Referenced by ⇅
Year
AdaptiveSparsity : Adaptive Sparsity Models (Version 1.6)
2013
ADMMnet : Regularized Model with Selecting the Number of Non-Zeros (Version 0.1.1)
2015
APML0 : Augmented and Penalized Minimization Method L0 (Version 0.10)
2017
BacArena : Modeling Framework for Cellular Communities in their
Environments (Version 1.8.2)
2015
bastah : Big Data Statistical Analysis for High-Dimensional Models (Version 1.0.7)
2016
BayesMRA : Bayesian Multi-Resolution Gaussian Process Approximations (Version 1.0.0)
2020
BCE : Bayesian Composition Estimator: Estimating Sample (Taxonomic)
Composition from Biomarker Data (Version 2.2.0)
2008
beam : Fast Bayesian Inference in Large Gaussian Graphical Models (Version 2.0.2)
2018
corpus : Text Corpus Analysis (Version 0.10.2)
2017
DCD : Differential Community Detection in Paired Biological Networks (Version 0.1.0)
2017
dcGOR : Analysis of Ontologies and Protein Domain Annotations (Version 1.0.6)
2014
diffusr : Network Diffusion Algorithms (Version 0.1.4)
2016
dnet : Integrative Analysis of Omics Data in Terms of Network,
Evolution and Ontology (Version 1.1.7)
2014
DOBAD : Analysis of Discretely Observed Linear
Birth-and-Death(-and-Immigration) Markov Chains (Version 1.0.6)
2011
DUBStepR : Correlation-Based Feature Selection for Single-Cell RNA
Sequencing Data (Version 1.2.0)
2021
epistasis : Detecting Epistatic Selection with Partially Observed Genotype
Data (Version 0.0.1-1)
2016
fastclime : A Fast Solver for Parameterized LP Problems, Constrained L1
Minimization Approach to Sparse Precision Matrix Estimation and
Dantzig Selector (Version 1.4.1.1)
2013
fastCorrDiff : Fast Differential Correlation Matrix Screening (Version 0.5)
2021
geonet : Intensity Estimation on Geometric Networks with Penalized
Splines (Version 0.7.3)
2021
GrassmannOptim : Grassmann Manifold Optimization (Version 2.0.1)
2009
gwer : Geographically Weighted Elliptical Regression (Version 3.0)
2019
HCV : Hierarchical Clustering from Vertex-Links (Version 1.2.0)
2022
hergm : Hierarchical Exponential-Family Random Graph Models (Version 4.1-10)
2010
HiCfeat : Multiple Logistic Regression for 3D Chromatin Domain Border
Analysis (Version 1.4)
2015
hierarchicalDS : Functions to Perform Hierarchical Analysis of Distance Sampling
Data (Version 3.0)
2012
hmlasso : Lasso with High Missing Rate (Version 0.0.1)
2019
htmcglm : Hypothesis Testing for McGLMs (Version 0.0.1)
2022
IFAA : Robust Inference for Absolute Abundance in Microbiome Analysis (Version 1.1.2)
2020
iilasso : Independently Interpretable Lasso (Version 0.0.2)
2018
ITRSelect : Variable Selection for Optimal Individualized Dynamic Treatment
Regime (Version 1.0-1)
2018
jlsm : Joint Latent Space Model for Social Networks with Multivariate
Attributes (Version 0.1.0)
2021
L1mstate : L1-Regularized Multi-State Models (Version 1.0.1)
2020
lmvar : Linear Regression with Non-Constant Variances (Version 1.5.2)
2017
LRQMM : Fitting Linear Quantile Regression Mixed Models with
Relationship Matrix (Version 1.2.3)
2019
MedSurvey : Linear Mediation Analysis for Complex Surveys Using Balanced
Repeated Replication (Version 1.1.1.3.0)
2019
metaMix : Bayesian Mixture Analysis for Metagenomic Community Profiling (Version 0.3)
2014
MoMPCA : Inference and Clustering for Mixture of Multinomial Principal
Component Analysis (Version 1.0.1)
2020
msaeOB : Optimum Benchmarking for Multivariate Small Area Estimation (Version 0.1.0)
2022
msaeRB : Ratio Benchmarking for Multivariate Small Area Estimation (Version 0.2.1)
2021
msda : Multi-Class Sparse Discriminant Analysis (Version 1.0.3)
2014
msgl : Multinomial Sparse Group Lasso (Version 2.3.9)
2013
mumm : Multiplicative Mixed Models using the Template Model Builder (Version 0.2.1)
2018
netchain : Inferring Causal Effects on Collective Outcomes under
Interference (Version 0.2.0)
2019
occTest : Characterizing and Filtering Species Occurrence Data (Version 0.1.1)
2022
penDvine : Flexible Pair-Copula Estimation in D-Vines using Bivariate
Penalized Splines (Version 0.2.4)
2012
pergola : Toolbox for Polyploid Genetic Data (Version 1.0)
2016
psr : Functions for Analyzing Performance Science Data (Version 0.1.0)
2021
ptf : Probit Tensor Factorization (Version 0.0.1)
2021
QPmin : Linearly Constrained Indefinite Quadratic Program Solver (Version 0.5-1)
2021
qut : Quantile Universal Threshold (Version 2.2)
2015
ragt2ridges : Ridge Estimation of Vector Auto-Regressive (VAR) Processes (Version 0.3.4)
2016
rbenvo : Built Environment Objects (Version 1.0.5)
2020
rcage : Regionalization of Multiscale Spatial Processes (Version 1.2)
2021
REREFACT : Reordering and/or Reflecting Factors for Simulation Studies with
Exploratory Factor Analysis (Version 1.0)
2016
rescue : Bootstrap Imputation for Single-Cell RNA-Seq Data (Version 1.0.3)
2020
RSarules : Random Sampling Association Rules from a Transaction Dataset (Version 1.0)
2016
rWind : Download, Edit and Include Wind and Sea Currents Data in
Ecological and Evolutionary Analysis (Version 1.1.7)
