Referenced by ⇅
Year
AdaptiveSparsity : Adaptive Sparsity Models (Version 1.6)
2013
ADMMnet : Regularized Model with Selecting the Number of Non-Zeros (Version 0.1.1)
2015
APML0 : Augmented and Penalized Minimization Method L0 (Version 0.10)
2017
BacArena : Modeling Framework for Cellular Communities in their
Environments (Version 1.8.2)
2015
bastah : Big Data Statistical Analysis for High-Dimensional Models (Version 1.0.7)
2016
BayesMRA : Bayesian Multi-Resolution Gaussian Process Approximations (Version 1.0.0)
2020
BCE : Bayesian Composition Estimator: Estimating Sample (Taxonomic)
Composition from Biomarker Data (Version 2.2.0)
2008
beam : Fast Bayesian Inference in Large Gaussian Graphical Models (Version 2.0.2)
2018
corpus : Text Corpus Analysis (Version 0.10.2)
2017
DCD : Differential Community Detection in Paired Biological Networks (Version 0.1.0)
2017
dcGOR : Analysis of Ontologies and Protein Domain Annotations (Version 1.0.6)
2014
diffusr : Network Diffusion Algorithms (Version 0.1.4)
2016
dnet : Integrative Analysis of Omics Data in Terms of Network,
Evolution and Ontology (Version 1.1.7)
2014
DOBAD : Analysis of Discretely Observed Linear
Birth-and-Death(-and-Immigration) Markov Chains (Version 1.0.6)
2011
DUBStepR : Correlation-Based Feature Selection for Single-Cell RNA
Sequencing Data (Version 1.2.0)
2021
epistasis : Detecting Epistatic Selection with Partially Observed Genotype
Data (Version 0.0.1-1)
2016
fastclime : A Fast Solver for Parameterized LP Problems, Constrained L1
Minimization Approach to Sparse Precision Matrix Estimation and
Dantzig Selector (Version 1.4.1.1)
2013
fastCorrDiff : Fast Differential Correlation Matrix Screening (Version 0.5)
2021
geonet : Intensity Estimation on Geometric Networks with Penalized
Splines (Version 0.7.3)
2021
GrassmannOptim : Grassmann Manifold Optimization (Version 2.0.1)
2009
gwer : Geographically Weighted Elliptical Regression (Version 3.0)
2019
HCV : Hierarchical Clustering from Vertex-Links (Version 1.2.0)
2022
hergm : Hierarchical Exponential-Family Random Graph Models (Version 4.1-10)
2010
HiCfeat : Multiple Logistic Regression for 3D Chromatin Domain Border
Analysis (Version 1.4)
2015
hierarchicalDS : Functions to Perform Hierarchical Analysis of Distance Sampling
Data (Version 3.0)
2012
hmlasso : Lasso with High Missing Rate (Version 0.0.1)
2019
htmcglm : Hypothesis Testing for McGLMs (Version 0.0.1)
2022
IFAA : Robust Inference for Absolute Abundance in Microbiome Analysis (Version 1.1.2)
2020
iilasso : Independently Interpretable Lasso (Version 0.0.2)
2018
ITRSelect : Variable Selection for Optimal Individualized Dynamic Treatment
Regime (Version 1.0-1)
2018
jlsm : Joint Latent Space Model for Social Networks with Multivariate
Attributes (Version 0.1.0)
2021
L1mstate : L1-Regularized Multi-State Models (Version 1.0.1)
2020
lmvar : Linear Regression with Non-Constant Variances (Version 1.5.2)
2017
LRQMM : Fitting Linear Quantile Regression Mixed Models with
Relationship Matrix (Version 1.2.3)
2019
MedSurvey : Linear Mediation Analysis for Complex Surveys Using Balanced
Repeated Replication (Version 1.1.1.3.0)
2019
metaMix : Bayesian Mixture Analysis for Metagenomic Community Profiling (Version 0.3)
2014
MoMPCA : Inference and Clustering for Mixture of Multinomial Principal
Component Analysis (Version 1.0.1)
2020
msaeOB : Optimum Benchmarking for Multivariate Small Area Estimation (Version 0.1.0)
2022
msaeRB : Ratio Benchmarking for Multivariate Small Area Estimation (Version 0.2.1)
2021
msda : Multi-Class Sparse Discriminant Analysis (Version 1.0.4)
2014
msgl : Multinomial Sparse Group Lasso (Version 2.3.9)
2013
mumm : Multiplicative Mixed Models using the Template Model Builder (Version 0.2.1)
2018
netchain : Inferring Causal Effects on Collective Outcomes under
Interference (Version 0.2.0)
2019
occTest : Characterizing and Filtering Species Occurrence Data (Version 0.1.1)
2022
penDvine : Flexible Pair-Copula Estimation in D-Vines using Bivariate
Penalized Splines (Version 0.2.4)
2012
pergola : Toolbox for Polyploid Genetic Data (Version 1.0)
2016
psr : Functions for Analyzing Performance Science Data (Version 0.1.0)
2021
ptf : Probit Tensor Factorization (Version 0.0.1)
2021
QPmin : Linearly Constrained Indefinite Quadratic Program Solver (Version 0.5-1)
2021
qut : Quantile Universal Threshold (Version 2.2)
2015
ragt2ridges : Ridge Estimation of Vector Auto-Regressive (VAR) Processes (Version 0.3.4)
2016
rbenvo : Built Environment Objects (Version 1.0.5)
2020
rcage : Regionalization of Multiscale Spatial Processes (Version 1.2)
2021
REREFACT : Reordering and/or Reflecting Factors for Simulation Studies with
Exploratory Factor Analysis (Version 1.0)
2016
rescue : Bootstrap Imputation for Single-Cell RNA-Seq Data (Version 1.0.3)
2020
RSarules : Random Sampling Association Rules from a Transaction Dataset (Version 1.0)
2016
rWind : Download, Edit and Include Wind and Sea Currents Data in
Ecological and Evolutionary Analysis (Version 1.1.7)
2016
scPOP : Metrics for Benchmarking scRNA-Seq Batch Correction (Version 0.1.0)
2021
scTEP : Single-Cell Trajectory Inference using Ensemble Pseudotimes (Version 0.1.0)
2022
sglOptim : Generic Sparse Group Lasso Solver (Version 1.3.8)
2013
sparsebnUtils : Utilities for Learning Sparse Bayesian Networks (Version 0.0.8)
2016
spatstat.core : Core Functionality of the "spatstat" Family (Version 2.4-4)
2021
spflow : Spatial Econometric Interaction Models (Version 0.1.0)
2021
sptm : SemiParametric Transformation Model Methods (Version 2019.11-25)
2014
SSN : Spatial Modeling on Stream Networks (Version 1.1.17)
2013
stylest : Estimating Speaker Style Distinctiveness (Version 0.2.0)
2018
surf : Survey-Based Gross Flows Estimation (Version 1.0.0)
2021
survtmle : Compute Targeted Minimum Loss-Based Estimates in Right-Censored
Survival Settings (Version 1.1.1)
2017
SwarmSVM : Ensemble Learning Algorithms Based on Support Vector Machines (Version 0.1-7)
2015
sybil : Efficient Constrained Based Modelling (Version 2.2.0)
2012
sybilcycleFreeFlux : Cycle-Free Flux Balance Analysis (CycleFreeFlux) (Version 2.0.2)
2014
tensorr : Sparse Tensors in R (Version 0.1.1)
2017
treemisc : Data Sets and Functions to Accompany "Tree-Based Methods for
Statistical Learning in R" (Version 0.0.1)
2022
ttTensor : Tensor-Train Decomposition (Version 1.0.1)
2019
vennLasso : Variable Selection for Heterogeneous Populations (Version 0.1.6)
2017
xtreg2way : Feasible Estimation of the Two-Way Fixed Effect Model (Version 1.0.0)
2020
DLSSM : Dynamic Logistic State Space Prediction Model (Version 1.1.0)
2022
Qardl : Quantile Autoregressive Distributed Lag Model (Version 0.1.1)
2022
glmmrMCML : Markov Chain Monte Carlo Maximum Likelihood for Generalised
Linear Mixed Models (Version 0.2.2)
2023
gsdensity : Density-Based Gene Set Specificity Evaluation (Version 0.1.2)
2023
HDPenReg : (Version )
0
morf : Modified Ordered Random Forest (Version 1.0.0)
2023
graphseg : Segmentation of Graph-Based Signals (Version 0.1.1)
2023
GSNA : Gene Set Networking Analysis Package (Version 0.1.4.2)
2024
WSGeometry : Geometric Tools Based on Balanced/Unbalanced Optimal Transport (Version 1.2.1)
2021
RAZIAD : Regression Analysis of Zero-Inflated and Zero-Altered(Hurdle) Data (Version 0.0.1)
2024
cate : High Dimensional Factor Analysis and Confounder Adjusted Testing and Estimation (Version 1.1.1)
2015
loe : Local Ordinal Embedding (Version 1.1)
2014
fwildclusterboot : Fast Wild Cluster Bootstrap Inference for Linear Models (Version 0.13.0)
2021
CARlasso : Conditional Autoregressive LASSO (Version 0.1.2)
2021
AROC : Covariate-Adjusted Receiver Operating Characteristic Curve Inference (Version 1.0-4)
2018
gfilmm : Generalized Fiducial Inference for Normal Linear Mixed Models (Version 2.0.5)
2020
BOSO : Bilevel Optimization Selector Operator (Version 1.0.4)
2021
diproperm : Conduct Direction-Projection-Permutation Tests and Display Plots (Version 0.2.0)
2020
fastMatMR : High-Performance Matrix Market File Operations (Version 1.2.5)
2023
BayesMassBal : Bayesian Data Reconciliation of Separation Processes (Version 1.1.0)
2020
digitalDLSorteR : Deconvolution of Bulk RNA-Seq Data Based on Deep Learning (Version 1.1.0)
2021
epoc : Endogenous Perturbation Analysis of Cancer (Version 0.2.6-1.1)
2011
CRF : Conditional Random Fields (Version 0.4-3)
2014
Corbi : Collection of Rudimentary Bioinformatics Tools (Version 0.6-2)
2016
BBSSL : Bayesian Bootstrap Spike-and-Slab LASSO (Version 0.1.0)
2021
diffudist : Diffusion Distance for Complex Networks (Version 1.0.1)
2021
edmcr : Euclidean Distance Matrix Completion Tools (Version 0.2.0)
2017
sdpt3r : Semi-Definite Quadratic Linear Programming Solver (Version 0.3)
2017
DWLasso : Degree Weighted Lasso (Version 1.1)
2017
erfe : Fits Expectile Regression for Panel Fixed Effect Model (Version 0.0.1)
2022
dimRed : A Framework for Dimensionality Reduction (Version 0.2.6)
2017
FeatureHashing : Creates a Model Matrix via Feature Hashing with a Formula Interface (Version 0.9.2)
2014
LncPath : Identifying the Pathways Regulated by LncRNA Sets of Interest (Version 1.1)
2016
ondisc : Fast, Universal, and Intuitive Computing on Large-Scale Single-Cell Data (Version 1.0.0)
2021
picasso : Pathwise Calibrated Sparse Shooting Algorithm (Version 1.3.1)
2014
sparsevar : Sparse VAR/VECM Models Estimation (Version 0.1.0)
2016
spectralGraphTopology : Learning Graphs from Data via Spectral Constraints (Version 0.2.3)
2019
cjoint : AMCE Estimator for Conjoint Experiments (Version 2.1.1)
2014
clarabel : Interior Point Conic Optimization Solver (Version 0.10.0)
2023
classGraph : Construct Graphs of S4 Class Hierarchies (Version 0.7-6)
2007
cleanNLP : A Tidy Data Model for Natural Language Processing (Version 3.1.0)
2016
clevr : Clustering and Link Prediction Evaluation in R (Version 0.1.2)
2020
climwin : Climate Window Analysis (Version 1.2.3)
2015
clubSandwich : Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections (Version 0.5.11)
2016
countland : Analysis of Biological Count Data, Especially from Single-Cell RNA-Seq (Version 0.1.2)
2022
countsplit : Splitting a Count Matrix into Independent Folds (Version 4.0.0)
2023
covsim : VITA, IG and PLSIM Simulation for Given Covariance and Marginals (Version 1.1.0)
2020
coxme : Mixed Effects Cox Models (Version 2.2-22)
2009
cplm : Compound Poisson Linear Models (Version 0.7-12.1)
2011
ACV : Optimal Out-of-Sample Forecast Evaluation and Testing under Stationarity (Version 1.0.2)
2022
ADDT : Analysis of Accelerated Destructive Degradation Test Data (Version 2.0)
2014
ADMM : Algorithms using Alternating Direction Method of Multipliers (Version 0.3.3)
2017
ADSIHT : Adaptive Double Sparse Iterative Hard Thresholding (Version 0.1.0)
2024
AGHmatrix : Relationship Matrices for Diploid and Autopolyploid Species (Version 2.1.4)
2018
AGPRIS : AGricultural PRoductivity in Space (Version 2.0)
2020
AHM : Additive Heredity Model: Method for the Mixture-of-Mixtures Experiments (Version 1.0.1)
2019
AICcmodavg : Model Selection and Multimodel Inference Based on (Q)AIC(c) (Version 2.3-4)
2009
ARGOS : Automatic Regression for Governing Equations (ARGOS) (Version 0.1.1)
2023
ASRgenomics : Complementary Genomic Functions (Version 1.1.4)
2022
AVGAS : A Variable Selection using Genetic Algorithms (Version 0.1.0)
2023
AgreementInterval : Agreement Interval of Two Measurement Methods (Version 0.1.1)
2018
ArCo : Artificial Counterfactual Package (Version 0.3-1)
2017
BANAM : Bayesian Analysis of the Network Autocorrelation Model (Version 0.2.2)
2024
BCA1SG : Block Coordinate Ascent with One-Step Generalized Rosen Algorithm (Version 0.1.0)
2019
BCEA : Bayesian Cost Effectiveness Analysis (Version 2.4.7)
2012
BFF : Bayes Factor Functions (Version 4.2.1)
2022
BGVAR : Bayesian Global Vector Autoregressions (Version 2.5.8)
2020
BGmisc : An R Package for Extended Behavior Genetics Analysis (Version 1.3.3)
2020
BLPestimatoR : Performs a BLP Demand Estimation (Version 0.3.4)
2017
BOSSreg : Best Orthogonalized Subset Selection (BOSS) (Version 0.2.0)
2019
BSW : Fitting a Log-Binomial Model using the Bekhit-Schöpe-Wagenpfeil (BSW) Algorithm (Version 0.1.1)
2020
BTLLasso : Modelling Heterogeneity in Paired Comparison Data (Version 0.1-13)
2015
BTYD : Implementing BTYD Models with the Log Sum Exp Patch (Version 2.4.3)
2012
BayesFactor : Computation of Bayes Factors for Common Designs (Version 0.9.12-4.7)
2012
BayesGP : Efficient Implementation of Gaussian Process in Bayesian Hierarchical Models (Version 0.1.3)
2024
BayesLN : Bayesian Inference for Log-Normal Data (Version 0.2.10)
2020
BayesNSGP : Bayesian Analysis of Non-Stationary Gaussian Process Models (Version 0.1.2)
2019
BayesS5 : Bayesian Variable Selection Using Simplified Shotgun Stochastic Search with Screening (S5) (Version 1.41)
2017
BayesSUR : Bayesian Seemingly Unrelated Regression Models in High-Dimensional Settings (Version 2.2-1)
2019
BayesSampling : Bayes Linear Estimators for Finite Population (Version 1.1.0)
2020
BayesfMRI : Spatial Bayesian Methods for Task Functional MRI Studies (Version 0.10.1)
2023
BayesianFactorZoo : Bayesian Solutions for the Factor Zoo: We Just Ran Two Quadrillion Models (Version 0.0.0.3)
2023
BayesianTools : General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics (Version 0.1.8)
2017
Bayesiantreg : Bayesian t Regression for Modeling Mean and Scale Parameters (Version 1.0.1)
2022
BeSS : Best Subset Selection in Linear, Logistic and CoxPH Models (Version 2.0.4)
2017
Bergm : Bayesian Exponential Random Graph Models (Version 5.0.7)
2009
BeviMed : Bayesian Evaluation of Variant Involvement in Mendelian Disease (Version 5.10)
2016
BiDAG : Bayesian Inference for Directed Acyclic Graphs (Version 2.1.4)
2017
BigQuic : Big Quadratic Inverse Covariance Estimation (Version 1.1-13)
2016
BinNonNor : Data Generation with Binary and Continuous Non-Normal Components (Version 1.5.3)
2014
BinNor : Simultaneous Generation of Multivariate Binary and Normal Variates (Version 2.3.3)
2011
BinOrdNonNor : Concurrent Generation of Binary, Ordinal and Continuous Data (Version 1.5.2)
2015
BlockCov : Estimation of Large Block Covariance Matrices (Version 0.1.1)
2018
BlockMissingData : Integrating Multi-Source Block-Wise Missing Data in Model Selection (Version 0.1.0)
2023
Boptbd : Bayesian Optimal Block Designs (Version 1.0.5)
2020
Brobdingnag : Very Large Numbers in R (Version 1.2-9)
2007
CAESAR.Suite : CAESAR: a Cross-Technology and Cross-Resolution Framework for Spatial Omics Annotation (Version 0.2.0)
2024
CAMML : Cell-Typing using Variance Adjusted Mahalanobis Distances with Multi-Labeling (Version 1.0.0)
2021
CDatanet : Econometrics of Network Data (Version 2.2.1)
2021
CEGO : Combinatorial Efficient Global Optimization (Version 2.4.4)
2015
CIAAWconsensus : Isotope Ratio Meta-Analysis (Version 1.3)
2016
CLA : Critical Line Algorithm in Pure R (Version 0.96-3)
2018
CLVTools : Tools for Customer Lifetime Value Estimation (Version 0.11.2)
2020
CMShiny : Interactive Document for Working with Confusion Matrix (Version 0.1.0)
2019
CNVScope : A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization (Version 3.7.2)
2018
COMBO : Correcting Misclassified Binary Outcomes in Association Studies (Version 1.2.0)
2023
COMMA : Correcting Misclassified Mediation Analysis (Version 1.1.1)
2024
CR2 : Compute Cluster Robust Standard Errors with Degrees of Freedom Adjustments (Version 0.2.1)
2022
CRMetrics : Cell Ranger Output Filtering and Metrics Visualization (Version 0.3.2)
2022
CRTgeeDR : Doubly Robust Inverse Probability Weighted Augmented GEE Estimator (Version 2.0.1)
2016
CRTspat : Workflow for Cluster Randomised Trials with Spillover (Version 1.3.2)
2023
CVST : Fast Cross-Validation via Sequential Testing (Version 0.2-3)
2012
CVXR : Disciplined Convex Optimization (Version 1.0-15)
2017
CalibrationCurves : Calibration Performance (Version 2.0.4)
2022
CatEncoders : Encoders for Categorical Variables (Version 0.1.1)
2016
CausalMBSTS : MBSTS Models for Causal Inference and Forecasting (Version 0.1.1)
2020
ChainLadder : Statistical Methods and Models for Claims Reserving in General Insurance (Version 0.2.20)
2007
ChoiceModelR : Choice Modeling in R (Version 1.3.1)
2012
ClimMobTools : API Client for the 'ClimMob' Platform (Version 1.4)
2019
CliquePercolation : Clique Percolation for Networks (Version 0.4.0)
2019
ClustAssess : Tools for Assessing Clustering (Version 1.0.0)
2021
ClusterGVis : One-Step to Cluster and Visualize Gene Expression Data (Version 0.1.2)
2025
CoSMoS : Complete Stochastic Modelling Solution (Version 2.1.0)
2019
CodataGS : Genomic Prediction Using SNP Codata (Version 1.43)
2019
CollocInfer : Collocation Inference for Dynamic Systems (Version 1.0.5)
2010
CommKern : Network-Based Communities and Kernel Machine Methods (Version 1.0.1)
2022
CompMix : A Comprehensive Toolkit for Environmental Mixtures Analysis ('CompMix') (Version 0.1.0)
2024
CompareCausalNetworks : Interface to Diverse Estimation Methods of Causal Networks (Version 0.2.6.2)
2015
Compositional : Compositional Data Analysis (Version 7.3)
2016
CopulaInference : Estimation and Goodness-of-Fit of Copula-Based Models with Arbitrary Distributions (Version 0.5.0)
2023
Countr : Flexible Univariate Count Models Based on Renewal Processes (Version 3.5.8)
2016
CovCombR : Combine Partial Covariance / Relationship Matrices (Version 1.0)
2020
CovTools : Statistical Tools for Covariance Analysis (Version 0.5.4)
2017
Crossover : Analysis and Search of Crossover Designs (Version 0.1-22)
2014
Cyclops : Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis (Version 3.5.0)
2016
CytoSimplex : Simplex Visualization of Cell Fate Similarity in Single-Cell Data (Version 0.1.1)
2023
DAISIE : Dynamical Assembly of Islands by Speciation, Immigration and Extinction (Version 4.5.0)
