2025
DBHC : Sequence Clustering with Discrete-Output HMMs (Version 0.0.3)
2018
EpiDynamics : Dynamic Models in Epidemiology (Version 0.3.1)
2014
EpiEstim : Estimate Time Varying Reproduction Numbers from Epidemic Curves (Version 2.2-5)
2012
exvatools
Tools : (Version )
0
ez : Easy Analysis and Visualization of Factorial Experiments (Version 4.4-0)
2009
fSRM : Social Relations Analyses with Roles ("Family SRM") (Version 0.6.5)
2014
fabisearch : Change Point Detection in High-Dimensional Time Series Networks (Version 0.0.4.5)
2021
factoextra : Extract and Visualize the Results of Multivariate Data Analyses (Version 1.0.7)
2016
ABHgenotypeR : Easy Visualization of ABH Genotypes (Version 1.0.1)
2016
ALUES : Agricultural Land Use Evaluation System (Version 0.2.1)
2022
ANN2 : Artificial Neural Networks for Anomaly Detection (Version 2.4.0)
2017
ASML : Algorithm Portfolio Selection with Machine Learning (Version 1.1.0)
2025
AdaptGauss : Gaussian Mixture Models (GMM) (Version 1.6)
2015
AgeTopicModels : Inferring Age-Dependent Disease Topic from Diagnosis Data (Version 0.1.0)
2025
AppliedPredictiveModeling : Functions and Data Sets for 'Applied Predictive Modeling' (Version 1.1-7)
2013
AvInertia : Calculate the Inertial Properties of a Flying Bird (Version 0.0.2)
2021
BACCT : Bayesian Augmented Control for Clinical Trials (Version 1.0)
2016
BAwiR : Analysis of Basketball Data (Version 1.4.3)
2018
BBEST : Bayesian Estimation of Incoherent Neutron Scattering Backgrounds (Version 0.1-8)
2014
BEKKs : Multivariate Conditional Volatility Modelling and Forecasting (Version 1.4.6)
2022
BIGr
Species : (Version )
0
BOLDconnectR
Data : (Version )
0
BTSPAS : Bayesian Time-Stratified Population Analysis (Version 2024.11.1)
2010
BayesChange : Bayesian Methods for Change Point Analysis (Version 2.2.0)
2025
BayesPostEst : Generate Postestimation Quantities for Bayesian MCMC Estimation (Version 0.4.0)
2019
BayesianReasoning : Plot Positive and Negative Predictive Values for Medical Tests (Version 0.4.3)
2020
BinarybalancedCut : Threshold Cut Point of Probability for a Binary Classifier Model (Version 0.2)
2017
BioMonTools : Biomonitoring and Bioassessment Calculations (Version 1.2.4)
2025
CACIMAR
Regulations : (Version )
0
CGGP : Composite Grid Gaussian Processes (Version 1.0.4)
2019
CJIVE : Canonical Joint and Individual Variation Explained (CJIVE) (Version 0.1.0)
2023
CMapViz
Analysis : (Version )
0
CSTools
Timescales : (Version )
0
CalibratR : Mapping ML Scores to Calibrated Predictions (Version 0.1.2)
2018
DIMORA : Diffusion Models R Analysis (Version 0.3.6)
2018
DImodelsMulti
Measures : (Version )
0
DVHmetrics : Analyze Dose-Volume Histograms and Check Constraints (Version 0.4.3)
2015
DanielBiostatistics10th : Functions for Wayne W. Daniel's Biostatistics, Tenth Edition (Version 0.2.6)
2022
DataExplorer : Automate Data Exploration and Treatment (Version 0.8.4)
2016
DataVisualizations : Visualizations of High-Dimensional Data (Version 1.4.0)
2018
DeclareDesign : Declare and Diagnose Research Designs (Version 1.1.0)
2018
DeductiveR : Deductive Rational Method (Version 1.1.0)
2021
DescribeDisplay : An Interface to the 'DescribeDisplay' 'GGobi' Plugin (Version 0.2.11)
2006
DirectEffects
Findings : (Version )
0
DiscreteGapStatistic : An Extension of the Gap Statistic for Ordinal/Categorical Data (Version 1.1.2)
2024
DramaAnalysis : Analysis of Dramatic Texts (Version 3.0.2)
2019
DrugSim2DR : Predict Drug Functional Similarity to Drug Repurposing (Version 0.1.2)
2022
EFA.MRFA : Dimensionality Assessment Using Minimum Rank Factor Analysis (Version 1.1.2)
2019
EMJMCMC
Toolbox : (Version )
0
ENMTools : Analysis of Niche Evolution using Niche and Distribution Models (Version 1.1.5)
2020
EZFragility : Compute Neural Fragility for Ictal iEEG Time Series (Version 2.1.1)
2025
EcoEnsemble : A General Framework for Combining Ecosystem Models (Version 1.1.2)
2022
EloOptimized : Optimized Elo Rating Method for Obtaining Dominance Ranks (Version 0.3.2)
2018
EstimDiagnostics : Diagnostic Tools and Unit Tests for Statistical Estimators (Version 0.0.3)
2020
EvaluateCore : Quality Evaluation of Core Collections (Version 0.1.4)
2020
Evomorph : Evolutionary Morphometric Simulation (Version 0.9)
2016
EvolutionaryGames : Important Concepts of Evolutionary Game Theory (Version 0.1.2)
2017
FARS : Factor-Augmented Regression Scenarios (Version 0.7.1)
2025
FCPS : Fundamental Clustering Problems Suite (Version 1.3.5)
2020
FRK : Fixed Rank Kriging (Version 2.3.2)
2017
FinCal
Finance : (Version )
0
ForeCA : Forecastable Component Analysis (Version 0.2.7)
2012
FreqProf : Frequency Profiles Computing and Plotting (Version 0.0.1)
2016
FuncNN : Functional Neural Networks (Version 1.0)
2020
GCCfactor : GCC Estimation of the Multilevel Factor Model (Version 1.1.4)
2023
GCalignR : Simple Peak Alignment for Gas-Chromatography Data (Version 1.0.7)
2017
GEInter : Robust Gene-Environment Interaction Analysis (Version 0.3.2)
2021
GISSB : Network Analysis on the Norwegian Road Network (Version 1.1)
2023
GMSimpute : Generalized Mass Spectrum Missing Peaks Abundance Imputation (Version 0.0.1.0)
2019
GPflexViz : Graphical Visualizations Related to Genomic Prediction (Version 1.0.0)
2025
GREENeR
(GREEN) : (Version )
0
GRIDCOPULA : Bivariate Copula Functions Based on Regular Grid (Version 1.1.0)
2022
GeRnika : Simulation, Visualization and Comparison of Tumor Evolution Data (Version 1.2.0)
2024
GenHMM1d
Models : (Version )
0
GeneralizedUmatrix : Credible Visualization for Two-Dimensional Projections of Data (Version 1.3.1)
2017
GeneralizedUmatrixGPU : Credible Visualization for Two-Dimensional Projections of Data (Version 0.1.10)
2025
GetDFPData
System : (Version )
0
GowerSom
Distance : (Version )
0
GseaVis : Implement for 'GSEA' Enrichment Visualization (Version 0.0.5)
2022
HH : Statistical Analysis and Data Display: Heiberger and Holland (Version 3.1-53)
2006
HLMdiag : Diagnostic Tools for Hierarchical (Multilevel) Linear Models (Version 0.5.1)
2011
HuraultMisc : Guillem Hurault Functions' Library (Version 1.2.1)
2021
IATscores : Implicit Association Test Scores Using Robust Statistics (Version 0.2.8)
2015
IMTest : Information Matrix Test for Generalized Partial Credit Models (Version 1.0.0)
2017
IPV : Item Pool Visualization (Version 1.0.0)
2020
IRTM : Theory-Driven Item Response Theory (IRT) Models (Version 0.0.1.1)