2016
scPOP : Metrics for Benchmarking scRNA-Seq Batch Correction (Version 0.1.0)
2021
scTEP : Single-Cell Trajectory Inference using Ensemble Pseudotimes (Version 0.1.0)
2022
sglOptim : Generic Sparse Group Lasso Solver (Version 1.3.8)
2013
sparsebnUtils : Utilities for Learning Sparse Bayesian Networks (Version 0.0.8)
2016
spatstat.core : Core Functionality of the "spatstat" Family (Version 2.4-4)
2021
spflow : Spatial Econometric Interaction Models (Version 0.1.0)
2021
spqdep : Testing for Spatial Independence of Qualitative Data in Cross
Section (Version 0.1.2)
2022
sptm : SemiParametric Transformation Model Methods (Version 2019.11-25)
2014
SSN : Spatial Modeling on Stream Networks (Version 1.1.17)
2013
StratifiedSampling : Different Methods for Stratified Sampling (Version 0.4.1)
2021
stylest : Estimating Speaker Style Distinctiveness (Version 0.2.0)
2018
surf : Survey-Based Gross Flows Estimation (Version 1.0.0)
2021
survtmle : Compute Targeted Minimum Loss-Based Estimates in Right-Censored
Survival Settings (Version 1.1.1)
2017
SwarmSVM : Ensemble Learning Algorithms Based on Support Vector Machines (Version 0.1-7)
2015
sybil : Efficient Constrained Based Modelling (Version 2.2.0)
2012
sybilcycleFreeFlux : Cycle-Free Flux Balance Analysis (CycleFreeFlux) (Version 2.0.2)
2014
tensorr : Sparse Tensors in R (Version 0.1.1)
2017
treemisc : Data Sets and Functions to Accompany "Tree-Based Methods for
Statistical Learning in R" (Version 0.0.1)
2022
ttTensor : Tensor-Train Decomposition (Version 1.0.1)
2019
vennLasso : Variable Selection for Heterogeneous Populations (Version 0.1.6)
2017
xtreg2way : Feasible Estimation of the Two-Way Fixed Effect Model (Version 1.0.0)
2020
DLSSM : Dynamic Logistic State Space Prediction Model (Version 0.1.0)
2022
Qardl : Quantile Autoregressive Distributed Lag Model (Version 0.1.1)
2022
glmmrMCML : Markov Chain Monte Carlo Maximum Likelihood for Generalised
Linear Mixed Models (Version 0.2.2)
2023
gsdensity : Density-Based Gene Set Specificity Evaluation (Version 0.1.2)
2023
HDPenReg : (Version )
0
morf : Modified Ordered Random Forest (Version 1.0.0)
2023
graphseg : Segmentation of Graph-Based Signals (Version 0.1.1)
2023
GSNA : Gene Set Networking Analysis Package (Version 0.1.4.2)
2024
WSGeometry : Geometric Tools Based on Balanced/Unbalanced Optimal Transport (Version 1.2.1)
2021
RAZIAD : Regression Analysis of Zero-Inflated and Zero-Altered(Hurdle) Data (Version 0.0.1)
2024
cate : High Dimensional Factor Analysis and Confounder Adjusted Testing and Estimation (Version 1.1.1)
2015
loe : Local Ordinal Embedding (Version 1.1)
2014
fwildclusterboot : Fast Wild Cluster Bootstrap Inference for Linear Models (Version 0.13.0)
2021
hdqr : Fast Algorithm for Penalized Quantile Regression (Version 1.0.0)
2024
hdsvm : Fast Algorithm for Support Vector Machine (Version 1.0.0)
2024
CARlasso : Conditional Autoregressive LASSO (Version 0.1.2)
2021
VAJointSurv : Variational Approximation for Joint Survival and Marker Models (Version 0.1.0)
2022
AROC : Covariate-Adjusted Receiver Operating Characteristic Curve Inference (Version 1.0-4)
2018
gfilmm : Generalized Fiducial Inference for Normal Linear Mixed Models (Version 2.0.5)
2020
BOSO : Bilevel Optimization Selector Operator (Version 1.0.4)
2021
diproperm : Conduct Direction-Projection-Permutation Tests and Display Plots (Version 0.2.0)
2020
fastMatMR : High-Performance Matrix Market File Operations (Version 1.2.5)
2023
BayesMassBal : Bayesian Data Reconciliation of Separation Processes (Version 1.1.0)
2020
digitalDLSorteR : Deconvolution of Bulk RNA-Seq Data Based on Deep Learning (Version 1.1.0)
2021
epoc : Endogenous Perturbation Analysis of Cancer (Version 0.2.6-1.1)
2011
CRF : Conditional Random Fields (Version 0.4-3)
2014
Corbi : Collection of Rudimentary Bioinformatics Tools (Version 0.6-2)
2016
dfr : Dual Feature Reduction for SGL (Version 0.1.0)
2024
sgs : Sparse-Group SLOPE: Adaptive Bi-Level Selection with FDR Control (Version 0.3.0)
2023
BBSSL : Bayesian Bootstrap Spike-and-Slab LASSO (Version 0.1.0)
2021
WpProj : Linear p-Wasserstein Projections (Version 0.2.1)
2024
pulsar : Parallel Utilities for Lambda Selection along a Regularization Path (Version 0.3.11)
2016
pvclass : P-Values for Classification (Version 1.4)
2010
pwlmm : PWIGLS for Two-Level Multivariate and Multilevel Linear Models (Version 1.1.1)
2022
qape : Quantile of Absolute Prediction Errors (Version 2.1)
2020
qgraph : Graph Plotting Methods, Psychometric Data Visualization and Graphical Model Estimation (Version 1.9.8)
2011
qlcMatrix : Utility Sparse Matrix Functions for Quantitative Language Comparison (Version 0.9.8)
2014
qpcR : Modelling and Analysis of Real-Time PCR Data (Version 1.4-1)
2008
ACV : Optimal Out-of-Sample Forecast Evaluation and Testing under Stationarity (Version 1.0.2)
2022
ADDT : Analysis of Accelerated Destructive Degradation Test Data (Version 2.0)
2014
ADMM : Algorithms using Alternating Direction Method of Multipliers (Version 0.3.3)