2015
DAMOCLES : Dynamic Assembly Model of Colonization, Local Extinction and Speciation (Version 2.3)
2014
DCLEAR : Distance Based Cell Lineage Reconstruction (Version 1.0.13)
2021
DDD : Diversity-Dependent Diversification (Version 5.2.2)
2012
DDL : Doubly Debiased Lasso (DDL) (Version 1.0.2)
2022
DDPstar : Density Regression via Dirichlet Process Mixtures of Normal Structured Additive Regression Models (Version 1.0-1)
2025
DHARMa : Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models (Version 0.4.7)
2016
DICEM : Directness and Intensity of Conflict Expression (Version 0.1.0)
2024
DIFM : Dynamic ICAR Spatiotemporal Factor Models (Version 1.0)
2024
DImodelsMulti : Fit Multivariate Diversity-Interactions Models with Repeated Measures (Version 1.1.1)
2024
DNAmixturesLite : Statistical Inference for Mixed Traces of DNA (Lite-Version) (Version 0.0-1)
2023
DNMF : Discriminant Non-Negative Matrix Factorization (Version 1.4.2)
2015
DPQmpfr : DPQ (Density, Probability, Quantile) Distribution Computations using MPFR (Version 0.3-3)
2020
DR.SC : Joint Dimension Reduction and Spatial Clustering (Version 3.4)
2021
DRR : Dimensionality Reduction via Regression (Version 0.0.4)
2016
DRaWR : Discriminative Random Walk with Restart (Version 1.0.3)
2016
DSAM : Data Splitting Algorithms for Model Developments (Version 1.0.2)
2023
DTRlearn2 : Statistical Learning Methods for Optimizing Dynamic Treatment Regimes (Version 1.1)
2019
DWDLargeR : Fast Algorithms for Large Scale Generalized Distance Weighted Discrimination (Version 0.2-0)
2018
DWLS : Gene Expression Deconvolution Using Dampened Weighted Least Squares (Version 0.1.0)
2022
DYNATE : Dynamic Aggregation Testing (Version 0.1)
2022
DemoKin : Estimate Population Kin Distribution (Version 1.0.3)
2023
Dire : Linear Regressions with a Latent Outcome Variable (Version 2.2.0)
2021
DisaggregateTS : High-Dimensional Temporal Disaggregation (Version 3.0.1)
2022
DoE.MIParray : Creation of Arrays by Mixed Integer Programming (Version 1.0-1)
2017
DoubleCone : Test Against Parametric Regression Function (Version 1.1)
2013
DrBats : Data Representation: Bayesian Approach That's Sparse (Version 0.1.6)
2016
ECOSolveR : Embedded Conic Solver in R (Version 0.5.5)
2015
EFAfactors : Determining the Number of Factors in Exploratory Factor Analysis (Version 1.2.1)
2024
EFDR : Wavelet-Based Enhanced FDR for Detecting Signals from Complete or Incomplete Spatially Aggregated Data (Version 1.3)
2015
EGAnet : Exploratory Graph Analysis – a Framework for Estimating the Number of Dimensions in Multivariate Data using Network Psychometrics (Version 2.2.0)
2019
EIX : Explain Interactions in 'XGBoost' (Version 1.2.0)
2019
EMCluster : EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution (Version 0.2-17)
2012
EMC2 : Bayesian Hierarchical Analysis of Cognitive Models of Choice (Version 3.0.0)
2024
EMMREML : Fitting Mixed Models with Known Covariance Structures (Version 3.1)
2014
EMgaussian : Expectation-Maximization Algorithm for Multivariate Normal (Gaussian) with Missing Data (Version 0.2.1)
2024
ETRep : Analysis of Elliptical Tubes Under the Relative Curvature Condition (Version 1.1.0)
2024
EconGeo : Computing Key Indicators of the Spatial Distribution of Economic Activities (Version 2.0)
2023
EdSurvey : Analysis of NCES Education Survey and Assessment Data (Version 4.0.7)
2017
ElliptCopulas : Inference of Elliptical Distributions and Copulas (Version 0.1.4.1)
2022
EmbedSOM : Fast Embedding Guided by Self-Organizing Map (Version 2.2)
2019
Epi : Statistical Analysis in Epidemiology (Version 2.59)
2005
EventPredInCure : Event Prediction Including Cured Population (Version 1.0)
2024
ExtrPatt : Spatial Dependencies and Indices for Extremes (Version 0.1-4)
2023
FAS : Factor-Augmented Sparse Regression Tuning-Free Testing (Version 1.0.0)
2024
FAVAR : Bayesian Analysis of a FAVAR Model (Version 0.1.3)
2022
FDboost : Boosting Functional Regression Models (Version 1.1-2)
2014
FEprovideR : Fixed Effects Logistic Model with High-Dimensional Parameters (Version 1.1)
2019
FKSUM : Fast Kernel Sums (Version 1.0.1)
2019
FLASHMM : Fast and Scalable Single Cell Differential Expression Analysis using Mixed-Effects Models (Version 1.0.0)
2025
FRK : Fixed Rank Kriging (Version 2.3.1)
2017
FSInteract : Fast Searches for Interactions (Version 0.1.2)
2015
FSTpackage : Unified Sequence-Based Association Tests Allowing for Multiple Functional Annotation Scores (Version 0.1)
2017
FSelectorRcpp : 'Rcpp' Implementation of 'FSelector' Entropy-Based Feature Selection Algorithms with a Sparse Matrix Support (Version 0.3.13)
2017
FactorHet : Estimate Heterogeneous Effects in Factorial Experiments Using Grouping and Sparsity (Version 1.0.0)
2025
FastImputation : Learn from Training Data then Quickly Fill in Missing Data (Version 2.2.1)
2012
FieldSimR : Simulation of Plot Errors and Phenotypes in Plant Breeding Field Trials (Version 1.4.0)
2022
FinNet : Quickly Build and Manipulate Financial Networks (Version 0.2.1)
2023
FindIt : Finding Heterogeneous Treatment Effects (Version 1.2.0)
2012
FlexGAM : Generalized Additive Models with Flexible Response Functions (Version 0.7.2)
2018
FlexRL : A Flexible Model for Record Linkage (Version 0.1.0)
2024
FoReco : Forecast Reconciliation (Version 1.0.0)
2020
ForIT : Functions to Estimate Tree Volume and Phytomass in the Italian Forest Inventory 2005 (Version 2.4.0)
2014
ForecastComb : Forecast Combination Methods (Version 1.3.1)
2017
ForestTools : Tools for Analyzing Remote Sensing Forest Data (Version 1.0.3)
2017
FuncNN : Functional Neural Networks (Version 1.0)
2020
GALLO : Genomic Annotation in Livestock for Positional Candidate LOci (Version 1.5)
2020
GDILM.SIR : Inference for Infectious Disease Transmission in SIR Framework (Version 1.2.1)
2024
GDINA : The Generalized DINA Model Framework (Version 2.9.4)
2016
GENLIB : Genealogical Data Analysis (Version 1.1.10)
2014
GENMETA : Implements Generalized Meta-Analysis Using Iterated Reweighted Least Squares Algorithm (Version 0.2.0)
2018
GFD : Tests for General Factorial Designs (Version 0.3.3)
2015
GFDmcv : General Hypothesis Testing Problems for Multivariate Coefficients of Variation (Version 0.1.0)
2023
GFisher : Generalized Fisher's Combination Tests Under Dependence (Version 0.2.0)
2021
GGMnonreg : Non-Regularized Gaussian Graphical Models (Version 1.0.0)
2021
GHap : Genome-Wide Haplotyping (Version 3.0.0)
2016
GLMpack : Data and Code to Accompany Generalized Linear Models, 2nd Edition (Version 0.1.0)
2019
GMMAT : Generalized Linear Mixed Model Association Tests (Version 1.4.2)
2023
GPUmatrix : Basic Linear Algebra with GPU (Version 1.0.2)
2023
GPvam : Maximum Likelihood Estimation of Multiple Membership Mixed Models Used in Value-Added Modeling (Version 3.2-0)
2012
GPvecchia : Scalable Gaussian-Process Approximations (Version 0.1.7)
2019
GSD : Graph Signal Decomposition (Version 1.0.0)
2024
GTEs : Group Technical Effects (Version 1.0.0)
2025
GUniFrac : Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis (Version 1.8)
2012
GWRLASSO : A Hybrid Model for Spatial Prediction Through Local Regression (Version 0.1.0)
2023
GWSDAT : GroundWater Spatiotemporal Data Analysis Tool (GWSDAT) (Version 3.2.1)
2017
GaussSuppression : Tabular Data Suppression using Gaussian Elimination (Version 0.9.5)
2021
GeDS : Geometrically Designed Spline Regression (Version 0.2.6)
2017
GenOrd : Simulation of Discrete Random Variables with Given Correlation Matrix and Marginal Distributions (Version 1.4.0)
2012
GeneNMF : Non-Negative Matrix Factorization for Single-Cell Omics (Version 0.6.2)
2024
GeneralizedWendland : Fully Parameterized Generalized Wendland Covariance Function (Version 0.6.0)
2022
GenoScan : A Genome-Wide Scan Statistic Framework for Whole-Genome Sequence Data Analysis (Version 0.1)
2018
GeoAdjust : Accounting for Random Displacements of True GPS Coordinates of Data (Version 2.0.0)
2023
GeomArchetypal : Finds the Geometrical Archetypal Analysis of a Data Frame (Version 1.0.3)
2024
GeomComb : (Geometric) Forecast Combination Methods (Version 1.0)
2016
GhostKnockoff : The Knockoff Inference Using Summary Statistics (Version 0.1.0)
2021
GillespieSSA2 : Gillespie's Stochastic Simulation Algorithm for Impatient People (Version 0.3.0)
2019
GlarmaVarSel : Variable Selection in Sparse GLARMA Models (Version 1.0)
2021
GrabSVG : Granularity-Based Spatially Variable Genes Identifications (Version 0.0.2)
2023
HCD : Hierarchical Community Detection by Recursive Partitioning (Version 1.0)
2019
HDCI : High Dimensional Confidence Interval Based on Lasso and Bootstrap (Version 1.0-2)
2017
HLMdiag : Diagnostic Tools for Hierarchical (Multilevel) Linear Models (Version 0.5.0)
2011
HMTL : Heterogeneous Multi-Task Feature Learning (Version 0.1.0)
2023
HSAR : Hierarchical Spatial Autoregressive Model (Version 0.6.0)
2015
HSDiC : Homogeneity and Sparsity Detection Incorporating Prior Constraint Information (Version 0.1)
2018
HSAUR : A Handbook of Statistical Analyses Using R (1st Edition) (Version 1.3-10)
2006
HSAUR2 : A Handbook of Statistical Analyses Using R (2nd Edition) (Version 1.1-20)
2009
HelpersMG : Tools for Environmental Analyses, Ecotoxicology and Various R Functions (Version 6.4)
2015
HeteroGGM : Gaussian Graphical Model-Based Heterogeneity Analysis (Version 1.0.1)
2021
HhP : Hierarchical Heterogeneity Analysis via Penalization (Version 1.0.0)
2022
HiGarrote : Nonnegative Garrote Method Incorporating Hierarchical Relationships (Version 1.0.2)
2024
Hmsc : Hierarchical Model of Species Communities (Version 3.0-13)
2019
HonestDiD : Robust Inference in Difference-in-Differences and Event Study Designs (Version 0.2.6)
2024
HyperG : Hypergraphs in R (Version 1.0.0)
2021
ICBioMark : Data-Driven Design of Targeted Gene Panels for Estimating Immunotherapy Biomarkers (Version 0.1.4)
2021
ICglm : Information Criteria for Generalized Linear Regression (Version 0.1.0)
2021
IDE : Integro-Difference Equation Spatio-Temporal Models (Version 0.3.1)
2018
ILSM : Analyze Interconnection Structure of Multilayer Interaction Networks (Version 1.0.3.2)
2024
INFOSET : Computing a New Informative Distribution Set of Asset Returns (Version 4.1)
2024
INLABMA : Bayesian Model Averaging with INLA (Version 0.1-12)
2013
INLAjoint : Multivariate Joint Modeling for Longitudinal and Time-to-Event Outcomes with 'INLA' (Version 24.3.25)
2023
INLAspacetime : Spatial and Spatio-Temporal Models using 'INLA' (Version 0.1.11)
2023
IPCAPS : Iterative Pruning to Capture Population Structure (Version 1.1.8)
2018
IPV : Item Pool Visualization (Version 1.0.0)
2020
InteractionPoweR : Power Analyses for Interaction Effects in Cross-Sectional Regressions (Version 0.2.2)
2022
IsingFit : Fitting Ising Models Using the ELasso Method (Version 0.4)
2014
JANE : Just Another Latent Space Network Clustering Algorithm (Version 0.2.1)
2024
JICO : Joint and Individual Regression (Version 0.1)
2023
KFAS : Kalman Filter and Smoother for Exponential Family State Space Models (Version 1.5.1)
2009
Karen : Kalman Reaction Networks (Version 1.0)
2022
KinMixLite : Inference About Relationships from DNA Mixtures (Version 2.1.1)
2023
KnockoffScreen : Whole-Genome Sequencing Data Analysis via Knockoff Statistics (Version 0.3.0)
2020
L0Learn : Fast Algorithms for Best Subset Selection (Version 2.1.0)
2018
L2E : Robust Structured Regression via the L2 Criterion (Version 2.0)
2022
LDABiplots : Biplot Graphical Interface for LDA Models (Version 0.1.2)
2022
LKT : Logistic Knowledge Tracing (Version 1.7.0)
2021
LMERConvenienceFunctions : Model Selection and Post-Hoc Analysis for (G)LMER Models (Version 3.0)
2010
LMMsolver : Linear Mixed Model Solver (Version 1.0.9)
2021
LMMstar : Repeated Measurement Models for Discrete Times (Version 1.1.0)
2021
LPmerge : Merging Linkage Maps by Linear Programming (Version 1.7)
2013
LRMF3 : Low Rank Matrix Factorization S3 Objects (Version 0.1.0)
2022
LSX : Semi-Supervised Algorithm for Document Scaling (Version 1.4.2)
2020
LaMa : Fast Numerical Maximum Likelihood Estimation for Latent Markov Models (Version 2.0.3)
2024
LassoBacktracking : Modelling Interactions in High-Dimensional Data with Backtracking (Version 1.1)
2016
LiblineaR : Linear Predictive Models Based on the LIBLINEAR C/C++ Library (Version 2.10-24)
2010
LocKer : Locally Sparse Estimator of Generalized Varying Coefficient Model for Asynchronous Longitudinal Data (Version 1.1)
2022
MADMMplasso : Multi Variate Multi Response ADMM with Interaction Effects (Version 1.0.0)
2025
MAGEE : Mixed Model Association Test for GEne-Environment Interaction (Version 1.4.2)
2023
MANOVA.RM : Resampling-Based Analysis of Multivariate Data and Repeated Measures Designs (Version 0.5.4)
2016
MAP : Multimodal Automated Phenotyping (Version 1.0.0)
2019
MARVEL : Revealing Splicing Dynamics at Single-Cell Resolution (Version 1.4.0)
2021
MBC : Multivariate Bias Correction of Climate Model Outputs (Version 0.10-7)
2016
MCARtest : Optimal Nonparametric Testing of Missing Completely at Random (Version 1.2.2)
2022
MCMCglmm : MCMC Generalised Linear Mixed Models (Version 2.36)
2009
MCMCprecision : Precision of Discrete Parameters in Transdimensional MCMC (Version 0.4.0)
2017
MDPtoolbox : Markov Decision Processes Toolbox (Version 4.0.3)
2012
MECfda : Scalar-on-Function Regression with Measurement Error Correction (Version 0.2.0)
2024
MEGENA : Multiscale Clustering of Geometrical Network (Version 1.3.7)
2016
MESS : Miscellaneous Esoteric Statistical Scripts (Version 0.5.12)
2012
MFPCA : Multivariate Functional Principal Component Analysis for Data Observed on Different Dimensional Domains (Version 1.3-10)
2016
MGDrivE2 : Mosquito Gene Drive Explorer 2 (Version 2.1.0)
2020
MIIPW : IPW and Mean Score Methods for Time-Course Missing Data (Version 0.1.1)
2021
MIIVsem : Model Implied Instrumental Variable (MIIV) Estimation of Structural Equation Models (Version 0.5.8)
2015
MJMbamlss : Multivariate Joint Models with 'bamlss' (Version 0.1.0)
2023
MLGL : Multi-Layer Group-Lasso (Version 1.0.0)
2018
MLMusingR : Practical Multilevel Modeling (Version 0.4.0)
2022
MM4LMM : Inference of Linear Mixed Models Through MM Algorithm (Version 3.0.3)
2018
MMeM : Multivariate Mixed Effects Model (Version 0.1.1)
2019
MOCHA : Modeling for Single-Cell Open Chromatin Analysis (Version 1.1.0)
2022
MRFcov : Markov Random Fields with Additional Covariates (Version 1.0.39)
2018
MRTSampleSizeBinary : Sample Size Calculator for MRT with Binary Outcomes (Version 0.1.2)
2021
MSCA : Clustering of Multiple Censored Time-to-Event Endpoints (Version 1.0)
2025
MSclust : Multiple-Scaled Clustering (Version 1.0.4)
2022
MTAR : Multi-Trait Analysis of Rare-Variant Association Study (Version 0.1.1)
2020
MachineShop : Machine Learning Models and Tools (Version 3.8.0)
2018
MargCond : Joint Marginal-Conditional Model (Version 1.0.0)
2018
MatrixExtra : Extra Methods for Sparse Matrices (Version 0.1.15)
2021
MatrixModels : Modelling with Sparse and Dense Matrices (Version 0.5-3)
2010
MendelianRandomization : Mendelian Randomization Package (Version 0.10.0)
2016
MetaHD : A Multivariate Meta-Analysis Model for High-Dimensional Metabolomics Data (Version 0.1.3)
2024
MethodCompare : Evaluating Bias and Precision in Method Comparison Studies (Version 1.1.0)
2016
MetricGraph : Random Fields on Metric Graphs (Version 1.4.1)
2023
MiRKAT : Microbiome Regression-Based Kernel Association Tests (Version 1.2.3)
2017
MicrobiomeStat : Statistical Methods for Microbiome Compositional Data (Version 1.2)
2021
MixedPsy : Statistical Tools for the Analysis of Psychophysical Data (Version 1.2.0)
2017
MixfMRI : Mixture fMRI Clustering Analysis (Version 0.1-4)
2018
MoBPS : Modular Breeding Program Simulator (Version 1.6.64)
2020
MoTBFs : Learning Hybrid Bayesian Networks using Mixtures of Truncated Basis Functions (Version 1.4.1)
2015
ModelMatrixModel : Create Model Matrix and Save the Transforming Parameters (Version 0.1.0)
2021
MonteCarloSEM : Monte Carlo Data Simulation Package (Version 0.0.8)
2020
Morpho : Calculations and Visualisations Related to Geometric Morphometrics (Version 2.12)
2013
MuChPoint : Multiple Change Point (Version 0.6.3)
2018
MuMIn : Multi-Model Inference (Version 1.48.4)
2010
MultiGlarmaVarSel : Variable Selection in Sparse Multivariate GLARMA Models (Version 1.0)
2022
MultiKink : Estimation and Inference for Multi-Kink Quantile Regression (Version 0.2.0)
2020
MultiOrd : Generation of Multivariate Ordinal Variates (Version 2.4.3)
2012
MultiStatM : Multivariate Statistical Methods (Version 2.0.0)
2022
MultiVarMI : Multiple Imputation for Multivariate Data (Version 1.0)
2018
MultiVarSel : Variable Selection in a Multivariate Linear Model (Version 1.1.3)
2017
N2R : Fast and Scalable Approximate k-Nearest Neighbor Search Methods using 'N2' Library (Version 1.0.3)
2020
NAIR : Network Analysis of Immune Repertoire (Version 1.0.4)
2023
NBtsVarSel : Variable Selection in a Specific Regression Time Series of Counts (Version 1.0)
2023
NCmisc : Miscellaneous Functions for Creating Adaptive Functions and Scripts (Version 1.2.0)
2013
NSAE : Nonstationary Small Area Estimation (Version 0.4.0)
2021
NVCSSL : Nonparametric Varying Coefficient Spike-and-Slab Lasso (Version 2.0)
2020
NegBinBetaBinreg : Negative Binomial and Beta Binomial Bayesian Regression Models (Version 1.0)
2016
NetMix : Dynamic Mixed-Membership Network Regression Model (Version 0.2.0.2)
2019
NetworkComparisonTest : Statistical Comparison of Two Networks Based on Several Invariance Measures (Version 2.2.2)
2016
NetworkDistance : Distance Measures for Networks (Version 0.3.4)
2017
NetworkRiskMeasures : Risk Measures for (Financial) Networks (Version 0.1.4)
2017
NonProbEst : Estimation in Nonprobability Sampling (Version 0.2.4)
2019