2025
ITNr : Analysis of the International Trade Network (Version 0.7.0)
2018
IceSat2R : ICESat-2 Altimeter Data using R (Version 1.0.7)
2022
IncDTW : Incremental Calculation of Dynamic Time Warping (Version 1.1.4.6)
2017
InterfaceqPCR : GUI to Analyse qPCR Results after PMA Treatment or not (Version 1.0.1)
2017
Irescale : Calculate and Rectify Moran's I (Version 2.3.0)
2019
Kmedians : K-Medians (Version 2.2.0)
2022
L0Learn : Fast Algorithms for Best Subset Selection (Version 2.1.0)
2018
LMMstar : Repeated Measurement Models for Discrete Times (Version 1.1.0)
2021
LOMAR : Localization Microscopy Data Analysis (Version 0.5.1)
2021
LPRelevance : Relevance-Integrated Statistical Inference Engine (Version 3.3)
2019
LSX : Semi-Supervised Algorithm for Document Scaling (Version 1.5.1)
2020
Lahman : Sean 'Lahman' Baseball Database (Version 13.0-0)
2011
LatentBMA
Models : (Version )
0
LeadSense : Medtronic Brain Sense Local Field Potencial Analysis (Version 0.0.2.0)
2025
LipidomicsR
Data : (Version )
0
MBNMAtime : Run Time-Course Model-Based Network Meta-Analysis (MBNMA) Models (Version 0.2.6)
2019
MBNMAdose : Dose-Response MBNMA Models (Version 0.5.0)
2019
MBMethPred : Medulloblastoma Subgroups Prediction (Version 0.1.4.4)
2022
MCTrend : Monte Carlo Trend Analysis (Version 1.0.1)
2023
MEAanalysis : Analyse and Visualise Multi Electrode Array Burst Data (Version 0.1.0)
2025
MF.beta4 : Measuring Ecosystem Multi-Functionality and Its Decomposition (Version 1.1.2)
2023
MGLM : Multivariate Response Generalized Linear Models (Version 0.2.1)
2013
MIGEE : Impute Missing Values and Fitting Linear Mixed Effect Model (Version 0.1.0)
2024
MLFS : Machine Learning Forest Simulator (Version 0.4.3)
2022
MLZ : Mean Length-Based Estimators of Mortality using TMB (Version 0.1.5)
2018
MOEADr : Component-Wise MOEA/D Implementation (Version 1.1.3)
2017
MRFcov : Markov Random Fields with Additional Covariates (Version 1.0.39)
2018
MSEtool : Management Strategy Evaluation Toolkit (Version 3.7.5)
2018
MSRDT : Multi-State Reliability Demonstration Tests (MSRDT) (Version 0.1.0)
2020
MSclassifR : Automated Classification of Mass Spectra (Version 0.5.0)
2022
MTLR : Survival Prediction with Multi-Task Logistic Regression (Version 0.2.1)
2018
MTPS : Multi-Task Prediction using Stacking Algorithms (Version 1.0.2)
2020
MarketMatching : Market Matching and Causal Impact Inference (Version 1.2.1)
2018
Markovchart : Markov Chain-Based Cost-Optimal Control Charts (Version 2.1.5)
2020
MetaNet : Network Analysis for Omics Data (Version 0.2.7)
2024
MicroNiche : Microbial Niche Measurements (Version 1.0.0)
2020
MicrobTiSDA : Microbiome Time-Series Data Analysis (Version 0.1.0)
2025
MiscMetabar : Miscellaneous Functions for Metabarcoding Analysis (Version 0.14.4)
2024
MitoHEAR : Quantification of Mitochondrial DNA Heteroplasmy (Version 0.1.0)
2022
MixSIAR : Bayesian Mixing Models in R (Version 3.1.12)
2016
MortalityTables : A Framework for Various Types of Mortality / Life Tables (Version 2.0.5)
2018
NMADTA : Network Meta-Analysis of Multiple Diagnostic Tests (Version 0.1.2)
2025
NMAoutlier : Detecting Outliers in Network Meta-Analysis (Version 0.2.1)
2019
NMF
(NMF) : (Version )
0
NPBayesImputeCat : Non-Parametric Bayesian Multiple Imputation for Categorical Data (Version 0.6)
2018
NPflow
Data : (Version )
0
NetworkComparr : Statistical Comparison of Networks (Version 0.0.0.9)
2023
NeuralNetTools : Visualization and Analysis Tools for Neural Networks (Version 1.5.3)
2014
NeuralSens : Sensitivity Analysis of Neural Networks (Version 1.1.3)
2019
OpenMx : Extended Structural Equation Modelling (Version 2.22.10)
2015
OpenRepGrid.ic : Interpretive Clustering for Repertory Grids (Version 0.6.2)
2020
OralOpioids : Retrieving Oral Opioid Information (Version 2.0.5)
2023
PANACEA : Personalized Network-Based Anti-Cancer Therapy Evaluation (Version 1.1.0)
2023
PAutilities : Streamline Physical Activity Research (Version 1.2.1)
2019
PCADSC
Comparisons : (Version )
0
PDQutils
Approximations : (Version )
0
PLMIX : Bayesian Analysis of Finite Mixture of Plackett-Luce Models (Version 2.2.0)
2016
PSAboot : Bootstrapping for Propensity Score Analysis (Version 1.3.9)
2013
PTXQC : Quality Report Generation for MaxQuant and mzTab Results (Version 1.1.3)
2016
Petersen : Estimators for Two-Sample Capture-Recapture Studies (Version 2025.3.1)
2023
Plasmidprofiler : Visualization of Plasmid Profile Results (Version 0.1.6)
2017
Platypus : Single-Cell Immune Repertoire and Gene Expression Analysis (Version 3.6.0)
2021
PlotPrjNetworks : Useful Networking Tools for Project Management (Version 1.0.0)
2015
PolicyPortfolios : Tools for Managing, Measuring and Visualizing Policy Portfolios (Version 0.5)
2021
PopComm : Population-Level Cell-Cell Communication Analysis Tools (Version 1.0.0)
2025
PopGenHelpR : Streamline Population Genomic and Genetic Analyses (Version 1.4.2)
2023
PopGenReport
Data : (Version )
0
ProjectionBasedClustering : Projection Based Clustering (Version 1.2.2)
2017
R3port : Report Functions to Create HTML and PDF Files (Version 0.3.1)
2018
RARfreq : Response Adaptive Randomization with 'Frequentist' Approaches (Version 0.1.5)
2023
RDS : Respondent-Driven Sampling (Version 0.9-10)
2009
RDML
Files : (Version )
0
REN : Regularization Ensemble for Robust Portfolio Optimization (Version 0.1.0)
2024
RGENERATEPREC : Tools to Generate Daily-Precipitation Time Series (Version 1.3.2)
2015
RGMM : Robust Mixture Model (Version 2.1.0)
2022
RNeXML : Semantically Rich I/O for the 'NeXML' Format (Version 2.4.11)
2014
ROKET : Optimal Transport-Based Kernel Regression (Version 1.0.0)
2025
RSSL
Classification : (Version )
0
RStoolbox : Remote Sensing Data Analysis (Version 1.0.2.2)
2015
RaJIVE : Robust Angle Based Joint and Individual Variation Explained (Version 1.0)
2021
RareComb : Combinatorial and Statistical Analyses of Rare Events (Version 1.1)
2021
Rata : Automated Test Assembly (Version 0.0.2)
2019
ReSurv : Machine Learning Models for Predicting Claim Counts (Version 1.0.0)
2024
ReliabilityTheory : Structural Reliability Analysis (Version 0.3.1)
2012
RelimpPCR : Relative Importance PCA Regression (Version 0.3.0)
2017
RepertoiR : Repertoire Graphical Visualization (Version 0.0.1)
2021
ReporterScore
Data : (Version )
0
Rirt
Theory : (Version )
0
Rmst : Computerized Adaptive Multistage Testing (Version 0.0.3)
2019