2017
AGHmatrix : Relationship Matrices for Diploid and Autopolyploid Species (Version 2.1.4)
2018
AGPRIS : AGricultural PRoductivity in Space (Version 2.0)
2020
AHM : Additive Heredity Model: Method for the Mixture-of-Mixtures Experiments (Version 1.0.1)
2019
AICcmodavg : Model Selection and Multimodel Inference Based on (Q)AIC(c) (Version 2.3-3)
2009
ARGOS : Automatic Regression for Governing Equations (ARGOS) (Version 0.1.1)
2023
ASRgenomics : Complementary Genomic Functions (Version 1.1.4)
2022
AVGAS : A Variable Selection using Genetic Algorithms (Version 0.1.0)
2023
AgreementInterval : Agreement Interval of Two Measurement Methods (Version 0.1.1)
2018
ArCo : Artificial Counterfactual Package (Version 0.3-1)
2017
BANAM : Bayesian Analysis of the Network Autocorrelation Model (Version 0.2.1)
2024
BCA1SG : Block Coordinate Ascent with One-Step Generalized Rosen Algorithm (Version 0.1.0)
2019
BCEA : Bayesian Cost Effectiveness Analysis (Version 2.4.6)
2012
BFF : Bayes Factor Functions (Version 4.2.1)
2022
BGmisc : An R Package for Extended Behavior Genetics Analysis (Version 1.3.2)
2020
BGVAR : Bayesian Global Vector Autoregressions (Version 2.5.8)
2020
BLPestimatoR : Performs a BLP Demand Estimation (Version 0.3.4)
2017
BOSSreg : Best Orthogonalized Subset Selection (BOSS) (Version 0.2.0)
2019
BSW : Fitting a Log-Binomial Model using the Bekhit-Schöpe-Wagenpfeil (BSW) Algorithm (Version 0.1.1)
2020
BTLLasso : Modelling Heterogeneity in Paired Comparison Data (Version 0.1-13)
2015
BTYD : Implementing BTYD Models with the Log Sum Exp Patch (Version 2.4.3)
2012
BayesFactor : Computation of Bayes Factors for Common Designs (Version 0.9.12-4.7)
2012
BayesGP : Efficient Implementation of Gaussian Process in Bayesian Hierarchical Models (Version 0.1.3)
0
BayesLN : Bayesian Inference for Log-Normal Data (Version 0.2.10)
2020
BayesNSGP : Bayesian Analysis of Non-Stationary Gaussian Process Models (Version 0.1.2)
2019
BayesS5 : Bayesian Variable Selection Using Simplified Shotgun Stochastic Search with Screening (S5) (Version 1.41)
2017
BayesSUR : Bayesian Seemingly Unrelated Regression Models in High-Dimensional Settings (Version 2.2-1)
2019
BayesSampling : Bayes Linear Estimators for Finite Population (Version 1.1.0)
2020
BayesfMRI : Spatial Bayesian Methods for Task Functional MRI Studies (Version 0.3.11)
2023
BayesianFactorZoo : Bayesian Solutions for the Factor Zoo: We Just Ran Two Quadrillion Models (Version 0.0.0.3)
2023
BayesianTools : General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics (Version 0.1.8)
2017
Bayesiantreg : Bayesian t Regression for Modeling Mean and Scale Parameters (Version 1.0.1)
2022
BeSS : Best Subset Selection in Linear, Logistic and CoxPH Models (Version 2.0.4)
2017
Bergm : Bayesian Exponential Random Graph Models (Version 5.0.7)
2009
BeviMed : Bayesian Evaluation of Variant Involvement in Mendelian Disease (Version 5.10)
2016
BiDAG : Bayesian Inference for Directed Acyclic Graphs (Version 2.1.4)
2017
BigQuic : Big Quadratic Inverse Covariance Estimation (Version 1.1-13)
2016
BinNonNor : Data Generation with Binary and Continuous Non-Normal Components (Version 1.5.3)
2014
BinNor : Simultaneous Generation of Multivariate Binary and Normal Variates (Version 2.3.3)
2011
BinOrdNonNor : Concurrent Generation of Binary, Ordinal and Continuous Data (Version 1.5.2)
2015
BlockCov : Estimation of Large Block Covariance Matrices (Version 0.1.1)
2018
BlockMissingData : Integrating Multi-Source Block-Wise Missing Data in Model Selection (Version 0.1.0)
2023
Boptbd : Bayesian Optimal Block Designs (Version 1.0.5)
2020
Brobdingnag : Very Large Numbers in R (Version 1.2-9)
2007
CAESAR.Suite : CAESAR: a Cross-Technology and Cross-Resolution Framework for Spatial Omics Annotation (Version 0.1.0)
2024
CAMML : Cell-Typing using Variance Adjusted Mahalanobis Distances with Multi-Labeling (Version 1.0.0)
2021
CDatanet : Econometrics of Network Data (Version 2.2.0)
2021
CEGO : Combinatorial Efficient Global Optimization (Version 2.4.3)
2015
CIAAWconsensus : Isotope Ratio Meta-Analysis (Version 1.3)
2016
CLA : Critical Line Algorithm in Pure R (Version 0.96-3)
2018
CLVTools : Tools for Customer Lifetime Value Estimation (Version 0.11.1)
2020
CMShiny : Interactive Document for Working with Confusion Matrix (Version 0.1.0)
2019
CNVScope : A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization (Version 3.7.2)
2018
COMBO : Correcting Misclassified Binary Outcomes in Association Studies (Version 1.2.0)
2023
COMMA : Correcting Misclassified Mediation Analysis (Version 1.1.0)
2024
CR2 : Compute Cluster Robust Standard Errors with Degrees of Freedom Adjustments (Version 0.2.1)
2022
CRMetrics : Cell Ranger Output Filtering and Metrics Visualization (Version 0.3.2)
2022
CRTgeeDR : Doubly Robust Inverse Probability Weighted Augmented GEE Estimator (Version 2.0.1)
2016
CRTspat : Workflow for Cluster Randomised Trials with Spillover (Version 1.3.0)
2023