ODT : Optimal Decision Trees Algorithm (Version 1.0.0)
2024
ORKM : The Online Regularized K-Means Clustering Algorithm (Version 0.8.0.0)
2022
OpenMx : Extended Structural Equation Modelling (Version 2.21.13)
2015
OptimModel : Perform Nonlinear Regression Using 'optim' as the Optimization Engine (Version 2.0-1)
2024
OptimalDesign : A Toolbox for Computing Efficient Designs of Experiments (Version 1.0.1)
2016
OrdCD : Ordinal Causal Discovery (Version 1.1.2)
2022
OrdNor : Concurrent Generation of Ordinal and Normal Data with Given Correlation Matrix and Marginal Distributions (Version 2.2.3)
2013
PBImisc : A Set of Datasets Used in My Classes or in the Book 'Modele Liniowe i Mieszane w R, Wraz z Przykladami w Analizie Danych' (Version 1.0)
2011
PCADSC : Tools for Principal Component Analysis-Based Data Structure Comparisons (Version 0.8.0)
2017
PCGII : Partial Correlation Graph with Information Incorporation (Version 1.1.2)
2024
PCovR : Principal Covariates Regression (Version 2.7.2)
2013
PEIP : Geophysical Inverse Theory and Optimization (Version 2.2-5)
2012
PEPBVS : Bayesian Variable Selection using Power-Expected-Posterior Prior (Version 2.1)
2023
PERMANOVA : Multivariate Analysis of Variance Based on Distances and Permutations (Version 0.2.0)
2021
PFIM : Population Fisher Information Matrix (Version 6.1)
2022
PJFM : Variational Inference for High-Dimensional Joint Frailty Model (Version 0.1.0)
2024
PLNmodels : Poisson Lognormal Models (Version 1.2.0)
2019
PLmixed : Estimate (Generalized) Linear Mixed Models with Factor Structures (Version 0.1.7)
2017
POINT : Protein Structure Guided Local Test (Version 1.3)
2019
PQLseq : Efficient Mixed Model Analysis of Count Data in Large-Scale Genomic Sequencing Studies (Version 1.2.1)
2018
PRECAST : Embedding and Clustering with Alignment for Spatial Datasets (Version 1.6.5)
2022
PRIMAL : Parametric Simplex Method for Sparse Learning (Version 1.0.2)
2019
PRIMME : Eigenvalues and Singular Values and Vectors from Large Matrices (Version 3.2-6)
2017
PRISMA : Protocol Inspection and State Machine Analysis (Version 0.2-7)
2012
PROreg : Patient Reported Outcomes Regression Analysis (Version 1.3)
2017
PRSPGx : Construct PGx PRS (Version 0.3.0)
2021
PUGMM : Parsimonious Ultrametric Gaussian Mixture Models (Version 0.1.0)
2024
PUlasso : High-Dimensional Variable Selection with Presence-Only Data (Version 3.2.5)
2017
PanCanVarSel : Pan-Cancer Variable Selection (Version 0.0.3)
2019
PanelMatch : Matching Methods for Causal Inference with Time-Series Cross-Sectional Data (Version 3.0.0)
2020
PartCensReg : Estimation and Diagnostics for Partially Linear Censored Regression Models Based on Heavy-Tailed Distributions (Version 1.39)
2018
PartialNetwork : Estimating Peer Effects Using Partial Network Data (Version 1.0.4)
2023
PatientLevelPrediction : Develop Clinical Prediction Models Using the Common Data Model (Version 6.4.0)
2025
PenCoxFrail : Regularization in Cox Frailty Models (Version 2.0.0)
2016
PenIC : Semiparametric Regression Analysis of Interval-Censored Data using Penalized Splines (Version 1.0.0)
2020
PerFit : Person Fit (Version 1.4.6)
2014
Petersen : Estimators for Two-Sample Capture-Recapture Studies (Version 2025.3.1)
2023
PhylogeneticEM : Automatic Shift Detection using a Phylogenetic EM (Version 1.8.0)
2017
PlackettLuce : Plackett-Luce Models for Rankings (Version 0.4.3)
2017
Platypus : Single-Cell Immune Repertoire and Gene Expression Analysis (Version 3.6.0)
2021
PoisBinNonNor : Data Generation with Poisson, Binary and Continuous Components (Version 1.3.3)
2015
PoisBinOrd : Data Generation with Poisson, Binary and Ordinal Components (Version 1.4.3)
2015
PoisBinOrdNonNor : Generation of Up to Four Different Types of Variables (Version 1.5.3)
2015
PoisBinOrdNor : Data Generation with Poisson, Binary, Ordinal and Normal Components (Version 1.6.3)
2015
PoisNonNor : Simultaneous Generation of Count and Continuous Data (Version 1.6.3)
2015
PoisNor : Simultaneous Generation of Multivariate Data with Poisson and Normal Marginals (Version 1.3.3)
2014
PrevMap : Geostatistical Modelling of Spatially Referenced Prevalence Data (Version 1.5.4)
2014
ProFAST : Probabilistic Factor Analysis for Spatially-Aware Dimension Reduction (Version 1.4)
2023
ProbitSpatial : Probit with Spatial Dependence, SAR, SEM and SARAR Models (Version 1.1)
2016
ProcMod : Informative Procrustean Matrix Correlation (Version 1.0.8)
2019
QRM : Provides R-Language Code to Examine Quantitative Risk Management Concepts (Version 0.4-31)
2012
QZ : Generalized Eigenvalues and QZ Decomposition (Version 0.2-3)
2013
Qtools : Utilities for Quantiles (Version 1.5.9)
2016
Qval : The Q-Matrix Validation Methods Framework (Version 1.2.0)
2024
R.matlab : Read and Write MAT Files and Call MATLAB from Within R (Version 3.7.0)
2005
R2MLwiN : Running 'MLwiN' from Within R (Version 0.8-9)
2012
RAINBOWR : Genome-Wide Association Study with SNP-Set Methods (Version 0.1.35)
2019
RCBR : Random Coefficient Binary Response Estimation (Version 0.6.2)
2020
RCTS : Clustering Time Series While Resisting Outliers (Version 0.2.4)
2022
REBayes : Empirical Bayes Estimation and Inference (Version 2.56)
2013
REN : Regularization Ensemble for Robust Portfolio Optimization (Version 0.1.0)
2024
RESET : Reconstruction Set Test (Version 1.0.0)
2023
REndo : Fitting Linear Models with Endogenous Regressors using Latent Instrumental Variables (Version 2.4.10)
2015
RGE : Response from Genotype to Environment (Version 1.0)
2021
RGENERATEPREC : Tools to Generate Daily-Precipitation Time Series (Version 1.2.9)
2015
RGF : Regularized Greedy Forest (Version 1.1.1)
2018
RHPCBenchmark : Benchmarks for High-Performance Computing Environments (Version 0.1.0)
2017
RKEEL : Using 'KEEL' in R Code (Version 1.3.4)
2016
RMLPCA : Maximum Likelihood Principal Component Analysis (Version 0.0.1)
2020
RMThreshold : Signal-Noise Separation in Random Matrices by using Eigenvalue Spectrum Analysis (Version 1.1)
2016
RNGforGPD : Random Number Generation for Generalized Poisson Distribution (Version 1.1.0)
2018
RNewsflow : Tools for Comparing Text Messages Across Time and Media (Version 1.2.8)
2016
ROCnReg : ROC Curve Inference with and without Covariates (Version 1.0-9)
2020
ROI.plugin.ecos : 'ECOS' Plugin for the 'R' Optimization Infrastructure (Version 1.0-2)
2016
ROI.plugin.osqp : 'osqp' Plugin for the 'R' Optimization Infrastructure (Version 1.0-2)
2020
RPANDA : Phylogenetic ANalyses of DiversificAtion (Version 2.4)
2014
RPatternJoin : String Similarity Joins for Hamming and Levenshtein Distances (Version 1.0.0)
2024
RRPP : Linear Model Evaluation with Randomized Residuals in a Permutation Procedure (Version 2.1.2)
2018
RSC : Robust and Sparse Correlation Matrix (Version 2.0.4)
2020
RSSL : Implementations of Semi-Supervised Learning Approaches for Classification (Version 0.9.7)
2016
RSiena : Siena - Simulation Investigation for Empirical Network Analysis (Version 1.4.7)
2009
RSpectra : Solvers for Large-Scale Eigenvalue and SVD Problems (Version 0.16-2)
2016
RTMB : 'R' Bindings for 'TMB' (Version 1.7)
2023
RaceID : Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data (Version 0.3.9)
2018
Rcplex : R Interface to CPLEX (Version 0.3-6)
2008
RcppArmadillo : 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library (Version 14.2.3-1)
2010
RcppBlaze : 'Rcpp' Integration for the 'Blaze' High-Performance 'C++' Math Library (Version 1.0.1)
2017
RcppEigen : 'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library (Version 0.3.4.0.2)
2011
RcppML : Rcpp Machine Learning Library (Version 0.3.7)
2021
Rcsdp : R Interface to the CSDP Semidefinite Programming Library (Version 0.1.57.5)
2009
ReDaMoR : Relational Data Modeler (Version 0.8.2)
2020
ReMFPCA : Regularized Multivariate Functional Principal Component Analysis (Version 1.0.0)
2023
RealVAMS : Multivariate VAM Fitting (Version 0.4-6)
2014
Rediscover : Identify Mutually Exclusive Mutations (Version 0.3.2)
2021
RegSDC : Information Preserving Regression-Based Tools for Statistical Disclosure Control (Version 1.0.0)
2019
Renvlp : Computing Envelope Estimators (Version 3.4.5)
2018
ResIN : Response Item Networks (Version 2.0.0)
2023
ResourceSelection : Resource Selection (Probability) Functions for Use-Availability Data (Version 0.3-6)
2011
RestoreNet : Random-Effects Stochastic Reaction Networks (Version 1.0.1)
2022
RevEcoR : Reverse Ecology Analysis on Microbiome (Version 0.99.3)
2015
Riemann : Learning with Data on Riemannian Manifolds (Version 0.1.4)
2020
RiskMap : Geo-Statistical Modeling of Spatially Referenced Data (Version 0.1.0)
2024
Rlinsolve : Iterative Solvers for (Sparse) Linear System of Equations (Version 0.3.2)
2017
Rmodule : Automated Markov Chain Monte Carlo for Arbitrarily Structured Correlation Matrices (Version 1.0)
2023
Rnmr1D : Perform the Complete Processing of a Set of Proton Nuclear Magnetic Resonance Spectra (Version 1.3.2)
2018
RobKF : Innovative and/or Additive Outlier Robust Kalman Filtering (Version 1.0.2)
2020
RobustIV : Robust Instrumental Variable Methods in Linear Models (Version 0.2.5)
2022
Rphylopars : Phylogenetic Comparative Tools for Missing Data and Within-Species Variation (Version 0.3.10)
2015
Rsurrogate : Robust Estimation of the Proportion of Treatment Effect Explained by Surrogate Marker Information (Version 3.2)
2015
Rsymphony : SYMPHONY in R (Version 0.1-33)
2010
Rwclust : Random Walk Clustering on Weighted Graphs (Version 0.1.0)
2022
Ryacas : R Interface to the 'Yacas' Computer Algebra System (Version 1.1.5)
2007
Ryacas0 : Legacy 'Ryacas' (Interface to 'Yacas' Computer Algebra System) (Version 0.4.4)
2019
SALES : The (Adaptive) Elastic Net and Lasso Penalized Sparse Asymmetric Least Squares (SALES) and Coupled Sparse Asymmetric Least Squares (COSALES) using Coordinate Descent and Proximal Gradient Algorithms (Version 1.0.2)
2016
SAR : Smart Adaptive Recommendations (Version 1.0.3)
2019
SAVER : Single-Cell RNA-Seq Gene Expression Recovery (Version 1.1.2)
2018
SBMTrees : Sequential Imputation with Bayesian Trees Mixed-Effects Models for Longitudinal Data (Version 1.2)
2024
SC.MEB : Spatial Clustering with Hidden Markov Random Field using Empirical Bayes (Version 1.1)
2021
SCGLR : Supervised Component Generalized Linear Regression (Version 3.0)
2013
SCIBER : Single-Cell Integrator and Batch Effect Remover (Version 0.2.2)
2022
SCIntRuler : Guiding the Integration of Multiple Single-Cell RNA-Seq Datasets (Version 0.99.6)
2024
SCORNET : Semi-Supervised Calibration of Risk with Noisy Event Times (Version 0.1.1)
2020
SCORPION : Single Cell Oriented Reconstruction of PANDA Individual Optimized Networks (Version 1.0.2)
2022
SCORPIUS : Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data (Version 1.0.9)
2017
SCdeconR : Deconvolution of Bulk RNA-Seq Data using Single-Cell RNA-Seq Data as Reference (Version 1.0.0)
2024
SCpubr : Generate Publication Ready Visualizations of Single Cell Transcriptomics Data (Version 2.0.2)
2022
SDPDmod : Spatial Dynamic Panel Data Modeling (Version 0.0.5)
2022
SEAGLE : Scalable Exact Algorithm for Large-Scale Set-Based Gene-Environment Interaction Tests (Version 1.0.1)
2021
SEset : Computing Statistically-Equivalent Path Models (Version 1.0.1)
2022
SID : Structural Intervention Distance (Version 1.1)
2015
SIMle : Estimation and Inference for General Time Series Regression (Version 0.1.0)
2023
SIMplyBee : 'AlphaSimR' Extension for Simulating Honeybee Populations and Breeding Programmes (Version 0.4.1)
2022
SIRE : Finding Feedback Effects in SEM and Testing for Their Significance (Version 1.1.0)
2018
SISIR : Select Intervals Suited for Functional Regression (Version 0.2.3)
2016
SKAT : SNP-Set (Sequence) Kernel Association Test (Version 2.2.5)
2012
SLBDD : Statistical Learning for Big Dependent Data (Version 0.0.4)
2021
SLOPE : Sorted L1 Penalized Estimation (Version 0.5.2)
2015
SLTCA : Scalable and Robust Latent Trajectory Class Analysis (Version 0.1.0)
2020
SMNCensReg : Fitting Univariate Censored Regression Model Under the Family of Scale Mixture of Normal Distributions (Version 3.1)
2013
SOR : Estimation using Sequential Offsetted Regression (Version 0.23.1)
2014
SPAS : Stratified-Petersen Analysis System (Version 2025.2.1)
2019
SPCompute : Compute Power or Sample Size for GWAS with Covariate Effect (Version 1.0.3)
2022
SPECK : Receptor Abundance Estimation using Reduced Rank Reconstruction and Clustered Thresholding (Version 1.0.0)
2022
SPSP : Selection by Partitioning the Solution Paths (Version 0.2.0)
2021
SRTsim : Simulator for Spatially Resolved Transcriptomics (Version 0.99.7)
2022
SSBtools : Statistics Norway's Miscellaneous Tools (Version 1.7.0)
2016
SSN2 : Spatial Modeling on Stream Networks (Version 0.2.1)
2023
STB : Simultaneous Tolerance Bounds (Version 0.6.5)
2016
STREAK : Receptor Abundance Estimation using Feature Selection and Gene Set Scoring (Version 1.0.0)
2022
STPGA : Selection of Training Populations by Genetic Algorithm (Version 5.2.1)
2014
SUMMER : Small-Area-Estimation Unit/Area Models and Methods for Estimation in R (Version 2.0.0)
2017
ScreenClean : Screen and clean variable selection procedures (Version 1.0.1)
2012
SeuratObject : Data Structures for Single Cell Data (Version 5.0.2)
2021
Seurat : Tools for Single Cell Genomics (Version 5.2.1)
2017
SiFINeT : Single Cell Feature Identification with Network Topology (Version 1.13)
2025
Sie2nts : Sieve Methods for Non-Stationary Time Series (Version 0.1.0)
2023
SightabilityModel : Wildlife Sightability Modeling (Version 1.5.5)
2012
Signac : Analysis of Single-Cell Chromatin Data (Version 1.14.0)
2020
SignacX : Cell Type Identification and Discovery from Single Cell Gene Expression Data (Version 2.2.5)
2021
SimCorrMix : Simulation of Correlated Data with Multiple Variable Types Including Continuous and Count Mixture Distributions (Version 0.1.1)
2018
SimInf : A Framework for Data-Driven Stochastic Disease Spread Simulations (Version 9.8.1)
2016
SimMultiCorrData : Simulation of Correlated Data with Multiple Variable Types (Version 0.2.2)
2017
SimSurvNMarker : Simulate Survival Time and Markers (Version 0.1.3)
2020
SimplyAgree : Flexible and Robust Agreement and Reliability Analyses (Version 0.2.1)
2021
SmCCNet : Sparse Multiple Canonical Correlation Network Analysis Tool (Version 2.0.3)
2019
SmallCountRounding : Small Count Rounding of Tabular Data (Version 1.2.0)
2018
SmoothTensor : A Collection of Smooth Tensor Estimation Methods (Version 0.1.1)
2021
SoupX : Single Cell mRNA Soup eXterminator (Version 1.6.2)
2020
SpaCCI : Spatially Aware Cell-Cell Interaction Analysis (Version 1.0.3)
2024
SpaCOAP : High-Dimensional Spatial Covariate-Augmented Overdispersed Poisson Factor Model (Version 1.2)
2024
SpaceTimeBSS : Blind Source Separation for Multivariate Spatio-Temporal Data (Version 0.4-0)
2022
SparseChol : Sparse Matrix C++ Classes Including Sparse Cholesky LDL Decomposition of Symmetric Matrices (Version 0.3.2)
2022
SpatialDDLS : Deconvolution of Spatial Transcriptomics Data Based on Neural Networks (Version 1.0.3)
2023
SpatialGEV : Fit Spatial Generalized Extreme Value Models (Version 1.0.1)
2022
SpiceFP : Sparse Method to Identify Joint Effects of Functional Predictors (Version 0.1.2)
2021
SplitKnockoff : Split Knockoffs for Structural Sparsity (Version 2.1)
2021
StableEstim : Estimate the Four Parameters of Stable Laws using Different Methods (Version 2.3)
2014
StanHeaders : C++ Header Files for Stan (Version 2.32.10)
2015
SteppedPower : Power Calculation for Stepped Wedge Designs (Version 0.3.5)
2021
StratifiedSampling : Different Methods for Stratified Sampling (Version 0.4.2)
2021
SubgrpID : Patient Subgroup Identification for Clinical Drug Development (Version 0.12)
2017
SuperCell : Simplification of scRNA-Seq Data by Merging Together Similar Cells (Version 1.0.1)
2024
SystemicR : Monitoring Systemic Risk (Version 0.1.0)
2020
TAD : Realize the Trait Abundance Distribution (Version 1.0.0)
2024
TAG : Transformed Additive Gaussian Processes (Version 0.5.1)
2019
TANDEM : A Two-Stage Approach to Maximize Interpretability of Drug Response Models Based on Multiple Molecular Data Types (Version 1.0.3)
2016
TCA : Tensor Composition Analysis (Version 1.2.1)
2019
TFisher : Optimal Thresholding Fisher's P-Value Combination Method (Version 0.2.0)
2017
THREC : Tree Height Response Calibration for Swedish Forests (Version 1.0.0)
2023
TKCat : Tailored Knowledge Catalog (Version 1.1.11)
2021
TMB : Template Model Builder: A General Random Effect Tool Inspired by 'ADMB' (Version 1.9.16)
2015
TML : Tropical Geometry Tools for Machine Learning (Version 2.3.0)
2023
TOHM : Testing One Hypothesis Multiple Times (Version 1.4)
2019
TPEA : A Novel Topology-Based Pathway Enrichment Analysis Approach (Version 3.1.0)
2016
TRMF : Temporally Regularized Matrix Factorization (Version 0.2.1)
2021
TSLA : Tree-Guided Rare Feature Selection and Logic Aggregation (Version 0.1.1)
2025
TSdisaggregation : High-Dimensional Temporal Disaggregation (Version 2.0.0)
2022
TSsmoothing : Trend Estimation of Univariate and Bivariate Time Series with Controlled Smoothness (Version 0.1.0)
2019
TTCA : Transcript Time Course Analysis (Version 0.1.1)
2016
TULIP : A Toolbox for Linear Discriminant Analysis with Penalties (Version 1.0.2)
2019
TangledFeatures : Feature Selection in Highly Correlated Spaces (Version 0.1.1)
2023
TensorTools : Multilinear Algebra (Version 1.0.0)
2024
TextForecast : Regression Analysis and Forecasting Using Textual Data from a Time-Varying Dictionary (Version 0.1.3)
2019
TooManyCellsR : An R Wrapper for 'TooManyCells' (Version 0.1.1.0)
2019
TopKSignal : A Convex Optimization Tool for Signal Reconstruction from Multiple Ranked Lists (Version 1.0)
2024
TopicScore : The Topic SCORE Algorithm to Fit Topic Models (Version 0.0.1)