Rnvd3 : An Incomplete Wrapper of the 'nvd3' JavaScript Library (Version 1.0.0)
2021
RobKF : Innovative and/or Additive Outlier Robust Kalman Filtering (Version 1.0.2)
2020
Rprofet : WOE Transformation and Scorecard Builder (Version 3.1.1)
2018
Rtwalk : An MCMC Sampler Using the t-Walk Algorithm (Version 2.0.0)
2015
SAMtool : Stock Assessment Methods Toolkit (Version 1.9.1)
2021
SDMtune : Species Distribution Model Selection (Version 1.3.3)
2019
SEERaBomb : SEER and Atomic Bomb Survivor Data Analysis Tools (Version 2019.2)
2012
SKFCPD : Fast Online Changepoint Detection for Temporally Correlated Data (Version 0.2.4)
2024
SISIR : Select Intervals Suited for Functional Regression (Version 0.2.3)
2016
SLEMI : Statistical Learning Based Estimation of Mutual Information (Version 1.0.2)
2019
SMASH : Subclone Multiplicity Allocation and Somatic Heterogeneity (Version 1.0.0)
2025
SPAS : Stratified-Petersen Analysis System (Version 2025.2.1)
2019
SQMtools : Analyze Results Generated by the 'SqueezeMeta' Pipeline (Version 1.7.2)
2023
SSDM : Stacked Species Distribution Modelling (Version 0.2.11)
2016
SSplots : Stock Status Plots (SSPs) (Version 0.1.2)
2023
STMotif : Discovery of Motifs in Spatial-Time Series (Version 2.0.2)
2018
SVMMaj : Implementation of the SVM-Maj Algorithm (Version 0.2.9.4)
2011
SWMPr : Retrieving, Organizing, and Analyzing Estuary Monitoring Data (Version 2.5.2)
2015
SWIM : Scenario Weights for Importance Measurement (Version 1.0.0)
2019
ScottKnottESD : The Scott-Knott Effect Size Difference (ESD) Test (Version 2.0.3)
2016
SensMap : Sensory and Consumer Data Mapping (Version 0.7)
2017
SensoMineR : Sensory Data Analysis (Version 1.28)
2005
SepTest
Processes : (Version )
0
SeuratExplorer
'Seurat' : (Version )
0
ShinyQuickStarter : 'RStudio' Addin for Building Shiny Apps per Drag & Drop (Version 2.0.1)
2020
SightabilityModel : Wildlife Sightability Modeling (Version 1.5.5)
2012
SixSigma : Six Sigma Tools for Quality Control and Improvement (Version 0.11.1)
2011
SleepCycles : Sleep Cycle Detection (Version 1.1.4)
2020
SlideCNA : Calls Copy Number Alterations from Slide-Seq Data (Version 0.1.0)
2025
SongEvo : An Individual-Based Model of Bird Song Evolution (Version 1.0.0)
2019
SoundShape : Sound Waves Onto Morphometric Data (Version 1.3.2)
2020
SoyNAM : Soybean Nested Association Mapping Dataset (Version 1.6.2)
2015
SpaCCI : Spatially Aware Cell-Cell Interaction Analysis (Version 1.0.4)
2024
StMoMo : Stochastic Mortality Modelling (Version 0.4.1)
2015
Superpower : Simulation-Based Power Analysis for Factorial Designs (Version 0.2.4.1)
2020
TBA : Collection of 'shiny' Apps for Tree Breeding Analysis (Version 0.1.0)
2025
TCIU : Spacekime Analytics, Time Complexity and Inferential Uncertainty (Version 1.2.7)
2020
TSstudio : Functions for Time Series Analysis and Forecasting (Version 0.1.7)
2018
TcGSA : Time-Course Gene Set Analysis (Version 0.12.13)
2014
Tendril : Compute and Display Tendril Plots (Version 2.0.4)
2020
Tmisc : Turner Miscellaneous (Version 1.0.1)
2015
TriMatch : Propensity Score Matching of Non-Binary Treatments (Version 1.0.1)
2013
TripleR
Groups : (Version )
0
TropFishR : Tropical Fisheries Analysis (Version 1.6.6)
2016
TwoTimeScales : Analysis of Event Data with Two Time Scales (Version 1.0.0)
2024
UVdose : Estimate Ambient UV Dose from Location and Date Info (Version 0.1.1)
2025
Umatrix : Visualization of Structures in High-Dimensional Data (Version 4.0.2)
2017
Upsilon : Another Test of Association for Count Data (Version 0.1.0)
2026
VDAP : Peptide Array Analysis Tools (Version 2.0.0)
2016
ViSiElse : A Visual Tool for Behavior Analysis over Time (Version 1.2.2)
2016
WINS : The R WINS Package (Version 1.5.1)
2021
WaverideR : Extracting Signals from Wavelet Spectra (Version 0.4.1)
2023
WebAnalytics : Web Server Log Analysis (Version 0.9.14)
2022
WordListsAnalytics : Multiple Data Analysis Tools for Property Listing Tasks (Version 0.2.4)
2024
aMNLFA : Automated Moderated Nonlinear Factor Analysis Using 'M-plus' (Version 1.1.2)
2018
abe : Augmented Backward Elimination (Version 5.1.2)
2017
actel : Acoustic Telemetry Data Analysis (Version 1.3.0)
2020
adace : Estimator of the Adherer Average Causal Effect (Version 1.0.2)
2022
adegenet : Exploratory Analysis of Genetic and Genomic Data (Version 2.1.11)
2007
adept : Adaptive Empirical Pattern Transformation (Version 1.2)
2019
admix : Package Admix for Admixture (aka Contamination) Models (Version 2.5.2)
2021
afex : Analysis of Factorial Experiments (Version 1.5-1)
2012
agridat : Agricultural Datasets (Version 1.26)
2011
aiRly : R Wrapper for 'Airly' API (Version 0.1.0)
2020
aifeducation : Artificial Intelligence for Education (Version 1.1.3)
2023
aldvmm : Adjusted Limited Dependent Variable Mixture Models (Version 0.9.0)
2021
allMT : Acute Lymphoblastic Leukemia Maintenance Therapy Analysis (Version 0.1.0)
2023
alluvial : Alluvial Diagrams (Version 0.1-2)
2016
anabel : Analysis of Binding Events + l (Version 3.0.2)
2023
analyzer : Data Analysis and Automated R Notebook Generation (Version 1.0.1)
2020
animint2 : Animated Interactive Grammar of Graphics (Version 2025.10.17)
2019
aslib : Interface to the Algorithm Selection Benchmark Library (Version 0.1.3)
2016
atable : Create Tables for Reporting Clinical Trials (Version 0.1.15)
2018
augmentedRCBD : Analysis of Augmented Randomised Complete Block Designs (Version 0.1.7)
2018
backShift : Learning Causal Cyclic Graphs from Unknown Shift Interventions (Version 0.1.4.3)
2015
baker : "Nested Partially Latent Class Models" (Version 1.0.4)
2022
bartXViz : Visualization of BART and BARP using SHAP (Version 1.0.9)
2025
baseballr : Acquiring and Analyzing Baseball Data (Version 1.6.0)
2022
bayefdr
Rate : (Version )
0
bayesPop : Probabilistic Population Projection (Version 11.0-3)
2012
bayesdfa : Bayesian Dynamic Factor Analysis (DFA) with 'Stan' (Version 1.3.4)
2018
bayesplot : Plotting for Bayesian Models (Version 1.15.0)
2016
beezdemand : Behavioral Economic Easy Demand (Version 0.1.2)
2018
bioclim : Bioclimatic Analysis and Classification (Version 0.4.0)
2022
biomod2 : Ensemble Platform for Species Distribution Modeling (Version 4.3-4-3)
2012
birdscanR
Radars : (Version )
0
bmlm : Bayesian Multilevel Mediation (Version 1.3.15)
2016
bmscstan : Bayesian Multilevel Single Case Models using 'Stan' (Version 1.2.1.0)
2020