CVST : Fast Cross-Validation via Sequential Testing (Version 0.2-3)
2012
CVXR : Disciplined Convex Optimization (Version 1.0-15)
2017
CalibrationCurves : Calibration Performance (Version 2.0.3)
2022
CatEncoders : Encoders for Categorical Variables (Version 0.1.1)
2016
CausalMBSTS : MBSTS Models for Causal Inference and Forecasting (Version 0.1.1)
2020
ChainLadder : Statistical Methods and Models for Claims Reserving in General Insurance (Version 0.2.19)
2007
ChoiceModelR : Choice Modeling in R (Version 1.3.1)
2012
ClimMobTools : API Client for the 'ClimMob' Platform (Version 1.2)
2019
CliquePercolation : Clique Percolation for Networks (Version 0.4.0)
2019
ClustAssess : Tools for Assessing Clustering (Version 0.3.0)
2021
CoSMoS : Complete Stochastic Modelling Solution (Version 2.1.0)
2019
CodataGS : Genomic Prediction Using SNP Codata (Version 1.43)
2019
CollocInfer : Collocation Inference for Dynamic Systems (Version 1.0.5)
2010
CommKern : Network-Based Communities and Kernel Machine Methods (Version 1.0.1)
2022
CompMix : A Comprehensive Toolkit for Environmental Mixtures Analysis ('CompMix') (Version 0.1.0)
2024
CompareCausalNetworks : Interface to Diverse Estimation Methods of Causal Networks (Version 0.2.6.2)
2015
Compositional : Compositional Data Analysis (Version 7.1)
2016
CopulaInference : Estimation and Goodness-of-Fit of Copula-Based Models with Arbitrary Distributions (Version 0.5.0)
2023
Countr : Flexible Univariate Count Models Based on Renewal Processes (Version 3.5.8)
2016
CovCombR : Combine Partial Covariance / Relationship Matrices (Version 1.0)
2020
CovTools : Statistical Tools for Covariance Analysis (Version 0.5.4)
2017
Crossover : Analysis and Search of Crossover Designs (Version 0.1-22)
2014
Cyclops : Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis (Version 3.4.1)
2016
CytoSimplex : Simplex Visualization of Cell Fate Similarity in Single-Cell Data (Version 0.1.1)
2023
DAISIE : Dynamical Assembly of Islands by Speciation, Immigration and Extinction (Version 4.4.1)
2015
DAMOCLES : Dynamic Assembly Model of Colonization, Local Extinction and Speciation (Version 2.3)
2014
DCLEAR : Distance Based Cell Lineage Reconstruction (Version 1.0.13)
2021
DDD : Diversity-Dependent Diversification (Version 5.2.2)
2012
DDL : Doubly Debiased Lasso (DDL) (Version 1.0.2)
2022
DHARMa : Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models (Version 0.4.7)
2016
DICEM : Directness and Intensity of Conflict Expression (Version 0.1.0)
2024
DIFM : Dynamic ICAR Spatiotemporal Factor Models (Version 1.0)
2024
DImodelsMulti : Fit Multivariate Diversity-Interactions Models with Repeated Measures (Version 1.1.1)
2024
DNAmixturesLite : Statistical Inference for Mixed Traces of DNA (Lite-Version) (Version 0.0-1)
2023
DNMF : Discriminant Non-Negative Matrix Factorization (Version 1.4.2)
2015
DPQmpfr : DPQ (Density, Probability, Quantile) Distribution Computations using MPFR (Version 0.3-3)
2020
DR.SC : Joint Dimension Reduction and Spatial Clustering (Version 3.4)
2021
DRR : Dimensionality Reduction via Regression (Version 0.0.4)
2016
DRaWR : Discriminative Random Walk with Restart (Version 1.0.3)
2016
DSAM : Data Splitting Algorithms for Model Developments (Version 1.0.2)
2023
DTRlearn2 : Statistical Learning Methods for Optimizing Dynamic Treatment Regimes (Version 1.1)
2019
DWDLargeR : Fast Algorithms for Large Scale Generalized Distance Weighted Discrimination (Version 0.2-0)
2018
DWLasso : Degree Weighted Lasso (Version 1.1)
2017
DWLS : Gene Expression Deconvolution Using Dampened Weighted Least Squares (Version 0.1.0)
2022
DYNATE : Dynamic Aggregation Testing (Version 0.1)
2022
DemoKin : Estimate Population Kin Distribution (Version 1.0.3)
2023
Dire : Linear Regressions with a Latent Outcome Variable (Version 2.2.0)
2021
DisaggregateTS : High-Dimensional Temporal Disaggregation (Version 3.0.1)
2022
DoE.MIParray : Creation of Arrays by Mixed Integer Programming (Version 1.0-1)
2017
DoubleCone : Test Against Parametric Regression Function (Version 1.1)
2013
DrBats : Data Representation: Bayesian Approach That's Sparse (Version 0.1.6)
2016
ECOSolveR : Embedded Conic Solver in R (Version 0.5.5)
2015
EFAfactors : Determining the Number of Factors in Exploratory Factor Analysis (Version 1.1.0)
2024
EFDR : Wavelet-Based Enhanced FDR for Detecting Signals from Complete or Incomplete Spatially Aggregated Data (Version 1.3)
2015
EGAnet : Exploratory Graph Analysis – a Framework for Estimating the Number of Dimensions in Multivariate Data using Network Psychometrics (Version 2.1.0)
2019
EIX : Explain Interactions in 'XGBoost' (Version 1.2.0)
2019
EMCluster : EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution (Version 0.2-16)
2012
EMC2 : Bayesian Hierarchical Analysis of Cognitive Models of Choice (Version 2.1.0)
2024
EMMREML : Fitting Mixed Models with Known Covariance Structures (Version 3.1)
2014
EMgaussian : Expectation-Maximization Algorithm for Multivariate Normal (Gaussian) with Missing Data (Version 0.2.1)
2024