2019
TraceAssist : Nonparametric Trace Regression via Sign Series Representation (Version 0.1.0)
2021
TransTGGM : Transfer Learning for Tensor Graphical Models (Version 1.0.0)
2022
TropFishR : Tropical Fisheries Analysis (Version 1.6.5)
2016
VAJointSurv : Variational Approximation for Joint Survival and Marker Models (Version 0.1.1)
2022
VAM : Variance-Adjusted Mahalanobis (Version 1.1.0)
2021
VARcpDetectOnline : Sequential Change Point Detection for High-Dimensional VAR Models (Version 0.2.0)
2025
VBJM : Variational Inference for Joint Model (Version 0.1.0)
2023
VCA : Variance Component Analysis (Version 1.5.1)
2015
VDPO : Working with and Analyzing Functional Data of Varying Lengths (Version 0.1.0)
2024
VeccTMVN : Multivariate Normal Probabilities using Vecchia Approximation (Version 1.2.1)
2024
ViSiElse : A Visual Tool for Behavior Analysis over Time (Version 1.2.2)
2016
Vicus : Exploiting Local Structures to Improve Network-Based Analysis of Biological Data (Version 0.99.0)
2023
WGScan : A Genome-Wide Scan Statistic Framework for Whole-Genome Sequence Data Analysis (Version 0.1)
2019
WLogit : Variable Selection in High-Dimensional Logistic Regression Models using a Whitening Approach (Version 2.1)
2022
WaveSampling : Weakly Associated Vectors (WAVE) Sampling (Version 0.1.4)
2019
WaverideR : Extracting Signals from Wavelet Spectra (Version 0.3.2)
2023
WeMix : Weighted Mixed-Effects Models Using Multilevel Pseudo Maximum Likelihood Estimation (Version 4.0.3)
2018
WeightSVM : Subject Weighted Support Vector Machines (Version 1.7-16)
2020
WoodburyMatrix : Fast Matrix Operations via the Woodbury Matrix Identity (Version 0.0.3)
2020
WpProj : Linear p-Wasserstein Projections (Version 0.2.3)
2024
ZIPFA : Zero Inflated Poisson Factor Analysis (Version 0.8.1)
2019
abclass : Angle-Based Large-Margin Classifiers (Version 0.4.0)
2022
abess : Fast Best Subset Selection (Version 0.4.9)
2021
abnormality : Measure a Subject's Abnormality with Respect to a Reference Population (Version 0.1.0)
2018
abn : Modelling Multivariate Data with Additive Bayesian Networks (Version 3.1.1)
2011
absorber : Variable Selection in Nonparametric Models using B-Splines (Version 1.0)
2024
abtest : Bayesian A/B Testing (Version 1.0.1)
2019
adapt4pv : Adaptive Approaches for Signal Detection in Pharmacovigilance (Version 0.2-3)
2020
adaptMCMC : Implementation of a Generic Adaptive Monte Carlo Markov Chain Sampler (Version 1.5)
2011
adaptsmoFMRI : Adaptive Smoothing of FMRI Data (Version 1.2)
2012
addhaz : Binomial and Multinomial Additive Hazard Models (Version 0.5)
2016
adelie : Group Lasso and Elastic Net Solver for Generalized Linear Models (Version 1.0.7)
2024
adjclust : Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix (Version 0.6.10)
2017
afex : Analysis of Factorial Experiments (Version 1.4-1)
2012
aghq : Adaptive Gauss Hermite Quadrature for Bayesian Inference (Version 0.4.1)
2021
agriutilities : Utilities for Data Analysis in Agriculture (Version 1.2.1)
2023
ahMLE : Methods for the Additive Hazard Model (Version 1.20.1)
2021
ahaz : Regularization for Semiparametric Additive Hazards Regression (Version 1.15.1)
2011
alakazam : Immunoglobulin Clonal Lineage and Diversity Analysis (Version 1.3.0)
2016
albatross : PARAFAC Analysis of Fluorescence Excitation-Emission Matrices (Version 0.3-8)
2020
alkahest : Pre-Processing XY Data from Experimental Methods (Version 1.3.0)
2022
alphastable : Inference for Stable Distribution (Version 0.2.1)
2018
altmeta : Alternative Meta-Analysis Methods (Version 4.2)
2016
animalEKF : Extended Kalman Filters for Animal Movement (Version 1.2)
2020
anndata : 'anndata' for R (Version 0.7.5.6)
2020
anticlust : Subset Partitioning via Anticlustering (Version 0.8.9-1)
2020
apcluster : Affinity Propagation Clustering (Version 1.4.13)
2010
apdesign : An Implementation of the Additive Polynomial Design Matrix (Version 1.0.0)
2016
aphylo : Statistical Inference and Prediction of Annotations in Phylogenetic Trees (Version 0.3-4)
2022
applicable : A Compilation of Applicability Domain Methods (Version 0.1.1)
2020
ar.matrix : Simulate Auto Regressive Data from Precision Matricies (Version 0.1.0)
2018
arc : Association Rule Classification (Version 1.4)
2016
archetypal : Finds the Archetypal Analysis of a Data Frame (Version 1.3.1)
2019
argo : Accurate Estimation of Influenza Epidemics using Google Search Data (Version 3.0.2)
2019
aricode : Efficient Computations of Standard Clustering Comparison Measures (Version 1.0.3)
2018
arm : Data Analysis Using Regression and Multilevel/Hierarchical Models (Version 1.14-4)
2007
arules : Mining Association Rules and Frequent Itemsets (Version 1.7-9)
2005
arulesCBA : Classification Based on Association Rules (Version 1.2.7)
2016
ashr : Methods for Adaptive Shrinkage, using Empirical Bayes (Version 2.2-63)
2016
asnipe : Animal Social Network Inference and Permutations for Ecologists (Version 1.1.17)
2016
aster2 : Aster Models (Version 0.3-2)
2010
atime : Asymptotic Timing (Version 2025.1.21)
2022
audubon : Japanese Text Processing Tools (Version 0.5.2)
2022
autoMFA : Algorithms for Automatically Fitting MFA Models (Version 1.0.0)
2021
autostats : Auto Stats (Version 0.4.1)
2021
bWGR : Bayesian Whole-Genome Regression (Version 2.2.13)
2015
backbone : Extracts the Backbone from Graphs (Version 2.1.4)
2019
bage : Bayesian Estimation and Forecasting of Age-Specific Rates (Version 0.9.0)
2024
bamlss : Bayesian Additive Models for Location, Scale, and Shape (and Beyond) (Version 1.2-5)
2017
bamm : Species Distribution Models as a Function of Biotic, Abiotic and Movement Factors (BAM) (Version 0.5.0)
2022
basefun : Infrastructure for Computing with Basis Functions (Version 1.2-2)
2016
bayesWatch : Bayesian Change-Point Detection for Process Monitoring with Fault Detection (Version 0.1.3)
2023
bbknnR : Perform Batch Balanced KNN in R (Version 1.1.1)
2022
bbmle : Tools for General Maximum Likelihood Estimation (Version 1.0.25.1)
2007
bc3net : Gene Regulatory Network Inference with Bc3net (Version 1.0.4)
2012
benchmarkme : Crowd Sourced System Benchmarks (Version 1.0.8)
2016
bestridge : A Comprehensive R Package for Best Subset Selection (Version 1.0.7)
2021
bgsmtr : Bayesian Group Sparse Multi-Task Regression (Version 0.7)
2016
biClassify : Binary Classification Using Extensions of Discriminant Analysis (Version 1.3)
2020
bibliometrix : Comprehensive Science Mapping Analysis (Version 4.3.2)
2016
biblioverlap : Document-Level Matching Between Bibliographic Datasets (Version 1.0.2)
2023
bigDM : Scalable Bayesian Disease Mapping Models for High-Dimensional Data (Version 0.5.5)
2022
bigQF : Quadratic Forms in Large Matrices (Version 1.6)
2021
bigergm : Fit, Simulate, and Diagnose Hierarchical Exponential-Family Models for Big Networks (Version 1.2.4)
2024
biglasso : Extending Lasso Model Fitting to Big Data (Version 1.6.1)
2016
bigsparser : Sparse Matrix Format with Data on Disk (Version 0.7.3)
2020
bigsnpr : Analysis of Massive SNP Arrays (Version 1.12.18)
2017
bioregion : Comparison of Bioregionalisation Methods (Version 1.2.0)
2023
biospear : Biomarker Selection in Penalized Regression Models (Version 1.0.2)
2017
birankr : Ranking Nodes in Bipartite and Weighted Networks (Version 1.0.1)
2020
blapsr : Bayesian Inference with Laplace Approximations and P-Splines (Version 0.6.1)
2020
blatent : Bayesian Latent Variable Models (Version 0.1.2)
2020
blavaan : Bayesian Latent Variable Analysis (Version 0.5-8)
2015
blockForest : Block Forests: Random Forests for Blocks of Clinical and Omics Covariate Data (Version 0.2.6)
2018
blockmodeling : Generalized and Classical Blockmodeling of Valued Networks (Version 1.1.5)
2008
bolasso : Model Consistent Lasso Estimation Through the Bootstrap (Version 0.3.0)
2022
bonsai : Model Wrappers for Tree-Based Models (Version 0.3.2)
2022
bootnet : Bootstrap Methods for Various Network Estimation Routines (Version 1.6)
2015
brainGraph : Graph Theory Analysis of Brain MRI Data (Version 3.1.0)
2015
brant : Test for Parallel Regression Assumption (Version 0.3-0)
2017
bravo : Bayesian Screening and Variable Selection (Version 3.2.2)
2020
brglm2 : Bias Reduction in Generalized Linear Models (Version 0.9.2)
2017
bridgesampling : Bridge Sampling for Marginal Likelihoods and Bayes Factors (Version 1.1-2)
2017
brms : Bayesian Regression Models using 'Stan' (Version 2.22.0)
2015
brokenstick : Broken Stick Model for Irregular Longitudinal Data (Version 2.5.0)
2020
brolgar : Browse Over Longitudinal Data Graphically and Analytically in R (Version 1.0.1)
2020
broom.mixed : Tidying Methods for Mixed Models (Version 0.2.9.6)
2018
bspcov : Bayesian Sparse Estimation of a Covariance Matrix (Version 1.0.1)
2024
bsreg : Bayesian Spatial Regression Models (Version 0.0.2)
2021
btergm : Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood (Version 1.10.12)
2015
bvartools : Bayesian Inference of Vector Autoregressive and Error Correction Models (Version 0.2.4)
2019
cAIC4 : Conditional Akaike Information Criterion for 'lme4' and 'nlme' (Version 1.0)
2014
cSEM : Composite-Based Structural Equation Modeling (Version 0.6.0)
2020
cape : Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice (Version 3.1.2)
2013
car : Companion to Applied Regression (Version 3.1-3)
2001
caracas : Computer Algebra (Version 2.1.1)
2020
caret : Classification and Regression Training (Version 7.0-1)
2007
cases : Stratified Evaluation of Subgroup Classification Accuracy (Version 0.2.0)
2023
castor : Efficient Phylogenetics on Large Trees (Version 1.8.3)
2017
catch : Covariate-Adjusted Tensor Classification in High-Dimensions (Version 1.0.1)
2018
causalOT : Optimal Transport Weights for Causal Inference (Version 1.0.2)
2022
cccd : Class Cover Catch Digraphs (Version 1.6)
2010
cdid : The Chained Difference-in-Differences (Version 0.1.1)
2025
cellpypes : Cell Type Pipes for Single-Cell RNA Sequencing Data (Version 0.3.0)
2022
cencrne : Consistent Estimation of the Number of Communities via Regularized Network Embedding (Version 1.0.0)
2023
centiserve : Find Graph Centrality Indices (Version 1.0.0)
2017
cepreader : Read 'CEP' and Legacy 'CANOCO' Files (Version 1.2-2)
2018
cgaim : Constrained Groupwise Additive Index Models (Version 1.0.1)
2022
cgam : Constrained Generalized Additive Model (Version 1.23)
2014
chinese.misc : Miscellaneous Tools for Chinese Text Mining and More (Version 0.2.3)
2017
chords : Estimation in Respondent Driven Samples (Version 0.95.4)
2012
ciccr : Causal Inference in Case-Control and Case-Population Studies (Version 0.3.0)
2020
clustTMB : Spatio-Temporal Finite Mixture Model using 'TMB' (Version 0.1.0)
2024
cluster : "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al. (Version 2.1.8)
1999
clustur : Clustering (Version 0.1.1)
2024
clustvarsel : Variable Selection for Gaussian Model-Based Clustering (Version 2.3.4)
2006
cmR : Analysis of Cardiac Magnetic Resonance Images (Version 1.1)
2021
cmaRs : Implementation of the Conic Multivariate Adaptive Regression Splines in R (Version 0.1.3)
2021
cmfrec : Collective Matrix Factorization for Recommender Systems (Version 3.5.1-3)
2020
cna : Causal Modeling with Coincidence Analysis (Version 3.6.2)
2014
coalescentMCMC : MCMC Algorithms for the Coalescent (Version 0.4-4)
2012
cobs : Constrained B-Splines (Sparse Matrix Based) (Version 1.3-9)
2002
coca : Cluster-of-Clusters Analysis (Version 1.1.0)
2020
coda.base : A Basic Set of Functions for Compositional Data Analysis (Version 0.5.5)
2017
codingMatrices : Alternative Factor Coding Matrices for Linear Model Formulae (Version 0.4.0)
2016
coglasso : Collaborative Graphical Lasso - Multi-Omics Network Reconstruction (Version 1.0.2)
2024
colorrepel : Repel Visually Similar Colors for Colorblind Users in Various Plots (Version 0.4.1)
2024
colourvision : Colour Vision Models (Version 2.1.0)
2016
comato : Analysis of Concept Maps and Concept Landscapes (Version 1.1)
2014
combat.enigma : Fit and Apply ComBat, LMM, or Prescaling Harmonization for ENIGMA and Other Multisite MRI Data (Version 1.1.1)
2023
combinIT : A Combined Interaction Test for Unreplicated Two-Way Tables (Version 2.0.0)
2022
complexplus : Functions of Complex or Real Variable (Version 2.1)
2016
conText : 'a la Carte' on Text (ConText) Embedding Regression (Version 1.4.3)
2021
conflicted : An Alternative Conflict Resolution Strategy (Version 1.2.0)
2018
conleyreg : Estimations using Conley Standard Errors (Version 0.1.7)
2021
conquer : Convolution-Type Smoothed Quantile Regression (Version 1.3.3)
2020
conos : Clustering on Network of Samples (Version 1.5.2)
2021
control : A Control Systems Toolbox (Version 0.2.5)
2017
coop : Co-Operation: Fast Covariance, Correlation, and Cosine Similarity Operations (Version 0.6-3)
2016
cope : Coverage Probability Excursion (CoPE) Sets (Version 0.2.3)
2015
copula : Multivariate Dependence with Copulas (Version 1.1-5)
2005
corTest : Robust Tests for Equal Correlation (Version 1.0.7)
2018
corpustools : Managing, Querying and Analyzing Tokenized Text (Version 0.5.1)
2017
corrMCT : Correlated Weighted Hochberg (Version 0.2.0)
2024
cotram : Count Transformation Models (Version 0.5-2)
2019
countSTAR : Flexible Modeling of Count Data (Version 1.0.2)
2023
corrgram : Plot a Correlogram (Version 1.14)
2006
cpr : Control Polygon Reduction (Version 0.4.0)
2017
crisp : Fits a Model that Partitions the Covariate Space into Blocks in a Data- Adaptive Way (Version 1.0.0)
2017
crosstalkr : Analysis of Graph-Structured Data with a Focus on Protein-Protein Interaction Networks (Version 1.0.5)
2021
crqa : Unidimensional and Multidimensional Methods for Recurrence Quantification Analysis (Version 2.0.6)
2013
crumble : Flexible and General Mediation Analysis Using Riesz Representers (Version 0.1.2)
2024
csmpv : Biomarker Confirmation, Selection, Modelling, Prediction, and Validation (Version 1.0.3)
2024
csurvey : Constrained Regression for Survey Data (Version 1.10)
2021
cthreshER : Continuous Threshold Expectile Regression (Version 1.1.0)
2016
ctmcmove : Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains (Version 1.2.10)
2015
ctrialsgov : Query Data from U.S. National Library of Medicine's Clinical Trials Database (Version 0.2.5)
2021
ctsem : Continuous Time Structural Equation Modelling (Version 3.10.2)
2015
ctsemOMX : Continuous Time SEM - 'OpenMx' Based Functions (Version 1.0.6)
2020
curephEM : NPMLE for Logistic-Cox Cure-Rate Model (Version 0.3.0)
2020
cvCovEst : Cross-Validated Covariance Matrix Estimation (Version 1.2.2)
2021
cvwrapr : Tools for Cross Validation (Version 1.0)
2021
cxr : A Toolbox for Modelling Species Coexistence in R (Version 1.1.1)
2021
cytominer : Methods for Image-Based Cell Profiling (Version 0.2.2)
2017
dataPreparation : Automated Data Preparation (Version 1.1.1)
2017
dbacf : Autocovariance Estimation via Difference-Based Methods (Version 0.2.8)
2023
dbcsp : Distance-Based Common Spatial Patterns (Version 0.0.2.1)
2021
dclone : Data Cloning and MCMC Tools for Maximum Likelihood Methods (Version 2.3-2)
2009
dcsvm : Density Convoluted Support Vector Machines (Version 0.0.1)
2025
ddml : Double/Debiased Machine Learning (Version 0.3.0)
2023
ddpca : Diagonally Dominant Principal Component Analysis (Version 1.1)
2019
ddtlcm : Latent Class Analysis with Dirichlet Diffusion Tree Process Prior (Version 0.2.1)
2023
deepNN : Deep Learning (Version 1.2)
2019
deepgp : Bayesian Deep Gaussian Processes using MCMC (Version 1.1.3)
2020
deepregression : Fitting Deep Distributional Regression (Version 2.2.0)
2021
demic : Dynamic Estimator of Microbial Communities (Version 2.0.0)
2024
demu : Optimal Design Emulators via Point Processes (Version 0.3.0)
2018
denoiseR : Regularized Low Rank Matrix Estimation (Version 1.0.2)
2016
denseFLMM : Functional Linear Mixed Models for Densely Sampled Data (Version 0.1.2)
2017
depCensoring : Statistical Methods for Survival Data with Dependent Censoring (Version 0.1.5)
2024
detect : Analyzing Wildlife Data with Detection Error (Version 0.4-6)
2011
dfr : Dual Feature Reduction for SGL (Version 0.1.5)
2024
dglars : Differential Geometric Least Angle Regression (Version 2.1.7)
2012
dhglm : Double Hierarchical Generalized Linear Models (Version 2.0)
2011
diagL1 : Routines for Fit, Inference and Diagnostics in Linear L1 and LAD Models (Version 1.0.0)
2023
did : Treatment Effects with Multiple Periods and Groups (Version 2.1.2)
2018
did2s : Two-Stage Difference-in-Differences Following Gardner (2021) (Version 1.0.2)
2021
didimputation : Imputation Estimator from Borusyak, Jaravel, and Spiess (2021) (Version 0.3.0)
2021
diffusionMap : Diffusion Map (Version 1.2.0)
2009
dineR : Differential Network Estimation in R (Version 1.0.1)
2021
dipw : Debiased Inverse Propensity Score Weighting (Version 0.1.0)
2020
dirttee : Distributional Regression for Time to Event Data (Version 1.0.2)
2022
disaggregation : Disaggregation Modelling (Version 0.4.0)
2019
discfrail : Cox Models for Time-to-Event Data with Nonparametric Discrete Group-Specific Frailties (Version 0.1)
2019
discSurv : Discrete Time Survival Analysis (Version 2.0.0)
2015
disordR : Non-Ordered Vectors (Version 0.9-8-4)
2021
distfreereg : Distribution-Free Goodness-of-Fit Testing for Regression (Version 1.0.1)
2024
distrom : Distributed Multinomial Regression (Version 1.0.1)
2013
diversityForest : Innovative Complex Split Procedures in Random Forests Through Candidate Split Sampling (Version 0.5.0)
2020
dmm : Dyadic Mixed Model for Pedigree Data (Version 3.1-1)
2015
doBy : Groupwise Statistics, LSmeans, Linear Estimates, Utilities (Version 4.6.25)
2006
dplR : Dendrochronology Program Library in R (Version 1.7.8)
2007
dr4pl : Dose Response Data Analysis using the 4 Parameter Logistic (4pl) Model (Version 2.0.0)
2017