bnmonitor : An Implementation of Sensitivity Analysis in Bayesian Networks (Version 0.2.2)
2021
bodenmiller : Profiling of Peripheral Blood Mononuclear Cells using CyTOF (Version 0.1.1)
2015
bootCT : Bootstrapping the ARDL Tests for Cointegration (Version 2.1.0)
2022
boral : Bayesian Ordination and Regression AnaLysis (Version 2.0.3)
2014
bspcov : Bayesian Sparse Estimation of a Covariance Matrix (Version 1.0.3)
2024
burnr : Forest Fire History Analysis (Version 0.6.1)
2016
camtrapR : Camera Trap Data Management and Analysis Framework (Version 3.0.0)
2015
cancerGI : Analyses of Cancer Gene Interaction (Version 1.0.1)
2016
caret : Classification and Regression Training (Version 7.0-1)
2007
cartograflow : Filtering Matrix for Flow Mapping (Version 1.0.5)
2019
causalPAF : Causal Effect for Population Attributable Fractions (PAF) (Version 1.2.5)
2021
causaldrf : Estimating Causal Dose Response Functions (Version 0.4.2)
2015
cellWise : Analyzing Data with Cellwise Outliers (Version 2.5.5)
2016
chem16S : Chemical Metrics for Microbial Communities (Version 1.2.0)
2023
childsds : Data and Methods Around Reference Values in Pediatrics (Version 0.9.11)
2014
chillR
Trees : (Version )
0
chooseGCM
Modeling : (Version )
0
classmap : Visualizing Classification Results (Version 1.2.6)
2021
clayringsmiletus : Clay Stacking Rings Found in Miletus (Data) (Version 1.0.2)
2025
clhs : Conditioned Latin Hypercube Sampling (Version 0.9.2)
2012
clickstream : Analyzes Clickstreams Based on Markov Chains (Version 1.3.4)
2014
clmplus : Tool-Box of Chain Ladder Plus Models (Version 1.0.1)
2022
clustMD : Model Based Clustering for Mixed Data (Version 1.2.2)
2014
clustNet : Network-Based Clustering (Version 1.2.0)
2023
clusterMI : Cluster Analysis with Missing Values by Multiple Imputation (Version 1.5)
2024
cmahalanobis : Calculate Distance Measures for DataFrames (Version 1.0.0)
2024
codyn : Community Dynamics Metrics (Version 2.0.5)
2015
coefplot : Plots Coefficients from Fitted Models (Version 1.2.9)
2011
colorBlindness : Safe Color Set for Color Blindness (Version 0.1.9)
2020
compareMCMCs : Compare MCMC Efficiency from 'nimble' and/or Other MCMC Engines (Version 0.6.0)
2022
complexlm : Linear Fitting for Complex Valued Data (Version 1.1.3)
2023
compositeReliabilityInNestedDesigns
Designs : (Version )
0
conText : 'a la Carte' on Text (ConText) Embedding Regression (Version 3.0.0)
2021
connected : Visualize and Improve Connectedness of Factors in Tables (Version 1.1)
2025
conos : Clustering on Network of Samples (Version 1.5.2)
2021
contsurvplot
Outcome : (Version )
0
corona : Coronavirus ('Rona') Data Exploration (Version 0.3.0)
2020
cosimmr : Fast Fitting of Stable Isotope Mixing Models with Covariates (Version 1.0.12)
2024
cplm : Compound Poisson Linear Models (Version 0.7-12.1)
2011
crctStepdown : Univariate Analysis of Cluster Trials with Multiple Outcomes (Version 0.5.2)
2021
critpath : Setting the Critical Path in Project Management (Version 0.2.3)
2021
csdata : Structural Data for Norway (Version 2024.4.26)
2022
csodata : Download Data from the CSO 'PxStat' API (Version 1.5.1)
2019
cuRe : Parametric Cure Model Estimation (Version 1.1.1)
2020
cytofan : Plot Fan Plots for Cytometry Data using 'ggplot2' (Version 0.1.1)
2018
dartR.base : Analysing 'SNP' and 'Silicodart' Data - Basic Functions (Version 1.0.7)
2023
dartR.captive : Analysing 'SNP' Data to Support Captive Breeding (Version 1.0.2)
2023
dartR.sim : Computer Simulations of 'SNP' Data (Version 0.71)
2023
data360r : Wrapper for 'TCdata360' and 'Govdata360' API (Version 1.0.9)
2017
dataprep : Efficient and Flexible Data Preprocessing Tools (Version 0.1.5)
2021
datplot
Analysis) : (Version )
0
dbhydroR : 'DBHYDRO' Hydrologic and Water Quality Data (Version 0.2-8)
2016
dbmss : Distance-Based Measures of Spatial Structures (Version 2.11-0)
2012
dendroNetwork
Similarity : (Version )
0
denovolyzeR : Statistical Analyses of De Novo Genetic Variants (Version 0.2.0)
2015
desplot : Plotting Field Plans for Agricultural Experiments (Version 1.10)
2015
detectXOR : XOR Pattern Detection and Visualization (Version 0.1.0)
2025
dgpsi
Emulations : (Version )
0
diffEnrich
Analysis : (Version )
0
dlim : Distributed Lag Interaction Model (Version 0.2.1)
2024
do : Data Operator (Version 2.0.0.1)
2019
dominanceanalysis : Dominance Analysis (Version 2.1.1)
2019
drimmR : Estimation, Simulation and Reliability of Drifting Markov Models (Version 1.0.1)
2021
drpop : Efficient and Doubly Robust Population Size Estimation (Version 0.0.3)
2021
dsBase : 'DataSHIELD' Server Side Base Functions (Version 6.3.4)
2025
dsa : Seasonal Adjustment of Daily Time Series (Version 1.0.12)
2018
dynRB : Dynamic Range Boxes (Version 0.19)
2015
dynr : Dynamic Models with Regime-Switching (Version 0.1.16-114)
2016
dynwrap : Representing and Inferring Single-Cell Trajectories (Version 1.2.5)
2019
eSIR : Extended State-Space SIR Models (Version 0.4.2)
2021
easynem : Nematode Community Analysis (Version 1.0.3)
2025
eat : Efficiency Analysis Trees (Version 0.1.4)
2021
eatRep : Educational Assessment Tools for Replication Methods (Version 0.15.2)
2021
ebvcube : Working with netCDF for Essential Biodiversity Variables (Version 0.5.2)
2022
econullnetr : Null Model Analysis for Ecological Networks (Version 0.2.2)
2017
ecostats : Code and Data Accompanying the Eco-Stats Text (Warton 2022) (Version 1.2.2)
2020
ecotraj : Ecological Trajectory Analysis (Version 1.2.0)
2021
ecr : Evolutionary Computation in R (Version 2.1.1)
2016
elaborator : A 'shiny' Application for Exploring Laboratory Data (Version 1.3.5)
2020
emdi : Estimating and Mapping Disaggregated Indicators (Version 2.2.3)
2016
enpls : Ensemble Partial Least Squares Regression (Version 6.1.1)
2014
ensembleTax : Ensemble Taxonomic Assignments of Amplicon Sequencing Data (Version 1.1.1)
2021
entropart : Entropy Partitioning to Measure Diversity (Version 1.6-16)
2013
epca : Exploratory Principal Component Analysis (Version 1.1.0)
2020
epinetr : Epistatic Network Modelling with Forward-Time Simulation (Version 0.96)
2020
esviz : Plotting Functions for Climate Science and Services (Version 0.0.1)
2026
ethnobotanyR : Calculate Quantitative Ethnobotany Indices (Version 0.1.9)
2019
etrm : Energy Trading and Risk Management (Version 1.0.1)
2021
evolqg : Evolutionary Quantitative Genetics (Version 0.3-6)
2015
expDB : Database for Experiment Dataset (Version 0.3.0)
2021