ETRep : Analysis of Elliptical Tubes Under the Relative Curvature Condition (Version 0.1.0)
2024
EconGeo : Computing Key Indicators of the Spatial Distribution of Economic Activities (Version 2.0)
2023
EdSurvey : Analysis of NCES Education Survey and Assessment Data (Version 4.0.7)
2017
ElliptCopulas : Inference of Elliptical Distributions and Copulas (Version 0.1.4.1)
2022
EmbedSOM : Fast Embedding Guided by Self-Organizing Map (Version 2.1.2)
2019
Epi : Statistical Analysis in Epidemiology (Version 2.56)
2005
EventPredInCure : Event Prediction Including Cured Population (Version 1.0)
2024
ExtrPatt : Spatial Dependencies and Indices for Extremes (Version 0.1-4)
2023
FAS : Factor-Augmented Sparse Regression Tuning-Free Testing (Version 1.0.0)
2024
FAVAR : Bayesian Analysis of a FAVAR Model (Version 0.1.3)
2022
FDboost : Boosting Functional Regression Models (Version 1.1-2)
2014
FEprovideR : Fixed Effects Logistic Model with High-Dimensional Parameters (Version 1.1)
2019
FKSUM : Fast Kernel Sums (Version 1.0.1)
2019
FRK : Fixed Rank Kriging (Version 2.3.1)
2017
FSInteract : Fast Searches for Interactions (Version 0.1.2)
2015
FSTpackage : Unified Sequence-Based Association Tests Allowing for Multiple Functional Annotation Scores (Version 0.1)
2017
FSelectorRcpp : 'Rcpp' Implementation of 'FSelector' Entropy-Based Feature Selection Algorithms with a Sparse Matrix Support (Version 0.3.13)
2017
FastImputation : Learn from Training Data then Quickly Fill in Missing Data (Version 2.2.1)
2012
FeatureHashing : Creates a Model Matrix via Feature Hashing with a Formula Interface (Version 0.9.2)
2014
FieldSimR : Simulation of Plot Errors and Phenotypes in Plant Breeding Field Trials (Version 1.4.0)
2022
FinNet : Quickly Build and Manipulate Financial Networks (Version 0.2.1)
2023
FindIt : Finding Heterogeneous Treatment Effects (Version 1.2.0)
2012
FlexGAM : Generalized Additive Models with Flexible Response Functions (Version 0.7.2)
2018
FoReco : Forecast Reconciliation (Version 1.0.0)
2020
ForIT : Functions to Estimate Tree Volume and Phytomass in the Italian Forest Inventory 2005 (Version 2.4.0)
2014
ForecastComb : Forecast Combination Methods (Version 1.3.1)
2017
ForestTools : Tools for Analyzing Remote Sensing Forest Data (Version 1.0.2)
2017
FuncNN : Functional Neural Networks (Version 1.0)
2020
GALLO : Genomic Annotation in Livestock for Positional Candidate LOci (Version 1.5)
2020
GDILM.SIR : Inference for Infectious Disease Transmission in SIR Framework (Version 1.2.1)
2024
GDINA : The Generalized DINA Model Framework (Version 2.9.4)
2016
GENLIB : Genealogical Data Analysis (Version 1.1.10)
2014
GENMETA : Implements Generalized Meta-Analysis Using Iterated Reweighted Least Squares Algorithm (Version 0.2.0)
2018
GFD : Tests for General Factorial Designs (Version 0.3.3)
2015
GFDmcv : General Hypothesis Testing Problems for Multivariate Coefficients of Variation (Version 0.1.0)
2023
GFisher : Generalized Fisher's Combination Tests Under Dependence (Version 0.2.0)
2021
GGMnonreg : Non-Regularized Gaussian Graphical Models (Version 1.0.0)
2021
GHap : Genome-Wide Haplotyping (Version 3.0.0)
2016
GLMpack : Data and Code to Accompany Generalized Linear Models, 2nd Edition (Version 0.1.0)
2019
GMMAT : Generalized Linear Mixed Model Association Tests (Version 1.4.2)
2023
GPUmatrix : Basic Linear Algebra with GPU (Version 1.0.2)
2023
GPvecchia : Scalable Gaussian-Process Approximations (Version 0.1.7)
2019
GPvam : Maximum Likelihood Estimation of Multiple Membership Mixed Models Used in Value-Added Modeling (Version 3.1-1)
2012
GSD : Graph Signal Decomposition (Version 1.0.0)
2024
GUniFrac : Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis (Version 1.8)
2012
GWRLASSO : A Hybrid Model for Spatial Prediction Through Local Regression (Version 0.1.0)
2023
GWSDAT : GroundWater Spatiotemporal Data Analysis Tool (GWSDAT) (Version 3.2.1)
2017
GaussSuppression : Tabular Data Suppression using Gaussian Elimination (Version 0.9.0)
2021
GeDS : Geometrically Designed Spline Regression (Version 0.2.4)
2017
GenOrd : Simulation of Discrete Random Variables with Given Correlation Matrix and Marginal Distributions (Version 1.4.0)
2012
GeneNMF : Non-Negative Matrix Factorization for Single-Cell Omics (Version 0.6.0)
2024
GeneralizedWendland : Fully Parameterized Generalized Wendland Covariance Function (Version 0.6.0)
2022
GenoScan : A Genome-Wide Scan Statistic Framework for Whole-Genome Sequence Data Analysis (Version 0.1)
2018
GeoAdjust : Accounting for Random Displacements of True GPS Coordinates of Data (Version 2.0.0)
2023
GeomArchetypal : Finds the Geometrical Archetypal Analysis of a Data Frame (Version 1.0.3)
2024
GeomComb : (Geometric) Forecast Combination Methods (Version 1.0)
2016
GhostKnockoff : The Knockoff Inference Using Summary Statistics (Version 0.1.0)
2021
GillespieSSA2 : Gillespie's Stochastic Simulation Algorithm for Impatient People (Version 0.3.0)
2019
GlarmaVarSel : Variable Selection in Sparse GLARMA Models (Version 1.0)