drape : Doubly Robust Average Partial Effects (Version 0.0.2)
2023
drf : Distributional Random Forests (Version 1.1.0)
2020
dsem : Fit Dynamic Structural Equation Models (Version 1.5.0)
2023
dst : Using the Theory of Belief Functions (Version 1.8.0)
2015
dtwclust : Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance (Version 6.0.0)
2015
dualScale : Dual Scaling Analysis of Data (Version 1.0.0)
2014
dyndimred : Dimensionality Reduction Methods in a Common Format (Version 1.0.4)
2019
dyngen : A Multi-Modal Simulator for Spearheading Single-Cell Omics Analyses (Version 1.0.5)
2020
dynr : Dynamic Models with Regime-Switching (Version 0.1.16-105)
2016
dynutils : Common Functionality for the 'dynverse' Packages (Version 1.0.11)
2018
dynwrap : Representing and Inferring Single-Cell Trajectories (Version 1.2.4)
2019
e1071 : Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien (Version 1.7-16)
1999
eBsc : "Empirical Bayes Smoothing Splines with Correlated Errors" (Version 4.17)
2020
eCAR : Eigenvalue CAR Models (Version 0.1.2)
2021
ePCR : Ensemble Penalized Cox Regression for Survival Prediction (Version 0.11.0)
2017
eRm : Extended Rasch Modeling (Version 1.0-6)
2006
easySdcTable : Easy Interface to the Statistical Disclosure Control Package 'sdcTable' Extended with Own Implementation of 'GaussSuppression' (Version 1.0.7)
2016
eatATA : Create Constraints for Small Test Assembly Problems (Version 1.1.2)
2020
echos : Echo State Networks for Time Series Modeling and Forecasting (Version 1.0.1)
2025
econet : Estimation of Parameter-Dependent Network Centrality Measures (Version 1.0.0.1)
2018
ecpc : Flexible Co-Data Learning for High-Dimensional Prediction (Version 3.1.1)
2021
ef : Modelling Framework for the Estimation of Salmonid Abundance (Version 1.2.0)
2020
epca : Exploratory Principal Component Analysis (Version 1.1.0)
2020
epigrowthfit : Nonlinear Mixed Effects Models of Epidemic Growth (Version 0.15.4)
2024
equateMultiple : Equating of Multiple Forms (Version 1.1.1)
2017
ergMargins : Process Analysis for Exponential Random Graph Models (Version 1.3)
2019
ergm.multi : Fit, Simulate and Diagnose Exponential-Family Models for Multiple or Multilayer Networks (Version 0.2.1.1)
2022
espadon : Easy Study of Patient DICOM Data in Oncology (Version 1.10.0)
2022
estimateW : Estimation of Spatial Weight Matrices (Version 0.0.1)
2022
estimators : Parameter Estimation (Version 0.8.5)
2024
eva : Extreme Value Analysis with Goodness-of-Fit Testing (Version 0.2.6)
2015
evalITR : Evaluating Individualized Treatment Rules (Version 1.0.0)
2020
evclust : Evidential Clustering (Version 2.0.3)
2016
eventPred : Event Prediction (Version 0.2.6)
2023
evola : Evolutionary Algorithm (Version 1.0.4)
2024
evolqg : Evolutionary Quantitative Genetics (Version 0.3-4)
2015
evolvability : Calculation of Evolvability Parameters (Version 2.0.0)
2014
excursions : Excursion Sets and Contour Credibility Regions for Random Fields (Version 2.5.8)
2013
expectreg : Expectile and Quantile Regression (Version 0.53)
2010
expertsurv : Incorporate Expert Opinion with Parametric Survival Models (Version 1.4.0)
2023
expm : Matrix Exponential, Log, 'etc' (Version 1.0-0)
2010
eyetrackingR : Eye-Tracking Data Analysis (Version 0.2.1)
2015
ez : Easy Analysis and Visualization of Factorial Experiments (Version 4.4-0)
2009
fGarch : Rmetrics - Autoregressive Conditional Heteroskedastic Modelling (Version 4033.92)
2007
fPASS : Power and Sample Size for Projection Test under Repeated Measures (Version 1.0.0)
2023
fabR : Wrapper Functions Collection Used in Data Pipelines (Version 2.1.0)
2023
fabletools : Core Tools for Packages in the 'fable' Framework (Version 0.5.0)
2019
face : Fast Covariance Estimation for Sparse Functional Data (Version 0.1-7)
2016
factReg : Multi-Environment Genomic Prediction with Penalized Factorial Regression (Version 1.0.0)
2023
fad : Factor Analysis for Data (Version 0.9-1)
2020
fanc : Penalized Likelihood Factor Analysis via Nonconvex Penalty (Version 2.3.11)
2012
fastFMM : Fast Functional Mixed Models using Fast Univariate Inference (Version 0.3.0)
2023
fastLink : Fast Probabilistic Record Linkage with Missing Data (Version 0.6.1)
2017
fastNaiveBayes : Extremely Fast Implementation of a Naive Bayes Classifier (Version 2.2.1)
2019
fastPLS : A Fast Implementation of Partial Least Square (Version 0.2)
2024
fastRG : Sample Generalized Random Dot Product Graphs in Linear Time (Version 0.3.2)
2021
fastTopics : Fast Algorithms for Fitting Topic Models and Non-Negative Matrix Factorizations to Count Data (Version 0.6-192)
2022
fastadi : Self-Tuning Data Adaptive Matrix Imputation (Version 0.1.1)
2022
fastcmprsk : Fine-Gray Regression via Forward-Backward Scan (Version 1.24.10)
2019
fastcox : Lasso and Elastic-Net Penalized Cox's Regression in High Dimensions Models using the Cocktail Algorithm (Version 1.1.3)
2012
fastcpd : Fast Change Point Detection via Sequential Gradient Descent (Version 0.14.6)
2023
fastglmpca : Fast Algorithms for Generalized Principal Component Analysis (Version 0.1-103)
2024
fastkqr : A Fast Algorithm for Kernel Quantile Regression (Version 1.0.0)
2024
fbar : An Extensible Approach to Flux Balance Analysis (Version 0.6.0)
2016
fcaR : Formal Concept Analysis (Version 1.2.2)
2020
fdaMocca : Model-Based Clustering for Functional Data with Covariates (Version 0.1-1)
2021
fdaPDE : Physics-Informed Spatial and Functional Data Analysis (Version 1.1-21)
2016
fdaconcur : Concurrent Regression and History Index Models for Functional Data (Version 0.1.3)
2022
fdapace : Functional Data Analysis and Empirical Dynamics (Version 0.6.0)
2016
fdarep : Two-Dimensional FPCA, Marginal FPCA, and Product FPCA for Repeated Functional Data (Version 0.1.1)
2024
fdasrvf : Elastic Functional Data Analysis (Version 2.3.6)
2012
fdesigns : Optimal Experimental Designs for Functional/Dynamic Models (Version 1.0)
2024
fglsnet : A Feasible Generalized Least Squares Estimator for Regression Analysis of Outcomes with Network Dependence (Version 1.1)
2021
fiberLD : Fiber Length Determination (Version 0.1-8)
2019
file2meco : Transform Files to 'microtable' Object with 'microeco' Package (Version 0.9.1)
2021
flacco : Feature-Based Landscape Analysis of Continuous and Constrained Optimization Problems (Version 1.8)
2015
flare : Family of Lasso Regression (Version 1.7.0.2)
2012
flashier : Empirical Bayes Matrix Factorization (Version 1.0.7)
2023
flexrsurv : Flexible Relative Survival Analysis (Version 2.0.18)
2016
flexsurv : Flexible Parametric Survival and Multi-State Models (Version 2.3.2)
2011
flowml : A Backend for a 'nextflow' Pipeline that Performs Machine-Learning-Based Modeling of Biomedical Data (Version 0.1.3)
2023
fmcmc : A friendly MCMC framework (Version 0.5-2)
2019
fmesher : Triangle Meshes and Related Geometry Tools (Version 0.2.0)
2023
foreSIGHT : Systems Insights from Generation of Hydroclimatic Timeseries (Version 1.2.0)
2018
fossilbrush : Automated Cleaning of Fossil Occurrence Data (Version 1.0.5)
2022
frailtyEM : Fitting Frailty Models with the EM Algorithm (Version 1.0.1)
2017
frailtyHL : Frailty Models via Hierarchical Likelihood (Version 2.3)
2011
frechet : Statistical Analysis for Random Objects and Non-Euclidean Data (Version 0.3.0)
2020
freebird : Estimation and Inference for High Dimensional Mediation and Surrogate Analysis (Version 1.0)
2022
fssemR : Fused Sparse Structural Equation Models to Jointly Infer Gene Regulatory Network (Version 0.1.8)
2019
funStatTest : Statistical Testing for Functional Data (Version 1.0.3)
2023
funcharts : Functional Control Charts (Version 1.6.0)
2021
fundiversity : Easy Computation of Functional Diversity Indices (Version 1.1.1)
2021
funrar : Functional Rarity Indices Computation (Version 1.5.0)
2016
fuser : Fused Lasso for High-Dimensional Regression over Groups (Version 1.0.1)
2017
gKRLS : Generalized Kernel Regularized Least Squares (Version 1.0.4)
2023
gMCP : Graph Based Multiple Comparison Procedures (Version 0.8-17)
2010
gMOIP : Tools for 2D and 3D Plots of Single and Multi-Objective Linear/Integer Programming Models (Version 1.5.4)
2017
gRbase : A Package for Graphical Modelling in R (Version 2.0.3)
2004
gRim : Graphical Interaction Models (Version 0.3.4)
2011
gTestsMulti : New Graph-Based Multi-Sample Tests (Version 0.1.1)
2022
gWQS : Generalized Weighted Quantile Sum Regression (Version 3.0.5)
2016
galamm : Generalized Additive Latent and Mixed Models (Version 0.2.1)
2023
gallery : Generate Test Matrices for Numerical Experiments (Version 1.0.0)
2024
gamlr : Gamma Lasso Regression (Version 1.13-8)
2013
gamlss.lasso : Extra Lasso-Type Additive Terms for GAMLSS (Version 1.0-1)
2021
gamm4 : Generalized Additive Mixed Models using 'mgcv' and 'lme4' (Version 0.2-6)
2009
gammi : Generalized Additive Mixed Model Interface (Version 0.2)
2024
gap : Genetic Analysis Package (Version 1.6)
2004
gasmodel : Generalized Autoregressive Score Models (Version 0.6.0)
2022
gasper : Graph Signal Processing (Version 1.1.6)
2020
gbmt : Group-Based Multivariate Trajectory Modeling (Version 0.1.4)
2021
gcKrig : Analysis of Geostatistical Count Data using Gaussian Copulas (Version 1.1.8)
2016
gcbd : 'GPU'/CPU Benchmarking in Debian-Based Systems (Version 0.2.7)
2010
gcdnet : The (Adaptive) LASSO and Elastic Net Penalized Least Squares, Logistic Regression, Hybrid Huberized Support Vector Machines, Squared Hinge Loss Support Vector Machines and Expectile Regression using a Fast Generalized Coordin (Version 1.0.6)
2012
gdim : Estimate Graph Dimension using Cross-Validated Eigenvalues (Version 0.1.0)
2023
gdistance : Distances and Routes on Geographical Grids (Version 1.6.4)
2011
gear : Geostatistical Analysis in R (Version 0.3.4)
2015
geeM : Solve Generalized Estimating Equations (Version 0.10.1)
2012
geeasy : Solve Generalized Estimating Equations for Clustered Data (Version 0.1.2)
2022
geecure : Marginal Proportional Hazards Mixture Cure Models with Generalized Estimating Equations (Version 1.0-6)
2017
geex : An API for M-Estimation (Version 1.1.1)
2017
gemma2 : GEMMA Multivariate Linear Mixed Model (Version 0.1.3)
2019
gemtc : Network Meta-Analysis Using Bayesian Methods (Version 1.0-2)
2012
gen3sis : General Engine for Eco-Evolutionary Simulations (Version 1.5.11)
2020
genlasso : Path Algorithm for Generalized Lasso Problems (Version 1.6.1)
2012
genscore : Generalized Score Matching Estimators (Version 1.0.2.2)
2020
geommc : Geometric Markov Chain Sampling (Version 0.1.1)
2024
geomorph : Geometric Morphometric Analyses of 2D and 3D Landmark Data (Version 4.0.10)
2012
geostan : Bayesian Spatial Analysis (Version 0.8.1)
2022
geostatsp : Geostatistical Modelling with Likelihood and Bayes (Version 2.0.8)
2013
gesso : Hierarchical GxE Interactions in a Regularized Regression Model (Version 1.0.2)
2021
gets : General-to-Specific (GETS) Modelling and Indicator Saturation Methods (Version 0.38)
2014
getspanel : General-to-Specific Modelling of Panel Data (Version 0.2.0)
2023
ggbrain : Create Images of Volumetric Brain Data in NIfTI Format Using 'ggplot2' Syntax (Version 0.8.1)
2022
ggeffects : Create Tidy Data Frames of Marginal Effects for 'ggplot' from Model Outputs (Version 2.2.0)
2017
ggmix : Variable Selection in Linear Mixed Models for SNP Data (Version 0.0.2)
2020
ggsector : Draw Sectors (Version 1.7.0)
2022
gibasa : An Alternative 'Rcpp' Wrapper of 'MeCab' (Version 1.1.2)
2023
gif : Graphical Independence Filtering (Version 0.1.1)
2020
gllvm : Generalized Linear Latent Variable Models (Version 2.0)
2017
glmm : Generalized Linear Mixed Models via Monte Carlo Likelihood Approximation (Version 1.4.5)
2015
glmmLasso : Variable Selection for Generalized Linear Mixed Models by L1-Penalized Estimation (Version 1.6.3)
2011
glmmPen : High Dimensional Penalized Generalized Linear Mixed Models (pGLMM) (Version 1.5.4.8)
2022
glmmTMB : Generalized Linear Mixed Models using Template Model Builder (Version 1.1.10)
2017
glmmrBase : Generalised Linear Mixed Models in R (Version 0.11.2)
2022
glmmrOptim : Approximate Optimal Experimental Designs Using Generalised Linear Mixed Models (Version 0.3.6)
2023
glmnet : Lasso and Elastic-Net Regularized Generalized Linear Models (Version 4.1-8)
2008
glmnetUtils : Utilities for 'Glmnet' (Version 1.1.9)
2017
glmnetr : Nested Cross Validation for the Relaxed Lasso and Other Machine Learning Models (Version 0.5-5)
2022
glmpca : Dimension Reduction of Non-Normally Distributed Data (Version 0.2.0)
2019
glober : Estimating Functions with Multivariate B-Splines (Version 1.0)
2023
gmfamm : Generalized Multivariate Functional Additive Models (Version 0.1.0)
2024
gmodels : Various R Programming Tools for Model Fitting (Version 2.19.1)
2005
gmtFD : General Multiple Tests for Univariate and Multivariate Functional Data (Version 0.1.0)
2024
gmwmx : Estimate Functional and Stochastic Parameters of Linear Models with Correlated Residuals (Version 1.0.3)
2022
gnm : Generalized Nonlinear Models (Version 1.1-5)
2005
goat : Gene Set Analysis Using the Gene Set Ordinal Association Test (Version 1.1.2)
2024
gofcat : Goodness-of-Fit Measures for Categorical Response Models (Version 0.1.2)
2022
goric : Generalized Order-Restricted Information Criterion (Version 1.1-2)
2011
gpboost : Combining Tree-Boosting with Gaussian Process and Mixed Effects Models (Version 1.5.6)
2021
gplite : General Purpose Gaussian Process Modelling (Version 0.13.0)
2021
gps : General P-Splines (Version 1.2)
2022
grafify : Easy Graphs for Data Visualisation and Linear Models for ANOVA (Version 4.0.1)
2022
grandR : Comprehensive Analysis of Nucleotide Conversion Sequencing Data (Version 0.2.6)
2022
graph4lg : Build Graphs for Landscape Genetics Analysis (Version 1.8.0)
2019
graphicalVAR : Graphical VAR for Experience Sampling Data (Version 0.3.4)
2015
graphsim : Simulate Expression Data from 'igraph' Networks (Version 1.0.3)
2020
greed : Clustering and Model Selection with the Integrated Classification Likelihood (Version 0.6.1)
2021
gremlin : Mixed-Effects REML Incorporating Generalized Inverses (Version 1.1.0)
2018
grf : Generalized Random Forests (Version 2.4.0)
2017
growthrate : Bayesian reconstruction of growth velocity (Version 1.3)
2011
grpCox : Penalized Cox Model for High-Dimensional Data with Grouped Predictors (Version 1.0.2)
2020
grpreg : Regularization Paths for Regression Models with Grouped Covariates (Version 3.5.0)
2008
gsbm : Estimate Parameters in the Generalized SBM (Version 0.2.2)
2020
gslnls : GSL Multi-Start Nonlinear Least-Squares Fitting (Version 1.4.1)
2021
gustave : A User-Oriented Statistical Toolkit for Analytical Variance Estimation (Version 1.0.0)
2018
gwid : Genome-Wide Identity-by-Descent (Version 0.3.0)
2023
h2o : R Interface for the 'H2O' Scalable Machine Learning Platform (Version 3.44.0.3)
2014
h2o4gpu : Interface to 'H2O4GPU' (Version 0.3.3)
2018
hIRT : Hierarchical Item Response Theory Models (Version 0.3.0)
2017
hal9001 : The Scalable Highly Adaptive Lasso (Version 0.4.6)
2020
hamlet : Hierarchical Optimal Matching and Machine Learning Toolbox (Version 0.9.6)
2014
hardhat : Construct Modeling Packages (Version 1.4.1)
2019
harmony : Fast, Sensitive, and Accurate Integration of Single Cell Data (Version 1.2.3)
2021
hbsae : Hierarchical Bayesian Small Area Estimation (Version 1.2)
2012
hdf5r.Extra : Extensions for 'HDF5' R Interfaces (Version 0.1.0)
2023
hdi : High-Dimensional Inference (Version 0.1-9)
2014
hdqr : Fast Algorithm for Penalized Quantile Regression (Version 1.0.1)
2024
hdsvm : Fast Algorithm for Support Vector Machine (Version 1.0.1)
2024
hero : Spatio-Temporal (Hero) Sandwich Smoother (Version 0.6)
2018
heteromixgm : Copula Graphical Models for Heterogeneous Mixed Data (Version 2.0.2)
2023
hglm.data : Data for the 'hglm' Package (Version 1.0-1)
2014
hglm : Hierarchical Generalized Linear Models (Version 2.2-1)
2010
hibayes : Individual-Level, Summary-Level and Single-Step Bayesian Regression Model (Version 3.0.3)
2021
hierSDR : Hierarchical Sufficient Dimension Reduction (Version 0.1)
2021
hierarchicalSets : Set Data Visualization Using Hierarchies (Version 1.0.4)
2016
highriskzone : Determining and Evaluating High-Risk Zones (Version 1.4.9)
2012
higrad : Statistical Inference for Online Learning and Stochastic Approximation via HiGrad (Version 0.1.0)
2018
historicalborrow : Non-Longitudinal Bayesian Historical Borrowing Models (Version 1.1.0)
2022
historicalborrowlong : Longitudinal Bayesian Historical Borrowing Models (Version 0.1.0)
2022
hmclearn : Fit Statistical Models Using Hamiltonian Monte Carlo (Version 0.0.5)
2020
hmmTMB : Fit Hidden Markov Models using Template Model Builder (Version 1.0.2)
2023
hpfilter : The One- And Two-Sided Hodrick-Prescott Filter (Version 1.0.2)
2023
hrf : Hemodynamic Response Function (Version 0.1.3)
2025
hrqglas : Group Variable Selection for Quantile and Robust Mean Regression (Version 1.1.0)
2021
hscovar : Calculation of Covariance Between Markers for Half-Sib Families (Version 0.4.2)
2020
hsem : Hierarchical Structural Equation Model (Version 1.0)
2021
hspm : Heterogeneous Spatial Models (Version 1.1)
2022
hsrecombi : Estimation of Recombination Rate and Maternal LD in Half-Sibs (Version 1.0.1)
2020
hts : Hierarchical and Grouped Time Series (Version 6.0.3)
2010
huge : High-Dimensional Undirected Graph Estimation (Version 1.3.5)
2010
hySAINT : Hybrid Genetic and Simulated Annealing Algorithm for High Dimensional Linear Models with Interaction Effects (Version 1.2.1)
2024
hydra : Hyperbolic Embedding (Version 0.1.0)
2019
hypr : Hypothesis Matrix Translation (Version 0.2.8)
2019
iAdapt : Two-Stage Adaptive Dose-Finding Clinical Trial Design (Version 2.0.1)
2019
iCARH : Integrative Conditional Autoregressive Horseshoe Model (Version 2.0.2.1)
2019
iCellR : Analyzing High-Throughput Single Cell Sequencing Data (Version 1.6.7)