explainer : Machine Learning Model Explainer (Version 1.0.2)
2023
exreport : Fast, Reliable and Elegant Reproducible Research (Version 0.4.1)
2015
extraSuperpower : Power Calculation for Two-Way Factorial Designs (Version 1.6.2)
2025
fcm : Inference of Fuzzy Cognitive Maps (FCMs) (Version 0.1.3)
2017
fdaPOIFD : Partially Observed Integrated Functional Depth (Version 2.0.1)
2021
fdapaceShiny : A Shiny App for the 'fdapace' Package (Version 1.0.5)
2021
fddm : Fast Implementation of the Diffusion Decision Model (Version 1.0-2)
2020
fect : Fixed Effects Counterfactual Estimators (Version 2.1.0)
2022
firebehavioR : Prediction of Wildland Fire Behavior and Hazard (Version 0.1.2)
2018
fitHeavyTail : Mean and Covariance Matrix Estimation under Heavy Tails (Version 0.2.0)
2019
fitODBOD : Modeling Over Dispersed Binomial Outcome Data Using BMD and ABD (Version 1.5.5)
2018
fitbitViz : 'Fitbit' Visualizations (Version 1.0.7)
2021
fmriqa : Functional MRI Quality Assurance Routines (Version 0.3.0)
2017
footBayes : Fitting Bayesian and MLE Football Models (Version 2.0.0)
2022
foqat : Field Observation Quick Analysis Toolkit (Version 2.0.8.2)
2021
frailtySurv : General Semiparametric Shared Frailty Model (Version 1.3.8)
2015
freesurfer : Wrapper Functions for 'Freesurfer' (Version 1.8.1)
2016
frequencyConnectedness : Spectral Decomposition of Connectedness Measures (Version 0.2.4)
2017
funData : An S4 Class for Functional Data (Version 1.3-9)
2016
funModeling : Exploratory Data Analysis and Data Preparation Tool-Box (Version 1.9.5)
2016
funtimes : Functions for Time Series Analysis (Version 10.0)
2015
fuzzylink : Probabilistic Record Linkage Using Pretrained Text Embeddings (Version 0.2.5)
2025
gWQS : Generalized Weighted Quantile Sum Regression (Version 3.0.5)
2016
gapmap : Drawing Gapped Cluster Heatmaps with 'ggplot2' (Version 1.0.0)
2014
gdm : Generalized Dissimilarity Modeling (Version 1.6.0-7)
2015
geeLite : Building and Managing Local Databases from 'Google Earth Engine' (Version 1.0.6)
2025
genBaRcode : Analysis and Visualization Tools for Genetic Barcode Data (Version 1.2.8)
2017
genekitr : Gene Analysis Toolkit (Version 1.2.8)
2021
geocmeans
Classification : (Version )
0
germinationmetrics : Seed Germination Indices and Curve Fitting (Version 0.1.9)
2018
gfoRmulaICE : Parametric Iterative Conditional Expectation G-Formula (Version 1.1.1)
2024
ggaligner
Plots : (Version )
0
ggcorrplot : Visualization of a Correlation Matrix using 'ggplot2' (Version 0.1.4.1)
2016
gge : Genotype Plus Genotype-by-Environment Biplots (Version 1.9)
2015
ggenealogy : Visualization Tools for Genealogical Data (Version 1.0.3)
2015
ggforce : Accelerating 'ggplot2' (Version 0.5.0)
2016
ggiraphExtra : Make Interactive 'ggplot2'. Extension to 'ggplot2' and 'ggiraph' (Version 0.3.0)
2016
ggrisk : Risk Score Plot for Cox Regression (Version 1.3)
2020
ggscidca : Plotting Decision Curve Analysis with Coloured Bars (Version 0.2.8)
2024
ghcm : Functional Conditional Independence Testing with the GHCM (Version 3.0.1)
2021
ghypernet : Fit and Simulate Generalised Hypergeometric Ensembles of Graphs (Version 1.1.0)
2020
glmmPen
(pGLMM) : (Version )
0
glmmTMB : Generalized Linear Mixed Models using Template Model Builder (Version 1.1.14)
2017
grabsampling : Probability of Detection for Grab Sample Selection (Version 1.0.0)
2020
grandR : Comprehensive Analysis of Nucleotide Conversion Sequencing Data (Version 0.2.7)
2022
grapesAgri1 : Collection of Shiny Apps for Agricultural Research Data Analysis (Version 1.1.0)
2021
grapherator : A Modular Multi-Step Graph Generator (Version 1.0.0)
2017
gspcr : Generalized Supervised Principal Component Regression (Version 0.9.5)
2023
gstar : Generalized Space-Time Autoregressive Model (Version 0.1.0)
2019
gumboot
Statistics : (Version )
0
hJAM : Hierarchical Joint Analysis of Marginal Summary Statistics (Version 1.0.0)
2020
handwriter : Handwriting Analysis in R (Version 3.2.4)
2021
handwriterRF : Handwriting Analysis with Random Forests (Version 1.1.1)
2024
hdf5r : Interface to the 'HDF5' Binary Data Format (Version 1.3.12)
2017
hdflex : High-Dimensional Aggregate Density Forecasts (Version 0.3.2)
2023
heatmaply : Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2' (Version 1.6.0)
2016
henna : A Versatile Visualization Suite (Version 0.3.4)
2025
heplots : Visualizing Hypothesis Tests in Multivariate Linear Models (Version 1.8.1)
2007
heuristica : Heuristics Including Take the Best and Unit-Weight Linear (Version 1.0.3)
2016
hicream : HIC diffeREntial Analysis Method (Version 0.0.3)
2025
hilbertSimilarity : Hilbert Similarity Index for High Dimensional Data (Version 0.4.4)
2019
hlaR : Tools for HLA Data (Version 1.0.0)
2021
hydraulics : Basic Pipe and Open Channel Hydraulics (Version 0.7.2)
2020
hydroroute : Trace Longitudinal Hydropeaking Waves (Version 0.1.2)
2022
hydrotoolbox
Records : (Version )
0
hyfo : Hydrology and Climate Forecasting (Version 1.4.6)
2015
iCARH : Integrative Conditional Autoregressive Horseshoe Model (Version 2.0.2.1)
2019
iNEXT.3D
Biodiversity : (Version )
0
iNEXT.4steps : Four-Step Biodiversity Analysis Based on 'iNEXT' (Version 1.0.1)
2024
iNEXT : Interpolation and Extrapolation for Species Diversity (Version 3.0.2)
2015
icpack : Survival Analysis of Interval-Censored Data (Version 0.1.0)
2024
ideanet : Integrating Data Exchange and Analysis for Networks ('ideanet') (Version 1.1.1)
2024
idopNetwork : A Network Tool to Dissect Spatial Community Ecology (Version 0.1.2)
2022
ifaTools : Toolkit for Item Factor Analysis with 'OpenMx' (Version 0.23)
2015
iheatmapr : Interactive, Complex Heatmaps (Version 0.7.1)
2017
imputeR : A General Multivariate Imputation Framework (Version 2.2)
2014
imputeTestbench : Test Bench for the Comparison of Imputation Methods (Version 3.0.3)
2016
inDAGO : A GUI for Dual and Bulk RNA-Sequencing Analysis (Version 1.0.3)
2025
inTextSummaryTable : Creation of in-Text Summary Table (Version 3.3.5)
2021
intRinsic : Likelihood-Based Intrinsic Dimension Estimators (Version 1.1.2)
2022
intradayModel : Modeling and Forecasting Financial Intraday Signals (Version 0.0.1)
2023
iprior : Regression Modelling using I-Priors (Version 0.7.4)
2016
irtQ : Unidimensional Item Response Theory Modeling (Version 1.0.0)
2023
irtrees : Estimation of Tree-Based Item Response Models (Version 1.0.0)
2012