2021
GrabSVG : Granularity-Based Spatially Variable Genes Identifications (Version 0.0.2)
2023
HCD : Hierarchical Community Detection by Recursive Partitioning (Version 1.0)
2019
HDCI : High Dimensional Confidence Interval Based on Lasso and Bootstrap (Version 1.0-2)
2017
HLMdiag : Diagnostic Tools for Hierarchical (Multilevel) Linear Models (Version 0.5.0)
2011
HMTL : Heterogeneous Multi-Task Feature Learning (Version 0.1.0)
2023
HSAUR : A Handbook of Statistical Analyses Using R (1st Edition) (Version 1.3-10)
2006
HSAUR2 : A Handbook of Statistical Analyses Using R (2nd Edition) (Version 1.1-20)
2009
HSDiC : Homogeneity and Sparsity Detection Incorporating Prior Constraint Information (Version 0.1)
2018
HelpersMG : Tools for Environmental Analyses, Ecotoxicology and Various R Functions (Version 6.2)
2015
HeteroGGM : Gaussian Graphical Model-Based Heterogeneity Analysis (Version 1.0.1)
2021
HhP : Hierarchical Heterogeneity Analysis via Penalization (Version 1.0.0)
2022
HiGarrote : Nonnegative Garrote Method Incorporating Hierarchical Relationships (Version 1.0)
0
Hmsc : Hierarchical Model of Species Communities (Version 3.0-13)
2019
HonestDiD : Robust Inference in Difference-in-Differences and Event Study Designs (Version 0.2.6)
2024
HyperG : Hypergraphs in R (Version 1.0.0)
2021
ICBioMark : Data-Driven Design of Targeted Gene Panels for Estimating Immunotherapy Biomarkers (Version 0.1.4)
2021
ICglm : Information Criteria for Generalized Linear Regression (Version 0.1.0)
2021
IDE : Integro-Difference Equation Spatio-Temporal Models (Version 0.3.1)
2018
ILSM : Analyze Interconnection Structure of Multilayer Interaction Networks (Version 1.0.3.2)
2024
INFOSET : Computing a New Informative Distribution Set of Asset Returns (Version 4.0.6)
2024
INLABMA : Bayesian Model Averaging with INLA (Version 0.1-12)
2013
INLAjoint : Multivariate Joint Modeling for Longitudinal and Time-to-Event Outcomes with 'INLA' (Version 24.3.25)
2023
INLAspacetime : Spatial and Spatio-Temporal Models using 'INLA' (Version 0.1.10)
2023
IPCAPS : Iterative Pruning to Capture Population Structure (Version 1.1.8)
2018
IPV : Item Pool Visualization (Version 1.0.0)
2020
InteractionPoweR : Power Analyses for Interaction Effects in Cross-Sectional Regressions (Version 0.2.2)
2022
IsingFit : Fitting Ising Models Using the ELasso Method (Version 0.4)
2014
JANE : Just Another Latent Space Network Clustering Algorithm (Version 0.1.1)
0
JICO : Joint and Individual Regression (Version 0.0)
2023
KFAS : Kalman Filter and Smoother for Exponential Family State Space Models (Version 1.5.1)
2009
Karen : Kalman Reaction Networks (Version 1.0)
2022
KinMixLite : Inference About Relationships from DNA Mixtures (Version 2.1.1)
2023
KnockoffScreen : Whole-Genome Sequencing Data Analysis via Knockoff Statistics (Version 0.3.0)
2020
L0Learn : Fast Algorithms for Best Subset Selection (Version 2.1.0)
2018
L2E : Robust Structured Regression via the L2 Criterion (Version 2.0)
2022
LDABiplots : Biplot Graphical Interface for LDA Models (Version 0.1.2)
2022
LKT : Logistic Knowledge Tracing (Version 1.7.0)
2021
LMERConvenienceFunctions : Model Selection and Post-Hoc Analysis for (G)LMER Models (Version 3.0)
2010
LMMsolver : Linear Mixed Model Solver (Version 1.0.8)
2021
LMMstar : Repeated Measurement Models for Discrete Times (Version 1.1.0)
2021
LPmerge : Merging Linkage Maps by Linear Programming (Version 1.7)
2013
LRMF3 : Low Rank Matrix Factorization S3 Objects (Version 0.1.0)
2022
LSX : Semi-Supervised Algorithm for Document Scaling (Version 1.4.0)
2020
LaMa : Fast Numerical Maximum Likelihood Estimation for Latent Markov Models (Version 1.0.0)
2024
LassoBacktracking : Modelling Interactions in High-Dimensional Data with Backtracking (Version 1.1)
2016
LiblineaR : Linear Predictive Models Based on the LIBLINEAR C/C++ Library (Version 2.10-24)
2010
LncPath : Identifying the Pathways Regulated by LncRNA Sets of Interest (Version 1.1)
2016
LocKer : Locally Sparse Estimator of Generalized Varying Coefficient Model for Asynchronous Longitudinal Data (Version 1.1)
2022
MAGEE : Mixed Model Association Test for GEne-Environment Interaction (Version 1.4.2)
2023
MANOVA.RM : Resampling-Based Analysis of Multivariate Data and Repeated Measures Designs (Version 0.5.4)
2016
MAP : Multimodal Automated Phenotyping (Version 0.1.3)
2019
MARVEL : Revealing Splicing Dynamics at Single-Cell Resolution (Version 1.4.0)
2021
MBC : Multivariate Bias Correction of Climate Model Outputs (Version 0.10-6)
2016
MCARtest : Optimal Nonparametric Testing of Missing Completely at Random (Version 1.2.2)
2022
MCMCglmm : MCMC Generalised Linear Mixed Models (Version 2.36)
2009
MCMCprecision : Precision of Discrete Parameters in Transdimensional MCMC (Version 0.4.0)
2017
MDPtoolbox : Markov Decision Processes Toolbox (Version 4.0.3)
2012
MECfda : Scalar-on-Function Regression with Measurement Error Correction (Version 0.1.0)
2024
MEGENA : Multiscale Clustering of Geometrical Network (Version 1.3.7)