2019
iGraphMatch : Tools for Graph Matching (Version 2.0.5)
2021
iMRMC : Multi-Reader, Multi-Case Analysis Methods (ROC, Agreement, and Other Metrics) (Version 2.1.0)
2017
iPRISM : Intelligent Predicting Response to Cancer Immunotherapy Through Systematic Modeling (Version 0.1.1)
2024
iTOP : Inferring the Topology of Omics Data (Version 1.0.2)
2018
ib : Bias Correction via Iterative Bootstrap (Version 0.2.0)
2020
ibmdbR : IBM in-Database Analytics for R (Version 1.51.0)
2014
icdGLM : EM by the Method of Weights for Incomplete Categorical Data in Generlized Linear Models (Version 1.0.0)
2016
ideanet : Integrating Data Exchange and Analysis for Networks ('ideanet') (Version 1.0.0)
2024
igraph : Network Analysis and Visualization (Version 2.1.4)
2006
immcp : Poly-Pharmacology Toolkit for Traditional Chinese Medicine Research (Version 1.0.3)
2020
inca : Integer Calibration (Version 0.0.4)
2016
incidentally : Generates Incidence Matrices and Bipartite Graphs (Version 1.0.2)
2022
inferCSN : Inferring Cell-Specific Gene Regulatory Network (Version 1.0.8)
2023
influence.ME : Tools for Detecting Influential Data in Mixed Effects Models (Version 0.9-9)
2009
influenceR : Software Tools to Quantify Structural Importance of Nodes in a Network (Version 0.1.5)
2015
inlabru : Bayesian Latent Gaussian Modelling using INLA and Extensions (Version 2.12.0)
2017
insight : Easy Access to Model Information for Various Model Objects (Version 1.1.0)
2019
intensitynet : Intensity Analysis of Spatial Point Patterns on Complex Networks (Version 1.4.0)
2022
invertiforms : Invertible Transforms for Matrices (Version 0.1.1)
2022
invivoPKfit : Fits Toxicokinetic Models to In Vivo PK Data Sets (Version 2.0.0)
2025
irlba : Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices (Version 2.3.5.1)
2011
irtQ : Unidimensional Item Response Theory Modeling (Version 0.2.1)
2023
islasso : The Induced Smoothed Lasso (Version 1.5.2)
2019
isodistrreg : Isotonic Distributional Regression (IDR) (Version 0.1.0)
2021
isokernel : Isolation Kernel (Version 0.1.0)
2021
isotonic.pen : Penalized Isotonic Regression in one and two dimensions (Version 1.0)
2014
isotree : Isolation-Based Outlier Detection (Version 0.6.1-4)
2019
ivdesign : Hypothesis Testing in Cluster-Randomized Encouragement Designs (Version 0.1.0)
2020
ivmodel : Statistical Inference and Sensitivity Analysis for Instrumental Variables Model (Version 1.9.1)
2015
ivmte : Instrumental Variables: Extrapolation by Marginal Treatment Effects (Version 1.4.0)
2019
jetty : Execute R in a 'Docker' Context (Version 0.2.0)
2025
jewel : Graphical Models Estimation from Multiple Sources (Version 2.0.2)
2023
joineRML : Joint Modelling of Multivariate Longitudinal Data and Time-to-Event Outcomes (Version 0.4.7)
2016
jordan : A Suite of Routines for Working with Jordan Algebras (Version 1.0-6)
2021
jrSiCKLSNMF : Multimodal Single-Cell Omics Dimensionality Reduction (Version 1.2.2)
2023
kanjistat : A Statistical Framework for the Analysis of Japanese Kanji Characters (Version 0.14.1)
2023
kcmeans : Conditional Expectation Function Estimation with K-Conditional-Means (Version 0.1.0)
2023
keyATM : Keyword Assisted Topic Models (Version 0.5.2)
2020
kgraph : Knowledge Graphs Constructions and Visualizations (Version 1.0.1)
2024
kinship2 : Pedigree Functions (Version 1.9.6.1)
2011
kknn : Weighted k-Nearest Neighbors (Version 1.3.1)
2004
klic : Kernel Learning Integrative Clustering (Version 1.0.4)
2020
knn.covertree : An Accurate kNN Implementation with Multiple Distance Measures (Version 1.0)
2019
knockoff : The Knockoff Filter for Controlled Variable Selection (Version 0.3.6)
2014
koRpus : Text Analysis with Emphasis on POS Tagging, Readability, and Lexical Diversity (Version 0.13-8)
2012
konfound : Quantify the Robustness of Causal Inferences (Version 1.0.2)
2018
ks : Kernel Smoothing (Version 1.14.3)
2005
l1spectral : An L1-Version of the Spectral Clustering (Version 0.99.6)
2021
landsepi : Landscape Epidemiology and Evolution (Version 1.5.1)
2018
latentFactoR : Data Simulation Based on Latent Factors (Version 0.0.6)
2022
latentcor : Fast Computation of Latent Correlations for Mixed Data (Version 2.0.1)
2021
lava : Latent Variable Models (Version 1.8.1)
2012
lavaSearch2 : Tools for Model Specification in the Latent Variable Framework (Version 2.0.3)
2018
lcpm : Ordinal Outcomes: Generalized Linear Models with the Log Link (Version 0.1.1)
2019
lda : Collapsed Gibbs Sampling Methods for Topic Models (Version 1.5.2)
2009
leakyIV : Leaky Instrumental Variables (Version 0.0.1)
2024
leastcostpath : Modelling Pathways and Movement Potential Within a Landscape (Version 2.0.12)
2020
lefko3 : Historical and Ahistorical Population Projection Matrix Analysis (Version 6.3.2)
2020
legion : Forecasting Using Multivariate Models (Version 0.2.1)
2021
leiden : R Implementation of Leiden Clustering Algorithm (Version 0.4.3.1)
2019
leidenAlg : Implements the Leiden Algorithm via an R Interface (Version 1.1.4)
2020
lfactors : Factors with Levels (Version 1.0.4)
2015
lfe : Linear Group Fixed Effects (Version 3.1.1)
2011
lgcp : Log-Gaussian Cox Process (Version 2.0)
2011
lightgbm : Light Gradient Boosting Machine (Version 4.6.0)
2020
lime : Local Interpretable Model-Agnostic Explanations (Version 0.5.3)
2017
lineartestr : Linear Specification Testing (Version 1.0.0)
2020
lingmatch : Linguistic Matching and Accommodation (Version 1.0.7)
2021
literanger : Random Forests for Multiple Imputation Based on 'ranger' (Version 0.1.1)
2023
lmds : Landmark Multi-Dimensional Scaling (Version 0.1.0)
2019
lme4breeding : Relationship-Based Mixed-Effects Models (Version 1.0.50)
2024
lme4 : Linear Mixed-Effects Models using 'Eigen' and S4 (Version 1.1-36)
2003
lmeInfo : Information Matrices for 'lmeStruct' and 'glsStruct' Objects (Version 0.3.2)
2020
lmeresampler : Bootstrap Methods for Nested Linear Mixed-Effects Models (Version 0.2.4)
2016
lmfor : Functions for Forest Biometrics (Version 1.6)
2015
locStra : Fast Implementation of (Local) Population Stratification Methods (Version 1.9)
2019
logbin : Relative Risk Regression Using the Log-Binomial Model (Version 2.0.5)
2014
logcondiscr : Estimate a Log-Concave Probability Mass Function from Discrete i.i.d. Observations (Version 1.0.6)
2011
logistf : Firth's Bias-Reduced Logistic Regression (Version 1.26.0)
2003
lognorm : Functions for the Lognormal Distribution (Version 0.1.10)
2018
lolog : Latent Order Logistic Graph Models (Version 1.3.1)
2018
lotri : A Simple Way to Specify Symmetric, Block Diagonal Matrices (Version 1.0.0)
2019
lpcde : Boundary Adaptive Local Polynomial Conditional Density Estimator (Version 0.1.6)
2022
lsbs : Bandwidth Selection for Level Sets and HDR Estimation (Version 0.1)
2018
ltmle : Longitudinal Targeted Maximum Likelihood Estimation (Version 1.3-0)
2013
ludic : Linkage Using Diagnosis Codes (Version 0.2.0)
2016
lvnet : Latent Variable Network Modeling (Version 0.3.5)
2016
madness : Automatic Differentiation of Multivariate Operations (Version 0.2.8)
2015
madrat : May All Data be Reproducible and Transparent (MADRaT) * (Version 3.15.6)
2017
makemyprior : Intuitive Construction of Joint Priors for Variance Parameters (Version 1.2.2)
2021
manifold : Operations for Riemannian Manifolds (Version 0.1.1)
2022
manydist : Unbiased Distances for Mixed-Type Data (Version 0.4.3)
2025
maotai : Tools for Matrix Algebra, Optimization and Inference (Version 0.2.6)
2019
mapfit : PH/MAP Parameter Estimation (Version 1.0.0)
2015
marcher : Migration and Range Change Estimation in R (Version 0.0-2)
2017
marked : Mark-Recapture Analysis for Survival and Abundance Estimation (Version 1.2.8)
2013
markovchain : Easy Handling Discrete Time Markov Chains (Version 0.10.0)
2013
matrixset : Creating, Manipulating and Annotating Matrix Ensemble (Version 0.4.0)
2023
matsbyname : An Implementation of Matrix Mathematics that Respects Row and Column Names (Version 0.6.11)
2019
matsindf : Matrices in Data Frames (Version 0.4.8)
2019
mboost : Model-Based Boosting (Version 2.9-11)
2006
mbr : Mass Balance Reconstruction (Version 0.0.1)
2021
mbsts : Multivariate Bayesian Structural Time Series (Version 3.0)
2020
mcen : Multivariate Cluster Elastic Net (Version 1.2.1)
2018
mclogit : Multinomial Logit Models, with or without Random Effects or Overdispersion (Version 0.9.6)
2010
mcmcsae : Markov Chain Monte Carlo Small Area Estimation (Version 0.7.8)
2020
mcompanion : Objects and Methods for Multi-Companion Matrices (Version 0.6)
2017
mdatools : Multivariate Data Analysis for Chemometrics (Version 0.14.2)
2014
mdhglm : Multivariate Double Hierarchical Generalized Linear Models (Version 1.8)
2016
mdw : Maximum Diversity Weighting (Version 2024.8-1)
2017
medflex : Flexible Mediation Analysis Using Natural Effect Models (Version 0.6-10)
2014
mediation : Causal Mediation Analysis (Version 4.5.0)
2009
mefa : Multivariate Data Handling in Ecology and Biogeography (Version 3.2-9)
2007
mefa4 : Multivariate Data Handling with S4 Classes and Sparse Matrices (Version 0.3-11)
2011
merDeriv : Case-Wise and Cluster-Wise Derivatives for Mixed Effects Models (Version 0.2-4)
2017
merTools : Tools for Analyzing Mixed Effect Regression Models (Version 0.6.2)
2015
mermboost : Gradient Boosting for Generalized Additive Mixed Models (Version 0.1.0)
2025
metaBLUE : BLUE for Combining Location and Scale Information in a Meta-Analysis (Version 1.0.0)
2018
metaSDTreg : Regression Models for Meta Signal Detection Theory (Version 0.2.2)
2019
metaSEM : Meta-Analysis using Structural Equation Modeling (Version 1.5.0)
2015
metafor : Meta-Analysis Package for R (Version 4.8-0)
2009
metafuse : Fused Lasso Approach in Regression Coefficient Clustering (Version 2.0-1)
2015
metagear : Comprehensive Research Synthesis Tools for Systematic Reviews and Meta-Analysis (Version 0.7)
2015
metanetwork : Handling and Representing Trophic Networks in Space and Time (Version 0.7.0)
2022
metrix : Water Quality Metrics Calculator (Version 1.1.0)
2022
mfaces : Fast Covariance Estimation for Multivariate Sparse Functional Data (Version 0.1-4)
2021
mfpp : 'Matrix-Based Flexible Project Planning' (Version 0.0.8)
2022
mgcv : Mixed GAM Computation Vehicle with Automatic Smoothness Estimation (Version 1.9-1)
2000
mglasso : Multiscale Graphical Lasso (Version 0.1.2)
2022
mgss : A Matrix-Free Multigrid Preconditioner for Spline Smoothing (Version 1.2)
2021
mgwrsar : GWR, Mixed GWR and Multiscale GWR with Spatial Autocorrelation (Version 1.1)
2018
mi : Missing Data Imputation and Model Checking (Version 1.1)
2008
miRNAss : Genome-Wide Discovery of Pre-miRNAs with few Labeled Examples (Version 1.5)
2017
miceadds : Some Additional Multiple Imputation Functions, Especially for 'mice' (Version 3.17-44)
2014
micemd : Multiple Imputation by Chained Equations with Multilevel Data (Version 1.10.0)
2017
midasr : Mixed Data Sampling Regression (Version 0.8)
2013
midasml : Estimation and Prediction Methods for High-Dimensional Mixed Frequency Time Series Data (Version 0.1.10)
2020
mildsvm : Multiple-Instance Learning with Support Vector Machines (Version 0.4.0)
2022
mind : Multivariate Model Based Inference for Domains (Version 1.1.0)
2021
mirt : Multidimensional Item Response Theory (Version 1.44.0)
2011
misclassGLM : Computation of Generalized Linear Models with Misclassified Covariates Using Side Information (Version 0.3.5)
2016
missCompare : Intuitive Missing Data Imputation Framework (Version 1.0.3)
2019
missSBM : Handling Missing Data in Stochastic Block Models (Version 1.0.4)
2019
mistral : Methods in Structural Reliability (Version 2.2.2)
2013
misty : Miscellaneous Functions 'T. Yanagida' (Version 0.7.0)
2020
mixKernel : Omics Data Integration Using Kernel Methods (Version 0.9-1)
2017
mixedCCA : Sparse Canonical Correlation Analysis for High-Dimensional Mixed Data (Version 1.6.2)
2020
mixedbiastest : Bias Diagnostic for Linear Mixed Models (Version 0.3.0)
2024
mixgb : Multiple Imputation Through 'XGBoost' (Version 1.5.2)
2022
mixhvg : Mixture of Multiple Highly Variable Feature Selection Methods (Version 1.0.1)
2022
mlapi : Abstract Classes for Building 'scikit-learn' Like API (Version 0.1.1)
2017
mlergm : Multilevel Exponential-Family Random Graph Models (Version 0.8)
2018
mlfit : Iterative Proportional Fitting Algorithms for Nested Structures (Version 0.5.3)
2021
mlmi : Maximum Likelihood Multiple Imputation (Version 1.1.2)
2019
mlmm.gwas : Pipeline for GWAS Using MLMM (Version 1.0.6)
2018
mlmts : Machine Learning Algorithms for Multivariate Time Series (Version 1.1.2)
2022
mlr3 : Machine Learning in R - Next Generation (Version 0.22.1)
2019
mlt.docreg : Most Likely Transformations: Documentation and Regression Tests (Version 1.1-10)
2016
mlt : Most Likely Transformations (Version 1.6-2)
2016
mltools : Machine Learning Tools (Version 0.3.5)
2016
mme : Multinomial Mixed Effects Models (Version 0.1-6)
2014
mmmgee : Simultaneous Inference for Multiple Linear Contrasts in GEE Models (Version 1.20)
2018
mmrm : Mixed Models for Repeated Measures (Version 0.3.14)
2022
mnda : Multiplex Network Differential Analysis (MNDA) (Version 1.0.9)
2023
modgo : Mock Data Generation (Version 1.0.1)
2024
modnets : Modeling Moderated Networks (Version 0.9.0)
2021
mombf : Model Selection with Bayesian Methods and Information Criteria (Version 3.5.4)
2008
mosaic : Project MOSAIC Statistics and Mathematics Teaching Utilities (Version 1.9.1)
2011
mosaicCalc : R-Language Based Calculus Operations for Teaching (Version 0.6.4)
2017
motifcluster : Motif-Based Spectral Clustering of Weighted Directed Networks (Version 0.2.3)
2020
moult : Models for Analysing Moult in Birds (Version 2.3.1)
2011
movecost : Calculation of Slope-Dependant Accumulated Cost Surface, Least-Cost Paths, Least-Cost Corridors, Least-Cost Networks Related to Human Movement Across the Landscape (Version 2.1)
2018
mppR : Multi-Parent Population QTL Analysis (Version 1.5.0)
2018
msaenet : Multi-Step Adaptive Estimation Methods for Sparse Regressions (Version 3.1.2)
2016
mstDIF : A Collection of DIF Tests for Multistage Tests (Version 0.1.8)
2020
multiAssetOptions : Finite Difference Method for Multi-Asset Option Valuation (Version 0.1-2)
2015
multiFANOVA : Multiple Contrast Tests for Functional Data (Version 0.1.0)
2023
multibiplotGUI : Multibiplot Analysis in R (Version 1.1)
2014
multimark : Capture-Mark-Recapture Analysis using Multiple Non-Invasive Marks (Version 2.1.6)
2015
multiness : MULTIplex NEtworks with Shared Structure (Version 1.0.2)
2022
multinma : Bayesian Network Meta-Analysis of Individual and Aggregate Data (Version 0.7.2)
2020
multivar : Penalized Estimation of Multiple-Subject Vector Autoregressive (multi-VAR) Models (Version 1.1.0)
2020
multivarious : Extensible Data Structures for Multivariate Analysis (Version 0.2.0)
2024
multiview : Cooperative Learning for Multi-View Analysis (Version 0.8)
2022
mvSLOUCH : Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses (Version 2.7.6)
2013
mvglmmRank : Multivariate Generalized Linear Mixed Models for Ranking Sports Teams (Version 1.2-4)
2014
mvord : Multivariate Ordinal Regression Models (Version 1.2.5)
2017
mvpd : Multivariate Product Distributions for Elliptically Contoured Distributions (Version 0.0.4)
2022
mvrsquared : Compute the Coefficient of Determination for Vector or Matrix Outcomes (Version 0.1.5)
2020
nadiv : (Non)Additive Genetic Relatedness Matrices (Version 2.18.0)
2011
naivebayes : High Performance Implementation of the Naive Bayes Algorithm (Version 1.0.0)
2017
natural : Estimating the Error Variance in a High-Dimensional Linear Model (Version 0.9.0)
2018
nda : Generalized Network-Based Dimensionality Reduction and Analysis (Version 0.2.4)
2022
ndi : Neighborhood Deprivation Indices (Version 0.1.5)
2022
neat : Efficient Network Enrichment Analysis Test (Version 1.2.4)
2016
nebula : Negative Binomial Mixed Models Using Large-Sample Approximation for Differential Expression Analysis of ScRNA-Seq Data (Version 1.5.3)
2022
net4pg : Handle Ambiguity of Protein Identifications from Shotgun Proteomics (Version 0.1.1)
2021
netCoin : Interactive Analytic Networks (Version 2.1.0)
2016
netShiny : Tool for Comparison and Visualization of Multiple Networks (Version 1.0)
2022
netcom : NETwork COMparison Inference (Version 2.1.7)
2017
netcontrol : Control Theory Methods for Networks (Version 0.1)
2020
netdiffuseR : Analysis of Diffusion and Contagion Processes on Networks (Version 1.22.6)
2016
netgwas : Network-Based Genome Wide Association Studies (Version 1.14.3)
2017
netgsa : Network-Based Gene Set Analysis (Version 4.0.5)
2014
netmeta : Network Meta-Analysis using Frequentist Methods (Version 3.1-1)
2013
netmediate : Micro-Macro Analysis for Social Networks (Version 1.0.1)
2022
netrankr : Analyzing Partial Rankings in Networks (Version 1.2.4)
2018
netregR : Regression of Network Responses (Version 1.0.1)
2018
netseer : Graph Prediction from a Graph Time Series (Version 0.1.1)
2024
nett : Network Analysis and Community Detection (Version 1.0.0)
2022
networkR : Network Analysis and Visualization (Version 0.1.2)
2018
networktree : Recursive Partitioning of Network Models (Version 1.0.1)
2018
neuroim : Data Structures and Handling for Neuroimaging Data (Version 0.0.6)
2014
newsmap : Semi-Supervised Model for Geographical Document Classification (Version 0.9.0)
2018
nlmixr2est : Nonlinear Mixed Effects Models in Population PK/PD, Estimation Routines (Version 3.0.4)
2022
nlmm : Generalized Laplace Mixed-Effects Models (Version 1.1.0)
2020
nlpembeds : Natural Language Processing Embeddings (Version 1.0.0)
2025
nlpsem : Linear and Nonlinear Longitudinal Process in Structural Equation Modeling Framework (Version 0.3)
2023
nlraa : Nonlinear Regression for Agricultural Applications (Version 1.9.7)