isobxr : Stable Isotope Box Modelling in R (Version 2.0.0)
2021
jollofR : Small Area Population Estimation by Demographics (Version 0.6.5)
2025
jtdm : Joint Modelling of Functional Traits (Version 0.1-3)
2023
kaos
Representation : (Version )
0
kehra
Data : (Version )
0
kergp : Gaussian Process Laboratory (Version 0.5.8)
2015
kernelPhil : Kernel Smoothing Tools for Philology and Historical Dialectology (Version 0.2)
2021
kerntools : Kernel Functions and Tools for Machine Learning Applications (Version 1.2.0)
2024
kgraph : Knowledge Graphs Constructions and Visualizations (Version 1.2.0)
2024
knitrBootstrap : 'knitr' Bootstrap Framework (Version 1.0.4)
2013
laketemps
1985-2009 : (Version )
0
lans2r : Work with Look at NanoSIMS Data in R (Version 1.2.0)
2017
latbias : Calculate the Latitudinal Bias Index (Version 1.0.0)
2025
lavaSearch2 : Tools for Model Specification in the Latent Variable Framework (Version 2.0.3)
2018
lda : Collapsed Gibbs Sampling Methods for Topic Models (Version 1.5.2)
2009
lddmm : Longitudinal Drift-Diffusion Mixed Models (LDDMM) (Version 0.4.2)
2021
lfproQC : Quality Control for Label-Free Proteomics Expression Data (Version 1.4.1)
2024
likert : Analysis and Visualization Likert Items (Version 1.3.5.1)
2013
lipidomeR : Integrative Visualizations of the Lipidome (Version 0.1.2)
2020
lolog : Latent Order Logistic Graph Models (Version 1.3.2)
2018
longreadvqs : Viral Quasispecies Comparison from Long-Read Sequencing Data (Version 0.1.4)
2024
lsl : Latent Structure Learning (Version 0.5.6)
2015
mFD
Diversity : (Version )
0
macrosyntR : Draw Ordered Oxford Grids and Chord Diagrams (Version 0.3.3)
2023
mandelbrot : Generates Views on the Mandelbrot Set (Version 0.2.0)
2017
manhplot : The Manhattan++ Plot (Version 1.1)
2019
mapStats : Geographic Display of Survey Data Statistics (Version 3.2)
2014
mappoly : Genetic Linkage Maps in Autopolyploids (Version 0.4.2)
2020
marmap : Import, Plot and Analyze Bathymetric and Topographic Data (Version 1.0.12)
2013
matricks : Useful Tricks for Matrix Manipulation (Version 0.8.2)
2020
matrixStrucTest : Tests of Matrix Structure for Construct Validation (Version 1.0.0)
2019
matrixdist : Statistics for Matrix Distributions (Version 1.1.9)
2021
mbsts : Multivariate Bayesian Structural Time Series (Version 3.0)
2020
mcb : Model Confidence Bounds (Version 0.1.15)
2020
mcvis : Multi-Collinearity Visualization (Version 1.0.8)
2020
metR : Tools for Easier Analysis of Meteorological Fields (Version 0.18.3)
2018
metadeconfoundR
Data : (Version )
0
metaprotr : Metaproteomics Post-Processing Analysis (Version 1.2.2)
2021
mfpp : 'Matrix-Based Flexible Project Planning' (Version 0.0.9)
2022
mgc : Multiscale Graph Correlation (Version 2.0.2)
2018
mhtboot : Multiple Hypothesis Test Based on Distribution of p Values (Version 1.3.3)
2016
microeco : Microbial Community Ecology Data Analysis (Version 1.16.0)
2020
microplot : Microplots (Sparklines) in 'LaTeX', 'Word', 'HTML', 'Excel' (Version 1.0-47)
2016
mipplot
Scenarios : (Version )
0
mispitools : Missing Person Identification Tools (Version 1.4.0)
2021
missoNet : Joint Sparse Regression & Network Learning with Missing Data (Version 1.5.1)
2022
mizer : Dynamic Multi-Species Size Spectrum Modelling (Version 2.5.4)
2013
mlergm : Multilevel Exponential-Family Random Graph Models (Version 0.8.1)
2018
moderate.mediation : Causal Moderated Mediation Analysis (Version 0.0.12)
2023
modnets : Modeling Moderated Networks (Version 0.9.0)
2021
morph : 3D Segmentation of Voxels into Morphologic Classes (Version 1.1.0)
2021
morse : Modelling Reproduction and Survival Data in Ecotoxicology (Version 3.3.5)
2014
mortAAR : Analysis of Archaeological Mortality Data (Version 1.1.8)
2017
mosaicData : Project MOSAIC Data Sets (Version 0.20.4)
2014
motifr : Motif Analysis in Multi-Level Networks (Version 1.0.0)
2020
mplot : Graphical Model Stability and Variable Selection Procedures (Version 1.0.6)
2015
mpower : Power Analysis via Monte Carlo Simulation for Correlated Data (Version 0.1.0)
2022
mrfDepth
Settings : (Version )
0
mstclustering : "MST-Based Clustering" (Version 1.0.0.0)
2022
mudfold : Multiple UniDimensional unFOLDing (Version 1.1.21)
2017
multiSA : Multi-Stock Assessment (Version 0.1.0)
2026
multibreakeR : Tests for a Structural Change in Multivariate Time Series (Version 0.1.0)
2023
multifear : Multiverse Analyses for Conditioning Data (Version 0.1.5)
2021
musclesyneRgies : Extract Muscle Synergies from Electromyography (Version 1.2.5)
2022
mutSignatures : Decipher Mutational Signatures from Somatic Mutational Catalogs (Version 2.1.1)
2017
mvdalab : Multivariate Data Analysis Laboratory (Version 1.7)
2016
mvnimpute : Simultaneously Impute the Missing and Censored Values (Version 1.0.1)
2022
mxfda : A Functional Data Analysis Package for Spatial Single Cell Data (Version 0.2.2-1)
2024
nLTT : Calculate the NLTT Statistic (Version 1.4.10)
2015
nandb : Number and Brightness Image Analysis (Version 2.1.1)
2017
nc : Named Capture to Data Tables (Version 2025.3.24)
2019
ncappc : NCA Calculations and Population Model Diagnosis (Version 1.0.0)
2015
nestedpp : Performance Profiles and Nested Performance Profiles (Version 0.2.0)
2022
netcom : NETwork COMparison Inference (Version 2.1.7)
2017
netgsa : Network-Based Gene Set Analysis (Version 4.0.7)
2014
networktools : Tools for Identifying Important Nodes in Networks (Version 1.6.0)
2017
networktree : Recursive Partitioning of Network Models (Version 1.0.1)
2018
neurobase
Objects : (Version )
0
nlpembeds : Natural Language Processing Embeddings (Version 1.0.0)
2025
nonsmooth : Nonparametric Methods for Smoothing Nonsmooth Data (Version 1.0.0)
2024
oaxaca : Blinder-Oaxaca Decomposition (Version 0.1.5)
2014
obAnalytics : Limit Order Book Analytics (Version 0.1.1)
2016
oRus : Operational Research User Stories (Version 1.0.0)
2020
oceanmap : A Plotting Toolbox for 2D Oceanographic Data (Version 0.1.7)
2016
onemap : Construction of Genetic Maps in Experimental Crosses (Version 3.2.4)
2008
optiSel : Optimum Contribution Selection and Population Genetics (Version 2.0.9)
2016
opticskxi : OPTICS K-Xi Density-Based Clustering (Version 1.2.1)
2019
ordinalLBM
Variables : (Version )
0
outreg : Regression Table for Publication (Version 0.2.2)
2017
pRF : Permutation Significance for Random Forests (Version 1.2)
2015
pacheck : Probabilistic Analysis Check Package (Version 0.2.2)