2016
MESS : Miscellaneous Esoteric Statistical Scripts (Version 0.5.12)
2012
MFPCA : Multivariate Functional Principal Component Analysis for Data Observed on Different Dimensional Domains (Version 1.3-10)
2016
MGDrivE2 : Mosquito Gene Drive Explorer 2 (Version 2.1.0)
2020
MIIPW : IPW and Mean Score Methods for Time-Course Missing Data (Version 0.1.1)
2021
MIIVsem : Model Implied Instrumental Variable (MIIV) Estimation of Structural Equation Models (Version 0.5.8)
2015
MJMbamlss : Multivariate Joint Models with 'bamlss' (Version 0.1.0)
2023
MLGL : Multi-Layer Group-Lasso (Version 1.0.0)
2018
MLMusingR : Practical Multilevel Modeling (Version 0.3.2)
2022
MM4LMM : Inference of Linear Mixed Models Through MM Algorithm (Version 3.0.3)
2018
MMeM : Multivariate Mixed Effects Model (Version 0.1.1)
2019
MOCHA : Modeling for Single-Cell Open Chromatin Analysis (Version 1.1.0)
2022
MRFcov : Markov Random Fields with Additional Covariates (Version 1.0.39)
2018
MRTSampleSizeBinary : Sample Size Calculator for MRT with Binary Outcomes (Version 0.1.2)
2021
MSclust : Multiple-Scaled Clustering (Version 1.0.4)
2022
MTAR : Multi-Trait Analysis of Rare-Variant Association Study (Version 0.1.1)
2020
MachineShop : Machine Learning Models and Tools (Version 3.8.0)
2018
MargCond : Joint Marginal-Conditional Model (Version 1.0.0)
2018
MatrixExtra : Extra Methods for Sparse Matrices (Version 0.1.15)
2021
MatrixModels : Modelling with Sparse and Dense Matrices (Version 0.5-3)
2010
MendelianRandomization : Mendelian Randomization Package (Version 0.10.0)
2016
MetaHD : A Multivariate Meta-Analysis Model for High-Dimensional Metabolomics Data (Version 0.1.3)
2024
MethodCompare : Evaluating Bias and Precision in Method Comparison Studies (Version 1.0.0)
2016
MetricGraph : Random Fields on Metric Graphs (Version 1.3.0)
2023
MiRKAT : Microbiome Regression-Based Kernel Association Tests (Version 1.2.3)
2017
MicrobiomeStat : Statistical Methods for Microbiome Compositional Data (Version 1.2)
2021
MixedPsy : Statistical Tools for the Analysis of Psychophysical Data (Version 1.1.0)
2017
MixfMRI : Mixture fMRI Clustering Analysis (Version 0.1-4)
2018
MoBPS : Modular Breeding Program Simulator (Version 1.6.64)
2020
MoTBFs : Learning Hybrid Bayesian Networks using Mixtures of Truncated Basis Functions (Version 1.4.1)
2015
ModelMatrixModel : Create Model Matrix and Save the Transforming Parameters (Version 0.1.0)
2021
MonteCarloSEM : Monte Carlo Data Simulation Package (Version 0.0.8)
2020
Morpho : Calculations and Visualisations Related to Geometric Morphometrics (Version 2.12)
2013
MuChPoint : Multiple Change Point (Version 0.6.3)
2018
MuMIn : Multi-Model Inference (Version 1.48.4)
2010
MultiGlarmaVarSel : Variable Selection in Sparse Multivariate GLARMA Models (Version 1.0)
2022
MultiKink : Estimation and Inference for Multi-Kink Quantile Regression (Version 0.2.0)
2020
MultiOrd : Generation of Multivariate Ordinal Variates (Version 2.4.3)
2012
MultiStatM : Multivariate Statistical Methods (Version 2.0.0)
2022
MultiVarMI : Multiple Imputation for Multivariate Data (Version 1.0)
2018
MultiVarSel : Variable Selection in a Multivariate Linear Model (Version 1.1.3)
2017
N2R : Fast and Scalable Approximate k-Nearest Neighbor Search Methods using 'N2' Library (Version 1.0.3)
2020
NAIR : Network Analysis of Immune Repertoire (Version 1.0.4)
2023
NBtsVarSel : Variable Selection in a Specific Regression Time Series of Counts (Version 1.0)
2023
NCmisc : Miscellaneous Functions for Creating Adaptive Functions and Scripts (Version 1.2.0)
2013
NSAE : Nonstationary Small Area Estimation (Version 0.4.0)
2021
NVCSSL : Nonparametric Varying Coefficient Spike-and-Slab Lasso (Version 2.0)
2020
NegBinBetaBinreg : Negative Binomial and Beta Binomial Bayesian Regression Models (Version 1.0)
2016
NetMix : Dynamic Mixed-Membership Network Regression Model (Version 0.2.0.2)
2019
NetworkComparisonTest : Statistical Comparison of Two Networks Based on Several Invariance Measures (Version 2.2.2)
2016
NetworkDistance : Distance Measures for Networks (Version 0.3.4)
2017
NetworkRiskMeasures : Risk Measures for (Financial) Networks (Version 0.1.4)
2017
NonProbEst : Estimation in Nonprobability Sampling (Version 0.2.4)
2019
ODT : Optimal Decision Trees Algorithm (Version 1.0.0)
2024
ORKM : The Online Regularized K-Means Clustering Algorithm (Version 0.8.0.0)
2022
OpenMx : Extended Structural Equation Modelling (Version 2.21.13)
2015
OptimModel : Perform Nonlinear Regression Using 'optim' as the Optimization Engine (Version 2.0-1)
2024
OptimalDesign : A Toolbox for Computing Efficient Designs of Experiments (Version 1.0.1)
2016
OrdCD : Ordinal Causal Discovery (Version 1.1.2)
2022
OrdNor : Concurrent Generation of Ordinal and Normal Data with Given Correlation Matrix and Marginal Distributions (Version 2.2.3)
2013
PBImisc : A Set of Datasets Used in My Classes or in the Book 'Modele Liniowe i Mieszane w R, Wraz z Przykladami w Analizie Danych' (Version 1.0)