2020
nmathresh : Thresholds and Invariant Intervals for Network Meta-Analysis (Version 0.1.6)
2018
nmslibR : Non Metric Space (Approximate) Library (Version 1.0.7)
2018
nonlinearTseries : Nonlinear Time Series Analysis (Version 0.3.1)
2013
nonprobsvy : Inference Based on Non-Probability Samples (Version 0.1.1)
2024
nopaco : Non-Parametric Concordance Coefficient (Version 1.0.9)
2017
norMmix : Direct MLE for Multivariate Normal Mixture Distributions (Version 0.2-0)
2024
npmr : Nuclear Penalized Multinomial Regression (Version 1.3.1)
2016
numbat : Haplotype-Aware CNV Analysis from scRNA-Seq (Version 1.4.2)
2022
nutriNetwork : Structure Learning with Copula Graphical Model (Version 0.1.2)
2019
nvmix : Multivariate Normal Variance Mixtures (Version 0.1-1)
2018
ocf : Ordered Correlation Forest (Version 1.0.3)
2023
oem : Orthogonalizing EM: Penalized Regression for Big Tall Data (Version 2.0.12)
2012
ompr.roi : A Solver for 'ompr' that Uses the R Optimization Infrastructure ('ROI') (Version 1.0.2)
2017
ompr : Model and Solve Mixed Integer Linear Programs (Version 1.0.4)
2017
onion : Octonions and Quaternions (Version 1.5-3)
2005
oosse : Out-of-Sample R² with Standard Error Estimation (Version 1.0.11)
2023
oppr : Optimal Project Prioritization (Version 1.0.4)
2019
optBiomarker : Estimation of Optimal Number of Biomarkers for Two-Group Microarray Based Classifications at a Given Error Tolerance Level for Various Classification Rules (Version 1.0-28)
2009
optbdmaeAT : Optimal Block Designs for Two-Colour cDNA Microarray Experiments (Version 1.0.1)
2017
optiSel : Optimum Contribution Selection and Population Genetics (Version 2.0.9)
2016
optiSolve : Linear, Quadratic, and Rational Optimization (Version 1.0)
2017
optimbase : R Port of the 'Scilab' Optimbase Module (Version 1.0-10)
2010
optrcdmaeAT : Optimal Row-Column Designs for Two-Colour cDNA Microarray Experiments (Version 1.0.0)
2017
optweight : Targeted Stable Balancing Weights Using Optimization (Version 0.2.5)
2018
opusminer : OPUS Miner Algorithm for Filtered Top-k Association Discovery (Version 0.1-1)
2017
ordgam : Additive Model for Ordinal Data using Laplace P-Splines (Version 0.9.1)
2023
ordinal : Regression Models for Ordinal Data (Version 2023.12-4.1)
2010
oscar : Optimal Subset Cardinality Regression (OSCAR) Models Using the L0-Pseudonorm (Version 1.2.1)
2022
osqp : Quadratic Programming Solver using the 'OSQP' Library (Version 0.6.3.3)
2018
pPCA : Partial Principal Component Analysis of Partitioned Large Sparse Matrices (Version 1.1)
2024
pagoda2 : Single Cell Analysis and Differential Expression (Version 1.0.12)
2021
palasso : Sparse Regression with Paired Covariates (Version 1.0.0)
2018
panelvar : Panel Vector Autoregression (Version 0.5.6)
2018
parTimeROC : Parametric Time-Dependent Receiver Operating Characteristic (Version 0.1.0)
2024
parglm : Parallel GLM (Version 0.1.7)
2018
parameters : Processing of Model Parameters (Version 0.24.2)
2019
parsnip : A Common API to Modeling and Analysis Functions (Version 1.3.0)
2018
pbkrtest : Parametric Bootstrap, Kenward-Roger and Satterthwaite Based Methods for Test in Mixed Models (Version 0.5.3)
2011
pcFactorStan : Stan Models for the Paired Comparison Factor Model (Version 1.5.4)
2019
pcalg : Methods for Graphical Models and Causal Inference (Version 2.7-12)
2006
pcgen : Reconstruction of Causal Networks for Data with Random Genetic Effects (Version 0.2.0)
2018
pcts : Periodically Correlated and Periodically Integrated Time Series (Version 0.15.7)
2020
pdp : Partial Dependence Plots (Version 0.8.2)
2016
pdynmc : Moment Condition Based Estimation of Linear Dynamic Panel Data Models (Version 0.9.12)
2020
pedgene : Gene-Level Variant Association Tests for Pedigree Data (Version 3.9)
2013
pedigree : Pedigree Functions (Version 1.4.2)
2009
pedigreeTools : Versatile Functions for Working with Pedigrees (Version 0.3)
2018
pedigreemm : Pedigree-Based Mixed-Effects Models (Version 0.3-5)
2009
pedtricks : Visualize, Summarize and Simulate Data from Pedigrees (Version 0.4.2)
2024
penAFT : Fit the Regularized Gehan Estimator with Elastic Net and Sparse Group Lasso Penalties (Version 0.3.0)
2022
pencal : Penalized Regression Calibration (PRC) for the Dynamic Prediction of Survival (Version 2.2.3)
2020
pense : Penalized Elastic Net S/MM-Estimator of Regression (Version 2.2.2)
2017
pensynth : Penalized Synthetic Control Estimation (Version 0.5.1)
2024
perARMA : Periodic Time Series Analysis (Version 1.7)
2013
performance : Assessment of Regression Models Performance (Version 0.13.0)
2019
permubiome : A Permutation Based Test for Biomarker Discovery in Microbiome Data (Version 1.3.2)
2016
permuco : Permutation Tests for Regression, (Repeated Measures) ANOVA/ANCOVA and Comparison of Signals (Version 1.1.3)
2018
pez : Phylogenetics for the Environmental Sciences (Version 1.2-4)
2014
phangorn : Phylogenetic Reconstruction and Analysis (Version 2.12.1)
2008
phateR : PHATE - Potential of Heat-Diffusion for Affinity-Based Transition Embedding (Version 1.0.7)
2018
pheble : Classifying High-Dimensional Phenotypes with Ensemble Learning (Version 0.1.0)
2023
phia : Post-Hoc Interaction Analysis (Version 0.3-1)
2012
phm : Phrase Mining (Version 1.1.2)
2020
phyloregion : Biogeographic Regionalization and Macroecology (Version 1.0.8)
2020
phyr : Model Based Phylogenetic Analysis (Version 1.1.0)
2019
piar : Price Index Aggregation (Version 0.8.1)
2022
piqp : R Interface to Proximal Interior Point Quadratic Programming Solver (Version 0.2.2)
2023
pkggraph : A Consistent and Intuitive Platform to Explore the Dependencies of Packages on the Comprehensive R Archive Network Like Repositories (Version 0.2.3)
2017
planningML : A Sample Size Calculator for Machine Learning Applications in Healthcare (Version 1.0.1)
2022
plantTracker : Extract Demographic and Competition Data from Fine-Scale Maps (Version 1.1.0)
2023
plasso : Cross-Validated (Post-) Lasso (Version 0.1.2)
2023
pleio : Pleiotropy Test for Multiple Traits on a Genetic Marker (Version 1.9)
2016
plmmr : Penalized Linear Mixed Models for Correlated Data (Version 4.2.1)
2024
pmml : Generate PMML for Various Models (Version 2.5.2)
2007
poismf : Factorization of Sparse Counts Matrices Through Poisson Likelihood (Version 0.4.0-4)
2019
polmineR : Verbs and Nouns for Corpus Analysis (Version 0.8.9)
2016
polyMatrix : Infrastructure for Manipulation Polynomial Matrices (Version 0.9.16)
2020
polycor : Polychoric and Polyserial Correlations (Version 0.8-1)
2004
polyhedralCubature : Multiple Integration over Convex Polyhedra (Version 1.1.0)
2023
polywog : Bootstrapped Basis Regression with Oracle Model Selection (Version 0.4-1)
2012
pomdp : Infrastructure for Partially Observable Markov Decision Processes (POMDP) (Version 1.2.4)
2018
poolfstat : Computing f-Statistics and Building Admixture Graphs Based on Allele Count or Pool-Seq Read Count Data (Version 3.0.0)
2018
porridge : Ridge-Type Penalized Estimation of a Potpourri of Models (Version 0.3.3)
2019
ppmSuite : A Collection of Models that Employ Product Partition Distributions as a Prior on Partitions (Version 0.3.4)
2020
pprof : Modeling, Standardization and Testing for Provider Profiling (Version 1.0.1)
2024
pre : Prediction Rule Ensembles (Version 1.0.7)
2016
predictmeans : Predicted Means for Linear and Semiparametric Models (Version 1.1.1)
2014
primePCA : Projected Refinement for Imputation of Missing Entries in PCA (Version 1.2)
2019
prioriactions : Multi-Action Conservation Planning (Version 0.5.0)
2021
prioritizr : Systematic Conservation Prioritization in R (Version 8.0.6)
2016
prodest : Production Function Estimation (Version 1.0.1)
2017
profoc : Probabilistic Forecast Combination Using CRPS Learning (Version 1.3.3)
2021
provGraphR : Creates Adjacency Matrices for Lineage Searches (Version 1.0.1)
2020
proxyC : Computes Proximity in Large Sparse Matrices (Version 0.4.1)
2018
prozor : Minimal Protein Set Explaining Peptide Spectrum Matches (Version 0.3.1)
2015
psborrow : Bayesian Dynamic Borrowing with Propensity Score (Version 0.2.2)
2021
psborrow2 : Bayesian Dynamic Borrowing Analysis and Simulation (Version 0.0.4.0)
2024
pspatreg : Spatial and Spatio-Temporal Semiparametric Regression Models with Spatial Lags (Version 1.1.2)
2022
psqn : Partially Separable Quasi-Newton (Version 0.3.2)
2020
psychonetrics : Structural Equation Modeling and Confirmatory Network Analysis (Version 0.13)
2019
ptetools : Panel Treatment Effects Tools (Version 1.0.0)
2025
pulsar : Parallel Utilities for Lambda Selection along a Regularization Path (Version 0.3.11)
2016
pvclass : P-Values for Classification (Version 1.4)
2010
pwlmm : PWIGLS for Two-Level Multivariate and Multilevel Linear Models (Version 1.1.1)
2022
qape : Quantile of Absolute Prediction Errors (Version 2.1)
2020
qgg : Statistical Tools for Quantitative Genetic Analyses (Version 1.1.6)
2019
qgraph : Graph Plotting Methods, Psychometric Data Visualization and Graphical Model Estimation (Version 1.9.8)
2011
qlcMatrix : Utility Sparse Matrix Functions for Quantitative Language Comparison (Version 0.9.8)
2014
qpcR : Modelling and Analysis of Real-Time PCR Data (Version 1.4-1)
2008
qrjoint : Joint Estimation in Linear Quantile Regression (Version 2.0-9)
2015
qtkit : Quantitative Text Kit (Version 1.1.1)
2024
qtlpoly : Random-Effect Multiple QTL Mapping in Autopolyploids (Version 0.2.4)
2021
quadrupen : Sparsity by Worst-Case Quadratic Penalties (Version 0.2-12)
2012
quanteda.textmodels : Scaling Models and Classifiers for Textual Data (Version 0.9.10)
2020
quanteda.textplots : Plots for the Quantitative Analysis of Textual Data (Version 0.95)
2020
quanteda.textstats : Textual Statistics for the Quantitative Analysis of Textual Data (Version 0.97.2)
2020
quanteda : Quantitative Analysis of Textual Data (Version 4.2.0)
2015
quantkriging : Quantile Kriging for Stochastic Simulations with Replication (Version 0.1.0)
2020
quantreg : Quantile Regression (Version 6.00)
1999
quid : Bayesian Mixed Models for Qualitative Individual Differences (Version 0.0.1)
2021
r2glmm : Computes R Squared for Mixed (Multilevel) Models (Version 0.1.2)
2016
r2mlm : R-Squared Measures for Multilevel Models (Version 0.3.7)
2020
rARPACK : Solvers for Large Scale Eigenvalue and SVD Problems (Version 0.11-0)
2014
rBMF : Boolean Matrix Factorization (Version 1.1)
2020
rMultiNet : Multi-Layer Networks Analysis (Version 0.1)
2023
rNeighborGWAS : Testing Neighbor Effects in Marker-Based Regressions (Version 1.2.4)
2020
rNeighborQTL : Interval Mapping for Quantitative Trait Loci Underlying Neighbor Effects (Version 1.1.2)
2020
rPanglaoDB : Download and Merge Single-Cell RNA-Seq Data from the PanglaoDB Database (Version 0.2.1)
2021
rSPDE : Rational Approximations of Fractional Stochastic Partial Differential Equations (Version 2.4.0)
2019
rTensor2 : MultiLinear Algebra (Version 2.0.0)
2022
rWishart : Random Wishart Matrix Generation (Version 0.1.2)
2017
ramps : Bayesian Geostatistical Modeling with RAMPS (Version 0.6.18)
2007
randnet : Random Network Model Estimation, Selection and Parameter Tuning (Version 0.7)
2017
randomLCA : Random Effects Latent Class Analysis (Version 1.1-4)
2008
ranger : A Fast Implementation of Random Forests (Version 0.17.0)
2015
raptr : Representative and Adequate Prioritization Toolkit in R (Version 1.0.1)
2016
rare : Linear Model with Tree-Based Lasso Regularization for Rare Features (Version 0.1.1)
2018
rattle : Graphical User Interface for Data Science in R (Version 5.5.1)
2013
rbi.helpers : 'rbi' Helper Functions (Version 0.4.0)
2019
rbmi : Reference Based Multiple Imputation (Version 1.4.1)
2022
rbridge : Restricted Bridge Estimation (Version 1.0.2)
2019
rdomains : Get the Category of Content Hosted by a Domain (Version 0.2.1)
2016
readsparse : Read and Write Sparse Matrices in 'SVMLight' and 'LibSVM' Formats (Version 0.1.5-8)
2021
recipes : Preprocessing and Feature Engineering Steps for Modeling (Version 1.1.1)
2017
recometrics : Evaluation Metrics for Implicit-Feedback Recommender Systems (Version 0.1.6-3)
2021
recommenderlab : Lab for Developing and Testing Recommender Algorithms (Version 1.0.6)
2010
recosystem : Recommender System using Matrix Factorization (Version 0.5.1)
2014
reformulas : Machinery for Processing Random Effect Formulas (Version 0.4.0)
2024
refund : Regression with Functional Data (Version 0.1-37)
2010
registr : Curve Registration for Exponential Family Functional Data (Version 2.1.0)
2020
reglogit : Simulation-Based Regularized Logistic Regression (Version 1.2-7)
2011
regmedint : Regression-Based Causal Mediation Analysis with Interaction and Effect Modification Terms (Version 1.0.1)
2020
remiod : Reference-Based Multiple Imputation for Ordinal/Binary Response (Version 1.0.2)
2022
repolr : Repeated Measures Proportional Odds Logistic Regression (Version 3.4)
2012
retel : Regularized Exponentially Tilted Empirical Likelihood (Version 0.1.0)
2024
reticulate : Interface to 'Python' (Version 1.41.0)
2017
rgraph6 : Representing Graphs as 'graph6', 'digraph6' or 'sparse6' Strings (Version 2.0-4)
2022
rhype : Work with Hypergraphs in R (Version 0.3.0)
2021
riskParityPortfolio : Design of Risk Parity Portfolios (Version 0.2.2)
2018
riskclustr : Functions to Study Etiologic Heterogeneity (Version 0.4.1)
2019
rliger : Linked Inference of Genomic Experimental Relationships (Version 2.1.0)
2021
rmatio : Read and Write 'Matlab' Files (Version 0.19.0)
2014
rmcmc : Robust Markov Chain Monte Carlo Methods (Version 0.1.1)
2025
rmgarch : Multivariate GARCH Models (Version 1.3-9)
2013
rms : Regression Modeling Strategies (Version 7.0-0)
2009
rmumps : Wrapper for MUMPS Library (Version 5.2.1-30)
2015
rnndescent : Nearest Neighbor Descent Method for Approximate Nearest Neighbors (Version 0.1.6)
2023
rnnmf : Regularized Non-Negative Matrix Factorization (Version 0.3.0)
2024
robin : ROBustness in Network (Version 2.0.0)
2019
robustbase : Basic Robust Statistics (Version 0.99-4-1)
2006
robustbetareg : Robust Beta Regression (Version 0.3.0)
2022
robustlmm : Robust Linear Mixed Effects Models (Version 3.3-1)
2013
robustreg : Robust Regression Functions (Version 0.1-11)
2012
robustsur : Robust Estimation for Seemingly Unrelated Regression Models (Version 0.0-7)
2021
robustvarComp : Robust Estimation of Variance Component Models (Version 0.1-7)
2014
rodd : Optimal Discriminating Designs (Version 0.2-1)
2014
rope : Model Selection with FDR Control of Selected Variables (Version 1.0)
2017
round : Rounding to Decimal Digits (Version 0.21-0.2)
2020
rpql : Regularized PQL for Joint Selection in GLMMs (Version 0.8.1)
2016
rqPen : Penalized Quantile Regression (Version 4.1.3)
2014
rr2 : R2s for Regression Models (Version 1.1.1)
2018
rrMixture : Reduced-Rank Mixture Models (Version 0.1-2)
2022
rsetse : Strain Elevation Tension Spring Embedding (Version 0.5.0)
2020
rsmatch : Matching Methods for Time-Varying Observational Studies (Version 0.2.1)
2023
rsmatrix : Matrices for Repeat-Sales Price Indexes (Version 0.2.9)
2020
rsparse : Statistical Learning on Sparse Matrices (Version 0.5.3)
2019
rsq : R-Squared and Related Measures (Version 2.7)
2016
rstanarm : Bayesian Applied Regression Modeling via Stan (Version 2.32.1)
2016
rstan : R Interface to Stan (Version 2.32.6)
2015
rsvd : Randomized Singular Value Decomposition (Version 1.0.5)
2015
rviewgraph : Animated Graph Layout Viewer (Version 1.4.2)
2018
rwc : Random Walk Covariance Models (Version 1.12)
2017
rxode2 : Facilities for Simulating from ODE-Based Models (Version 3.0.4)
2022
sNPLS : NPLS Regression with L1 Penalization (Version 1.0.27)
2016
sRDA : Sparse Redundancy Analysis (Version 1.0.0)
2017
sSDR : Tools Developed for Structured Sufficient Dimension Reduction (sSDR) (Version 1.2.0)
2015
saeMSPE : Computing MSPE Estimates in Small Area Estimation (Version 1.4)
2022
saeRobust : Robust Small Area Estimation (Version 0.5.0)
2016
sageR : Applied Statistics for Economics and Management with R (Version 0.6.1)
2021
samc : Spatial Absorbing Markov Chains (Version 4.0.0)
2019
sanic : Solving Ax = b Nimbly in C++ (Version 0.0.2)
2020
sarsop : Approximate POMDP Planning Software (Version 0.6.15)
2020
sasfunclust : Sparse and Smooth Functional Clustering (Version 1.0.0)
2021
sbfc : Selective Bayesian Forest Classifier (Version 1.0.3)
2016
sbw : Stable Balancing Weights for Causal Inference and Missing Data (Version 1.1.9)
2019
scBSP : A Fast Tool for Single-Cell Spatially Variable Genes Identifications on Large-Scale Data (Version 1.0.0)
2024
scCATCH : Single Cell Cluster-Based Annotation Toolkit for Cellular Heterogeneity (Version 3.2.2)
2022
scCustomize : Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing (Version 3.0.1)
2022
scDHA : Single-Cell Decomposition using Hierarchical Autoencoder (Version 1.2.2)
2021
scGOclust : Measuring Cell Type Similarity with Gene Ontology in Single-Cell RNA-Seq (Version 0.2.1)
2023
scITD : Single-Cell Interpretable Tensor Decomposition (Version 1.0.4)
2021
scRNAstat : A Pipeline to Process Single Cell RNAseq Data (Version 0.1.1.1)
2021
scTenifoldKnk : In-Silico Knockout Experiments from Single-Cell Gene Regulatory Networks (Version 1.0.1)
2020
scTenifoldNet : Construct and Compare scGRN from Single-Cell Transcriptomic Data (Version 1.3)
2019
scUtils : Utility Functions for Single-Cell RNA Sequencing Data (Version 0.1.0)
2020
sca : Simple Component Analysis (Version 0.9-2)
2003
scalpel : Processes Calcium Imaging Data (Version 1.0.3)
2017
scam : Shape Constrained Additive Models (Version 1.2-18)
2012
sccore : Core Utilities for Single-Cell RNA-Seq (Version 1.0.5)
2020
scpi : Prediction Intervals for Synthetic Control Methods with Multiple Treated Units and Staggered Adoption (Version 3.0.0)
2022