2026
pals : Color Palettes, Colormaps, and Tools to Evaluate Them (Version 1.10)
2016
panelvar : Panel Vector Autoregression (Version 0.5.6)
2018
patientProfilesVis : Visualization of Patient Profiles (Version 2.0.10)
2021
patterncausality : Pattern Causality Algorithm (Version 0.2.3)
2024
pcFactorStan : Stan Models for the Paired Comparison Factor Model (Version 1.5.4)
2019
pctax : Professional Comprehensive Omics Data Analysis (Version 0.1.3)
2024
pcutils : Some Useful Functions for Statistics and Visualization (Version 0.2.8)
2023
pdSpecEst : An Analysis Toolbox for Hermitian Positive Definite Matrices (Version 1.2.6)
2017
penppml : Penalized Poisson Pseudo Maximum Likelihood Regression (Version 0.2.4)
2021
petersenlab : A Collection of R Functions by the Petersen Lab (Version 1.2.0)
2024
phase1PRMD
Trials : (Version )
0
phylosamp : Sample Size Calculations for Molecular and Phylogenetic Studies (Version 1.0.1)
2021
phylter : Detect and Remove Outliers in Phylogenomics Datasets (Version 0.9.12)
2023
pingers : Identify, Ping, and Log Internet Provider Connection Data (Version 0.1.1)
2018
pixiedust : Tables so Beautifully Fine-Tuned You Will Believe It's Magic (Version 0.9.4)
2015
plot4fun : Just Plot for Fun (Version 0.1.1)
2024
plotthis
Packages : (Version )
0
plsgenomics : PLS Analyses for Genomics (Version 1.5-3)
2005
polymapR : Linkage Analysis in Outcrossing Polyploids (Version 1.1.7)
2017
polypoly : Helper Functions for Orthogonal Polynomials (Version 0.0.3)
2021
polyqtlR : QTL Analysis in Autopolyploid Bi-Parental F1 Populations (Version 0.1.1)
2020
pompom : Person-Oriented Method and Perturbation on the Model (Version 0.2.1)
2018
pould : Phased or Unphased Linkage Disequilibrium (Version 1.0.1)
2020
powerbydesign : Power Estimates for ANOVA Designs (Version 1.0.5)
2016
predict3d : Draw Three Dimensional Predict Plot Using Package 'rgl' (Version 0.1.6)
2019
predictMe : Visualize Individual Prediction Performance (Version 0.1)
2022
prepdat : Preparing Experimental Data for Statistical Analysis (Version 1.0.8)
2015
primer : Functions and Data for the Book, a Primer of Ecology with R (Version 1.2.0)
2009
primerTree
Pairs : (Version )
0
prioriactions : Multi-Action Conservation Planning (Version 0.5.0)
2021
productplots : Product Plots for R (Version 0.1.2)
2011
promor : Proteomics Data Analysis and Modeling Tools (Version 0.2.2)
2022
promotionImpact : Analysis & Measurement of Promotion Effectiveness (Version 0.1.5)
2019
pscore : Standardizing Physiological Composite Risk Endpoints (Version 0.4.1)
2015
ptycho : Bayesian Variable Selection with Hierarchical Priors (Version 1.1-5)
2015
puzzle : Assembling Data Sets for Non-Linear Mixed Effects Modeling (Version 0.0.1)
2019
pvars : VAR Modeling for Heterogeneous Panels (Version 1.1.1)
2025
pxR : PC-Axis with R (Version 0.42.8)
2011
qad : Quantification of Asymmetric Dependence (Version 1.0.6)
2018
qape : Quantile of Absolute Prediction Errors (Version 2.1)
2020
qdap
Analysis : (Version )
0
quadrupen : Sparsity by Worst-Case Quadratic Penalties (Version 0.2-13)
2012
quantkriging : Quantile Kriging for Stochastic Simulations with Replication (Version 0.1.0)
2020
r4ss : R Code for Stock Synthesis (Version 1.44.0)
2009
rACMEMEEV : Multi-Variate Measurement Error Adjustment (Version 1.0.1)
2025
rADA : Statistical Analysis and Cut-Point Determination of Immunoassays (Version 1.1.9)
2021
rAmCharts4 : Interface to the JavaScript Library 'amCharts 4' (Version 1.6.0)
2020
rKOMICS : Minicircle Sequence Classes (MSC) Analyses (Version 1.3)
2021
rYoutheria : Access to the YouTheria Mammal Trait Database (Version 1.0.3)
2014
ragtop : Pricing Equity Derivatives with Extensions of Black-Scholes (Version 1.2.0)
2016
randomForestExplainer
Importance : (Version )
0
randomizeR : Randomization for Clinical Trials (Version 3.0.2)
2015
rapportools
Reporting : (Version )
0
rayshader : Create Maps and Visualize Data in 2D and 3D (Version 0.37.3)
2018
rbcc : Risk-Based Control Charts (Version 0.1.5)
2023
rbi.helpers : 'rbi' Helper Functions (Version 0.4.1)
2019
rbi : Interface to 'LibBi' (Version 1.0.0)
2016
rcontroll : Individual-Based Forest Growth Simulator 'TROLL' (Version 0.1.2)
2023
rdiversity
Biodiversity : (Version )
0
reddPrec : Reconstruction of Daily Data - Precipitation (Version 3.0.2)
2016
refund.shiny : Interactive Plotting for Functional Data Analyses (Version 1.1)
2015
refund : Regression with Functional Data (Version 0.1-38)
2010
remaCor : Random Effects Meta-Analysis for Correlated Test Statistics (Version 0.0.20)
2022
remotePARTS : Spatiotemporal Autoregression Analyses for Large Data Sets (Version 1.0.4)
2023
rfordummies : Code Examples to Accompany the Book "R for Dummies" (Version 0.1.6)
2014
rgm : Advanced Inference with Random Graphical Models (Version 1.0.4)
2024
riverconn : Fragmentation and Connectivity Indices for Riverscapes (Version 0.3.31)
2022
rmcfs
Discovery : (Version )
0
rmoo : Multi-Objective Optimization in R (Version 0.2.0)
2020
rnaCrosslinkOO : Analysis of RNA Crosslinking Data (Version 0.1.4)
2024
rnmamod : Bayesian Network Meta-Analysis with Missing Participants (Version 0.5.0)
2021
robCompositions : Compositional Data Analysis (Version 2.4.2)
2009
robin : ROBustness in Network (Version 2.0.0)
2019
robustbase : Basic Robust Statistics (Version 0.99-6)
2006
robustlmm : Robust Linear Mixed Effects Models (Version 3.3-3)
2013
romic : R for High-Dimensional Molecular Data (Version 1.3.3)
2021
rpf : Response Probability Functions (Version 1.0.15)
2012
rrda : Ridge Redundancy Analysis for High-Dimensional Omics Data (Version 0.2.3)
2025
rrscale : Robust Re-Scaling to Better Recover Latent Effects in Data (Version 1.0)
2019
rtop : Interpolation of Data with Variable Spatial Support (Version 0.6-17)
2013
rtpcr : qPCR Data Analysis (Version 2.1.1)
2024
rwty : R We There Yet? Visualizing MCMC Convergence in Phylogenetics (Version 1.0.3)
2016
sValues : Measures of Sturdiness of Regression Coefficients (Version 0.1.8)
2015
saeTrafo : Transformations for Unit-Level Small Area Models (Version 1.0.6)
2022
salmonMSE : Management Strategy Evaluation for Salmon Species (Version 0.1.0)
2025
sampcompR : Comparing and Visualizing Differences Between Surveys (Version 0.3.2)
2024
santaR : Short Asynchronous Time-Series Analysis (Version 1.2.4)
2018
sbm : Stochastic Blockmodels (Version 0.4.7)
2020
scCATCH
Heterogeneity : (Version )
0
scGate
Data : (Version )
0
scITD : Single-Cell Interpretable Tensor Decomposition (Version 1.0.4)
2021
scRNAtools : Single Cell RNA Sequencing Data Analysis Tools (Version 1.0)
2018
scanstatistics : Space-Time Anomaly Detection using Scan Statistics (Version 1.1.2)
2016
scistreer : Maximum-Likelihood Perfect Phylogeny Inference at Scale (Version 1.2.0)
2022
scitb : Provides Some Useful Functions for Making Statistical Tables (Version 0.2.2)
2023
scorecardModelUtils : Credit Scorecard Modelling Utils (Version 0.0.1.0)
2018
sctransform : Variance Stabilizing Transformations for Single Cell UMI Data (Version 0.4.3)
2018
sdmpredictors : Species Distribution Modelling Predictor Datasets (Version 0.2.15)
2016
segclust2d : Bivariate Segmentation/Clustering Methods and Tools (Version 0.3.3)
2018
sensitivity
Measures : (Version )
0
sharpshootR : A Soil Survey Toolkit (Version 2.4)
2014
signed.backbones : Extract the Signed Backbones of Weighted Networks (Version 0.91.5)
2021
siland : Spatial Influence of Landscape (Version 3.0.2)
2017
simdata : Generate Simulated Datasets (Version 0.4.1)
2024
simmr : A Stable Isotope Mixing Model (Version 0.5.1.217)
2015
simrel : Simulation of Multivariate Linear Model Data (Version 2.1.0)
2014
sitepickR : Two-Level Sample Selection with Optimal Site Replacement (Version 0.0.1)
2022
snplinkage
Visualizations : (Version )
0
soc.ca : Specific Correspondence Analysis for the Social Sciences (Version 0.8.1)
2014
socialmixr : Social Mixing Matrices for Infectious Disease Modelling (Version 0.5.0)
2018
spNetwork : Spatial Analysis on Network (Version 0.4.4.7)
2021
sparklyr : R Interface to Apache Spark (Version 1.9.3)
2016
sparsesurv : Forecasting and Early Outbreak Detection for Sparse Count Data (Version 0.1.1)
2025
spatialwarnings : Spatial Early Warning Signals of Ecosystem Degradation (Version 3.1.1)
2017
specieschrom : The Species Chromatogram (Version 1.0.0)
2022
spectacles
Data : (Version )
0
spectralR
Polygons : (Version )
0
ssdtools : Species Sensitivity Distributions (Version 2.5.0)
2018
stability : Stability Analysis of Genotype by Environment Interaction (GEI) (Version 0.6.0)
2018
stepgbm
Modeling : (Version )
0
steprf : Stepwise Predictive Variable Selection for Random Forest (Version 1.0.2)
2021
structSSI
Structure : (Version )
0
superb : Summary Plots with Adjusted Error Bars (Version 1.0.1)
2021
survSens : Sensitivity Analysis with Time-to-Event Outcomes (Version 1.1.0)
2020
survout : Excel Conversion of R Surival Analysis Output (Version 0.1.0)
2022
svars : Data-Driven Identification of SVAR Models (Version 1.3.12)
2017
swag : Sparse Wrapper Algorithm (Version 0.1.0)
2020
sysid : System Identification in R (Version 1.0.4)
2017
tashu : Analysis and Prediction of Bicycle Rental Amount (Version 0.1.1)
2019
tcgaViz : Visualization Tool for the Cancer Genome Atlas Program (TCGA) (Version 1.0.2)
2022
tci : Target Controlled Infusion (TCI) (Version 0.2.1)
2021
tcplfit2 : A Concentration-Response Modeling Utility (Version 0.1.9)
2021
tcpl : ToxCast Data Analysis Pipeline (Version 3.3.1)
2016
telraamStats
Sensors : (Version )
0
tensorEVD
Matrices : (Version )
0
testarguments : Test (Multiple) Arguments of a User-Defined Prediction Algorithm (Version 0.0.1)
2021
testcorr : Testing Zero Correlation (Version 0.3.0)
2020
tetraclasse : Satisfaction Analysis using Tetraclasse Model and Llosa Matrix (Version 0.1.21)
2017
theftdlc : Analyse and Interpret Time Series Features (Version 0.2.1)
2024
tictactoe : Tic-Tac-Toe Game (Version 0.2.2)
2016
tidytext : Text Mining using 'dplyr', 'ggplot2', and Other Tidy Tools (Version 0.4.3)
2019
tldr
Reporting : (Version )
0
tmpm : Trauma Mortality Prediction Model (Version 1.0.3)
2016
toolmaRk : Tests for Same-Source of Toolmarks (Version 0.0.1)
2018
topolow : Force-Directed Euclidean Embedding of Dissimilarity Data (Version 2.0.1)
2025
tracerer : Tracer from R (Version 2.2.3)
2018
transforEmotion
Models : (Version )
0
treeDA : Tree-Based Discriminant Analysis (Version 0.0.5)
2017
treediff : Testing Differences Between Families of Trees (Version 0.2.1)
2023
treespace : Statistical Exploration of Landscapes of Phylogenetic Trees (Version 1.1.4.4)
2017
tsentiment : Fetching Tweet Data for Sentiment Analysis (Version 1.0.5)
2021
tsiR : An Implementation of the TSIR Model (Version 0.4.3)
2017
tstools : A Time Series Toolbox for Official Statistics (Version 0.4.4)
2018
tukeytrend : Tukeys Trend Test via Multiple Marginal Models (Version 0.7)
2017
tvm : Time Value of Money Functions (Version 0.5.2)
2014
updog : Flexible Genotyping for Polyploids (Version 2.1.6)
2018
vacalibration : Calibration of Computer-Coded Verbal Autopsy Algorithm (Version 2.0)
2025
vannstats : Simplified Statistical Procedures for Social Sciences (Version 1.6.1.08)
2021
vcfR : Manipulate and Visualize VCF Data (Version 1.15.0)
2016
visa : Vegetation Imaging Spectroscopy Analyzer (Version 1.0.0)
2021
viscomp : Visualize Multi-Component Interventions in Network Meta-Analysis (Version 1.0.0)
2023
vivainsights : Analyze and Visualize Data from 'Microsoft Viva Insights' (Version 0.7.1)
2022
vkR : Access to VK API via R (Version 0.2)
2016
wTO
Network : (Version )
0
warpMix
B-Spline : (Version )
0
weaana : Analysis the Weather Data (Version 0.3.0)
2021
webSDM : Including Known Interactions in Species Distribution Models (Version 1.1-5)
2022
welo : Weighted and Standard Elo Rates (Version 0.1.4)
2021
wevid
Evidence : (Version )
0
widyr : Widen, Process, then Re-Tidy Data (Version 0.1.5)
2017
wpa : Tools for Analysing and Visualising Viva Insights Data (Version 1.10.1)
2021
wppExplorer : Explorer of World Population Prospects (Version 2.3-4)
2013
wql : Exploring Water Quality Monitoring Data (Version 1.0.3)
2017
wqspt : Permutation Test for Weighted Quantile Sum Regression (Version 1.0.2)
2023
wxgenR : A Stochastic Weather Generator with Seasonality (Version 1.4.4)
2023
xsp : The Chi-Square Periodogram (Version 0.1.2)
2017
xxIRT : Item Response Theory and Computer-Based Testing in R (Version 2.1.2)
2016
yorkr : Analyze Cricket Performances Based on Data from Cricsheet (Version 0.0.42)
2016
zebu : Local Association Measures (Version 0.2.2.0)
2016
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RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN).
Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.