scpoisson : Single Cell Poisson Probability Paradigm (Version 0.0.1)
2022
scregclust : Reconstructing the Regulatory Programs of Target Genes in scRNA-Seq Data (Version 0.2.0)
2024
scs : Splitting Conic Solver (Version 3.2.4)
2016
sctransform : Variance Stabilizing Transformations for Single Cell UMI Data (Version 0.4.1)
2018
sdcTable : Methods for Statistical Disclosure Control in Tabular Data (Version 0.32.6)
2009
sdmTMB : Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB' (Version 0.6.0)
2023
sdpdth : M-Estimator for Threshold Spatial Dynamic Panel Data Model (Version 0.2)
2021
sdwd : Sparse Distance Weighted Discrimination (Version 1.0.5)
2015
seededlda : Seeded Sequential LDA for Topic Modeling (Version 1.4.2)
2020
semfindr : Influential Cases in Structural Equation Modeling (Version 0.1.9)
2023
semnova : Latent Repeated Measures ANOVA (Version 0.1-6)
2020
sensory : Simultaneous Model-Based Clustering and Imputation via a Progressive Expectation-Maximization Algorithm (Version 1.1)
2014
seqHMM : Mixture Hidden Markov Models for Social Sequence Data and Other Multivariate, Multichannel Categorical Time Series (Version 1.2.6)
2015
serrsBayes : Bayesian Modelling of Raman Spectroscopy (Version 0.5-0)
2018
sf : Simple Features for R (Version 1.0-19)
2016
sfsmisc : Utilities from 'Seminar fuer Statistik' ETH Zurich (Version 1.1-20)
2004
sglasso : Lasso Method for RCON(V,E) Models (Version 1.2.6)
2014
sgs : Sparse-Group SLOPE: Adaptive Bi-Level Selection with FDR Control (Version 0.3.5)
2023
shapr : Prediction Explanation with Dependence-Aware Shapley Values (Version 1.0.2)
2020
sharpPen : Penalized Data Sharpening for Local Polynomial Regression (Version 2.0)
2021
sharpr2 : Estimating Regulatory Scores and Identifying ATAC-STARR Data (Version 1.1.1.0)
2017
signnet : Methods to Analyse Signed Networks (Version 1.0.5)
2020
silp : Conditional Process Analysis (CPA) via Structural Equation Modeling (SEM) Approach (Version 1.0.0)
2024
simExam : Generate Simulated Data for IRT-Enabled Exams (Version 1.0.0)
2019
simcausal : Simulating Longitudinal Data with Causal Inference Applications (Version 0.5.7)
2015
simdata : Generate Simulated Datasets (Version 0.4.1)
2024
simer : Data Simulation for Life Science and Breeding (Version 1.0.0)
2022
simplifyNet : Network Sparsification (Version 0.0.1)
2022
simstudy : Simulation of Study Data (Version 0.8.1)
2016
simtrial : Clinical Trial Simulation (Version 0.4.2)
2023
singleCellHaystack : A Universal Differential Expression Prediction Tool for Single-Cell and Spatial Genomics Data (Version 1.0.2)
2020
sirus : Stable and Interpretable RUle Set (Version 0.3.3)
2019
sirt : Supplementary Item Response Theory Models (Version 4.1-15)
2013
skedastic : Handling Heteroskedasticity in the Linear Regression Model (Version 2.0.2)
2020
sklarsomega : Measuring Agreement Using Sklar's Omega Coefficient (Version 3.0-2)
2018
skmeans : Spherical k-Means Clustering (Version 0.2-18)
2009
slam : Sparse Lightweight Arrays and Matrices (Version 0.1-55)
2009
slanter : Slanted Matrices and Ordered Clustering (Version 0.2-0)
2020
slimrec : Sparse Linear Method to Predict Ratings and Top-N Recommendations (Version 0.1.0)
2017
smallstuff : Dr. Small's Functions (Version 1.0.3)
2022
smam : Statistical Modeling of Animal Movements (Version 0.7.2)
2013
smile : Spatial Misalignment: Interpolation, Linkage, and Estimation (Version 1.0.5)
2022
smoothedLasso : A Framework to Smooth L1 Penalized Regression Operators using Nesterov Smoothing (Version 1.6)
2020
smurf : Sparse Multi-Type Regularized Feature Modeling (Version 1.1.7)
2018
snpReady : Preparing Genotypic Datasets in Order to Run Genomic Analysis (Version 0.9.6)
2017
soc.ca : Specific Correspondence Analysis for the Social Sciences (Version 0.8.0)
2014
softImpute : Matrix Completion via Iterative Soft-Thresholded SVD (Version 1.4-1)
2013
sommer : Solving Mixed Model Equations in R (Version 4.3.7)
2016
soptdmaeA : Sequential Optimal Designs for Two-Colour cDNA Microarray Experiments (Version 1.0.0)
2017
spANOVA : Analysis of Field Trials with Geostatistics & Spatial AR Models (Version 0.99.4)
2019
spBayes : Univariate and Multivariate Spatial-Temporal Modeling (Version 0.4-8)
2006
spGARCH : Spatial ARCH and GARCH Models (spGARCH) (Version 0.2.2)
2018
spaMM : Mixed-Effect Models, with or without Spatial Random Effects (Version 4.5.0)
2013
spam : SPArse Matrix (Version 2.11-1)
2007
sparseCov : Sparse Covariance Estimation Based on Thresholding (Version 0.0.1)
2024
sparseDFM : Estimate Dynamic Factor Models with Sparse Loadings (Version 1.0)
2023
sparseFLMM : Functional Linear Mixed Models for Irregularly or Sparsely Sampled Data (Version 0.4.1)
2017
sparseHessianFD : Numerical Estimation of Sparse Hessians (Version 0.3.3.7)
2012
sparseLRMatrix : Represent and Use Sparse + Low Rank Matrices (Version 0.1.0)
2021
sparseMVN : Multivariate Normal Functions for Sparse Covariance and Precision Matrices (Version 0.2.2)
2013
sparsegl : Sparse Group Lasso (Version 1.1.1)
2022
sparseinv : Computation of the Sparse Inverse Subset (Version 0.1.3)
2018
sparsenet : Fit Sparse Linear Regression Models via Nonconvex Optimization (Version 1.7)
2012
sparsestep : SparseStep Regression (Version 1.0.1)
2017
sparsesvd : Sparse Truncated Singular Value Decomposition (from 'SVDLIBC') (Version 0.2-2)
2016
sparsevctrs : Sparse Vectors for Use in Data Frames (Version 0.2.0)
2024
sparsio : I/O Operations with Sparse Matrices (Version 1.0.1)
2017
spatgraphs : Graph Edge Computations for Spatial Point Patterns (Version 3.4)
2007
spatialEco : Spatial Analysis and Modelling Utilities (Version 2.0-2)
2015
spatialprobit : Spatial Probit Models (Version 1.0.4)
2012
spatialreg : Spatial Regression Analysis (Version 1.3-6)
2019
spatstat.Knet : Extension to 'spatstat' for Large Datasets on a Linear Network (Version 3.1-2)
2019
spatstat.data : Datasets for 'spatstat' Family (Version 3.1-4)
2017
spatstat.explore : Exploratory Data Analysis for the 'spatstat' Family (Version 3.3-4)
2022
spatstat.linnet : Linear Networks Functionality of the 'spatstat' Family (Version 3.2-5)
2021
spatstat.model : Parametric Statistical Modelling and Inference for the 'spatstat' Family (Version 3.3-4)
2022
spatstat.sparse : Sparse Three-Dimensional Arrays and Linear Algebra Utilities (Version 3.1-0)
2020
spatsurv : Bayesian Spatial Survival Analysis with Parametric Proportional Hazards Models (Version 2.0-1)
2014
spdep : Spatial Dependence: Weighting Schemes, Statistics (Version 1.3-10)
2002
speakeasyR : Fast and Robust Multi-Scale Graph Clustering (Version 0.1.4)
2024
speedyBBT : Efficient Bayesian Inference for the Bradley–Terry Model (Version 1.0)
2024
speedglm : Fitting Linear and Generalized Linear Models to Large Data Sets (Version 0.3-5)
2012
sphet : Estimation of Spatial Autoregressive Models with and without Heteroskedastic Innovations (Version 2.1-1)
2010
spldv : Spatial Models for Limited Dependent Variables (Version 0.1.3)
2022
splm : Econometric Models for Spatial Panel Data (Version 1.6-5)
2012
spmodel : Spatial Statistical Modeling and Prediction (Version 0.9.0)
2022
spmoran : Fast Spatial and Spatio-Temporal Regression using Moran Eigenvectors (Version 0.3.3)
2017
spqdep : Testing for Spatial Independence of Cross-Sectional Qualitative Data (Version 0.1.3.5)
2022
spreadr : Simulating Spreading Activation in a Network (Version 0.2.0)
2018
spsur : Spatial Seemingly Unrelated Regression Models (Version 1.0.2.5)
2019
squeezy : Group-Adaptive Elastic Net Penalised Generalised Linear Models (Version 1.1-1)
2021
srvyr : 'dplyr'-Like Syntax for Summary Statistics of Survey Data (Version 1.3.0)
2016
ssMRCD : Spatially Smoothed MRCD Estimator (Version 1.1.0)
2023
ssMutPA : Single-Sample Mutation-Based Pathway Analysis (Version 0.1.2)
2024
ssfa : Spatial Stochastic Frontier Analysis (Version 1.2.2)
2015
stR : Seasonal Trend Decomposition Using Regression (Version 0.7)
2016
stabledist : Stable Distribution Functions (Version 0.7-2)
2012
stabm : Stability Measures for Feature Selection (Version 1.2.2)
2019
stan4bart : Bayesian Additive Regression Trees with Stan-Sampled Parametric Extensions (Version 0.0-10)
2021
starm : Spatio-Temporal Autologistic Regression Model (Version 0.1.0)
2020
starnet : Stacked Elastic Net (Version 0.0.7)
2020
statcomp : Statistical Complexity and Information Measures for Time Series Analysis (Version 0.1.0)
2016
statgenHTP : High Throughput Phenotyping (HTP) Data Analysis (Version 1.0.7)
2021
statgenIBD : Calculation of IBD Probabilities (Version 1.0.8)
2021
statnet.common : Common R Scripts and Utilities Used by the Statnet Project Software (Version 4.11.0)
2013
stcos : Space-Time Change of Support (Version 0.3.1)
2019
stelfi : Hawkes and Log-Gaussian Cox Point Processes Using Template Model Builder (Version 1.0.1)
2022
stfit : Spatio-Temporal Functional Imputation Tool (Version 0.99.9)
2020
stm : Estimation of the Structural Topic Model (Version 1.3.7)
2014
stocc : Fit a Spatial Occupancy Model via Gibbs Sampling (Version 1.31)
2012
strand : A Framework for Investment Strategy Simulation (Version 0.2.0)
2020
sts : Estimation of the Structural Topic and Sentiment-Discourse Model for Text Analysis (Version 1.4)
2024
stylest2 : Estimating Speakers of Texts (Version 0.1)
2024
success : Survival Control Charts Estimation Software (Version 1.1.0)
2022
sumFREGAT : Fast Region-Based Association Tests on Summary Statistics (Version 1.2.5)
2018
superbiclust : Generating Robust Biclusters from a Bicluster Set (Ensemble Biclustering) (Version 1.2)
2013
surbayes : Bayesian Analysis of Seemingly Unrelated Regression Models (Version 0.1.2)
2020
sureLDA : A Novel Multi-Disease Automated Phenotyping Method for the EHR (Version 0.1.0-1)
2020
surrosurv : Evaluation of Failure Time Surrogate Endpoints in Individual Patient Data Meta-Analyses (Version 1.1.26)
2016
surveillance : Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena (Version 1.24.1)
2005
survey : Analysis of Complex Survey Samples (Version 4.4-2)
2003
surveyvoi : Survey Value of Information (Version 1.0.6)
2021
survival : Survival Analysis (Version 3.8-3)
2001
survivalsvm : Survival Support Vector Analysis (Version 0.0.5)
2017
susieR : Sum of Single Effects Linear Regression (Version 0.12.35)
2021
svrep : Tools for Creating, Updating, and Analyzing Survey Replicate Weights (Version 0.7.0)
2022
svs : Tools for Semantic Vector Spaces (Version 3.1.1)
2015
svydiags : Regression Model Diagnostics for Survey Data (Version 0.7)
2018
svylme : Linear Mixed Models for Complex Survey Data (Version 1.5-1)
2024
symphony : Efficient and Precise Single-Cell Reference Atlas Mapping (Version 0.1.1)
2021
synlik : Synthetic Likelihood Methods for Intractable Likelihoods (Version 0.1.6)
2014
systemfit : Estimating Systems of Simultaneous Equations (Version 1.1-30)
2002
syt : Young Tableaux (Version 0.5.0)
2018
tableone : Create 'Table 1' to Describe Baseline Characteristics with or without Propensity Score Weights (Version 0.13.2)
2014
tabnet : Fit 'TabNet' Models for Classification and Regression (Version 0.6.0)
2021
tcl : Testing in Conditional Likelihood Context (Version 0.2.1)
2019
tea : Threshold Estimation Approaches (Version 1.1)
2017
templateICAr : Estimate Brain Networks and Connectivity with ICA and Empirical Priors (Version 0.9.1)
2022
tensorTS : Factor and Autoregressive Models for Tensor Time Series (Version 1.0.2)
2021
tern.mmrm : Tables and Graphs for Mixed Models for Repeated Measures (MMRM) (Version 0.3.2)
2023
tern.rbmi : Create Interface for 'RBMI' and 'tern' (Version 0.1.5)
2024
text2map : R Tools for Text Matrices, Embeddings, and Networks (Version 0.2.0)
2021
text2vec : Modern Text Mining Framework for R (Version 0.6.4)
2016
textTinyR : Text Processing for Small or Big Data Files (Version 1.1.8)
2017
textir : Inverse Regression for Text Analysis (Version 2.0-5)
2011
textmineR : Functions for Text Mining and Topic Modeling (Version 3.0.5)
2015
textplot : Text Plots (Version 0.2.2)
2020
textpress : A Lightweight and Versatile NLP Toolkit (Version 1.0.0)
2024
textrecipes : Extra 'Recipes' for Text Processing (Version 1.0.7)
2018
tglkmeans : Efficient Implementation of K-Means++ Algorithm (Version 0.5.5)
2022
tidySEM : Tidy Structural Equation Modeling (Version 0.2.8)
2020
tidylda : Latent Dirichlet Allocation Using 'tidyverse' Conventions (Version 0.0.5)
2021
tidyseurat : Brings Seurat to the Tidyverse (Version 0.8.0)
2020
tidytext : Text Mining using 'dplyr', 'ggplot2', and Other Tidy Tools (Version 0.4.2)
2019
tiledb : Modern Database Engine for Complex Data Based on Multi-Dimensional Arrays (Version 0.30.2)
2020
tmvtnorm : Truncated Multivariate Normal and Student t Distribution (Version 1.6)
2009
topicmodels.etm : Topic Modelling in Embedding Spaces (Version 0.1.0)
2021
topics : Creating and Significance Testing Language Features for Visualisation (Version 0.21.0)
2024
tram : Transformation Models (Version 1.2-1)
2018
tramME : Transformation Models with Mixed Effects (Version 1.0.7)
2020
tramnet : Penalized Transformation Models (Version 0.0-8)
2020
transforEmotion : Sentiment Analysis for Text, Image and Video using Transformer Models (Version 0.1.5)
2022
treeDA : Tree-Based Discriminant Analysis (Version 0.0.5)
2017
treestats : Phylogenetic Tree Statistics (Version 1.70.5)
2024
triplesmatch : Match Triples Consisting of Two Controls and a Treated Unit or Vice Versa (Version 1.1.0)
2023
triversity : Diversity Measures on Tripartite Graphs (Version 1.0)
2017
trtf : Transformation Trees and Forests (Version 0.4-3)
2018
trustOptim : Trust Region Optimization for Nonlinear Functions with Sparse Hessians (Version 0.8.7.3)
2012
tsDyn : Nonlinear Time Series Models with Regime Switching (Version 11.0.5.2)
2006
tsapp : Time Series, Analysis and Application (Version 1.0.4)
2020
tscopula : Time Series Copula Models (Version 0.3.9)
2021
tscount : Analysis of Count Time Series (Version 1.4.3)
2015
tseriesTARMA : Analysis of Nonlinear Time Series Through Threshold Autoregressive Moving Average Models (TARMA) Models (Version 0.5-1)
2023
tsrobprep : Robust Preprocessing of Time Series Data (Version 0.3.2)
2020
ttservice : A Service for Tidy Transcriptomics Software Suite (Version 0.4.1)
2021
tukeytrend : Tukeys Trend Test via Multiple Marginal Models (Version 0.7)
2017
tvR : Total Variation Regularization (Version 0.3.2)
2017
tvReg : Time-Varying Coefficient for Single and Multi-Equation Regressions (Version 0.5.9)
2017
ubms : Bayesian Models for Data from Unmarked Animals using 'Stan' (Version 1.2.7)
2021
udpipe : Tokenization, Parts of Speech Tagging, Lemmatization and Dependency Parsing with the 'UDPipe' 'NLP' Toolkit (Version 0.8.11)
2017
ui : Uncertainty Intervals and Sensitivity Analysis for Missing Data (Version 0.1.1)
2019
umap : Uniform Manifold Approximation and Projection (Version 0.2.10.0)
2018
umx : Structural Equation Modeling and Twin Modeling in R (Version 4.21.0)
2015
ungroup : Penalized Composite Link Model for Efficient Estimation of Smooth Distributions from Coarsely Binned Data (Version 1.4.4)
2018
unmarked : Models for Data from Unmarked Animals (Version 1.5.0)
2010
useful : A Collection of Handy, Useful Functions (Version 1.2.6.1)
2011
uwot : The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality Reduction (Version 0.2.3)
2019
vagam : Variational Approximations for Generalized Additive Models (Version 1.1)
2019
varTestnlme : Variance Components Testing for Linear and Nonlinear Mixed Effects Models (Version 1.3.5)
2020
varbvs : Large-Scale Bayesian Variable Selection Using Variational Methods (Version 2.6-10)
2012
varjmcm : Estimations for the Covariance of Estimated Parameters in Joint Mean-Covariance Models (Version 0.1.1)
2018
vglmer : Variational Inference for Hierarchical Generalized Linear Models (Version 1.0.6)
2022
visa : Vegetation Imaging Spectroscopy Analyzer (Version 0.1.0)
2021
visaOTR : Valid Improved Sparsity A-Learning for Optimal Treatment Decision (Version 0.1.0)
2022
visreg : Visualization of Regression Models (Version 2.7.0)
2012
voi : Expected Value of Information (Version 1.0.3)
2023
votesys : Voting Systems, Instant-Runoff Voting, Borda Method, Various Condorcet Methods (Version 0.1.1)
2018
vrnmf : Volume-Regularized Structured Matrix Factorization (Version 1.0.2)
2021
vsmi : Variable Selection for Multiple Imputed Data (Version 0.1.0)
2024
vsp : Vintage Sparse PCA for Semi-Parametric Factor Analysis (Version 0.1.2)
2022
wactor : Word Factor Vectors (Version 0.0.1)
2019
waydown : Computation of Approximate Potentials for Weakly Non-Gradient Fields (Version 1.1.0)
2021
waywiser : Ergonomic Methods for Assessing Spatial Models (Version 0.6.2)
2022
wdnet : Weighted and Directed Networks (Version 1.2.3)
2022
wfe : Weighted Linear Fixed Effects Regression Models for Causal Inference (Version 1.9.1)
2011
widyr : Widen, Process, then Re-Tidy Data (Version 0.1.5)
2017
winputall : Variable Input Allocation Among Crops (Version 1.0.1)
2024
wordmap : Feature Extraction and Document Classification with Noisy Labels (Version 0.9.2)
2024
wordspace : Distributional Semantic Models in R (Version 0.2-8)
2016
wordvector : Word and Document Vector Models (Version 0.2.0)
2024
workflows : Modeling Workflows (Version 1.2.0)
2019
xLLiM : High Dimensional Locally-Linear Mapping (Version 2.3)
2016
xgboost : Extreme Gradient Boosting (Version 1.7.8.1)
2014
xrf : eXtreme RuleFit (Version 0.2.2)
2019
xrnet : Hierarchical Regularized Regression (Version 1.0.0)
2020
xxdi : Calculate Expertise Indices (Version 1.2.3)
2024
ycevo : Nonparametric Estimation of the Yield Curve Evolution (Version 0.2.1)
2022
zenplots : Zigzag Expanded Navigation Plots (Version 1.0.6)
2016
Showing 1-1727 of 1727
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