2011
PCADSC : Tools for Principal Component Analysis-Based Data Structure Comparisons (Version 0.8.0)
2017
PCGII : Partial Correlation Graph with Information Incorporation (Version 1.1.2)
2024
PCovR : Principal Covariates Regression (Version 2.7.2)
2013
PERMANOVA : Multivariate Analysis of Variance Based on Distances and Permutations (Version 0.2.0)
2021
PEIP : Geophysical Inverse Theory and Optimization (Version 2.2-5)
2012
PEPBVS : Bayesian Variable Selection using Power-Expected-Posterior Prior (Version 2.0)
2023
PFIM : Population Fisher Information Matrix (Version 6.1)
2022
PJFM : Variational Inference for High-Dimensional Joint Frailty Model (Version 0.1.0)
2024
PLNmodels : Poisson Lognormal Models (Version 1.2.0)
2019
PLmixed : Estimate (Generalized) Linear Mixed Models with Factor Structures (Version 0.1.7)
2017
POINT : Protein Structure Guided Local Test (Version 1.3)
2019
PQLseq : Efficient Mixed Model Analysis of Count Data in Large-Scale Genomic Sequencing Studies (Version 1.2.1)
2018
PRECAST : Embedding and Clustering with Alignment for Spatial Datasets (Version 1.6.5)
2022
PRIMAL : Parametric Simplex Method for Sparse Learning (Version 1.0.2)
2019
PRIMME : Eigenvalues and Singular Values and Vectors from Large Matrices (Version 3.2-6)
2017
PRISMA : Protocol Inspection and State Machine Analysis (Version 0.2-7)
2012
PROreg : Patient Reported Outcomes Regression Analysis (Version 1.3)
2017
PRSPGx : Construct PGx PRS (Version 0.3.0)
2021
PUGMM : Parsimonious Ultrametric Gaussian Mixture Models (Version 0.1.0)
2024
PUlasso : High-Dimensional Variable Selection with Presence-Only Data (Version 3.2.5)
2017
PanCanVarSel : Pan-Cancer Variable Selection (Version 0.0.3)
2019
PanelMatch : Matching Methods for Causal Inference with Time-Series Cross-Sectional Data (Version 2.2.0)
2020
PartCensReg : Estimation and Diagnostics for Partially Linear Censored Regression Models Based on Heavy-Tailed Distributions (Version 1.39)
2018
PartialNetwork : Estimating Peer Effects Using Partial Network Data (Version 1.0.4)
2023
PenCoxFrail : Regularization in Cox Frailty Models (Version 2.0.0)
2016
PenIC : Semiparametric Regression Analysis of Interval-Censored Data using Penalized Splines (Version 1.0.0)
2020
PerFit : Person Fit (Version 1.4.6)
2014
Petersen : Estimators for Two-Sample Capture-Recapture Studies (Version 2024.6.1)
2023
PhylogeneticEM : Automatic Shift Detection using a Phylogenetic EM (Version 1.7.0)
2017
PlackettLuce : Plackett-Luce Models for Rankings (Version 0.4.3)
2017
Platypus : Single-Cell Immune Repertoire and Gene Expression Analysis (Version 3.6.0)
2021
PoisBinNonNor : Data Generation with Poisson, Binary and Continuous Components (Version 1.3.3)
2015
PoisBinOrd : Data Generation with Poisson, Binary and Ordinal Components (Version 1.4.3)
2015
PoisBinOrdNonNor : Generation of Up to Four Different Types of Variables (Version 1.5.3)
2015
PoisBinOrdNor : Data Generation with Poisson, Binary, Ordinal and Normal Components (Version 1.6.3)
2015
PoisNonNor : Simultaneous Generation of Count and Continuous Data (Version 1.6.3)
2015
PoisNor : Simultaneous Generation of Multivariate Data with Poisson and Normal Marginals (Version 1.3.3)
2014
PrevMap : Geostatistical Modelling of Spatially Referenced Prevalence Data (Version 1.5.4)
2014
ProFAST : Probabilistic Factor Analysis for Spatially-Aware Dimension Reduction (Version 1.4)
2023
ProbitSpatial : Probit with Spatial Dependence, SAR, SEM and SARAR Models (Version 1.1)
2016
ProcMod : Informative Procrustean Matrix Correlation (Version 1.0.8)
2019
QRM : Provides R-Language Code to Examine Quantitative Risk Management Concepts (Version 0.4-31)
2012
QZ : Generalized Eigenvalues and QZ Decomposition (Version 0.2-3)
2013
Qtools : Utilities for Quantiles (Version 1.5.9)
2016
Qval : The Q-Matrix Validation Methods Framework (Version 1.0.0)
2024
R.matlab : Read and Write MAT Files and Call MATLAB from Within R (Version 3.7.0)
2005
R2MLwiN : Running 'MLwiN' from Within R (Version 0.8-9)
2012
RAINBOWR : Genome-Wide Association Study with SNP-Set Methods (Version 0.1.35)
2019
RCBR : Random Coefficient Binary Response Estimation (Version 0.6.2)
2020
RCTS : Clustering Time Series While Resisting Outliers (Version 0.2.4)
2022
REBayes : Empirical Bayes Estimation and Inference (Version 2.56)
2013
REN : Regularization Ensemble for Robust Portfolio Optimization (Version 0.1.0)
2024
RESET : Reconstruction Set Test (Version 1.0.0)
2023
REndo : Fitting Linear Models with Endogenous Regressors using Latent Instrumental Variables (Version 2.4.10)
2015
RGE : Response from Genotype to Environment (Version 1.0)
2021
RGENERATEPREC : Tools to Generate Daily-Precipitation Time Series (Version 1.2.9)
2015
RGF : Regularized Greedy Forest (Version 1.1.1)
2018
RHPCBenchmark : Benchmarks for High-Performance Computing Environments (Version 0.1.0)
2017
RKEEL : Using 'KEEL' in R Code (Version 1.3.4)
2016
RMLPCA : Maximum Likelihood Principal Component Analysis (Version 0.0.1)
2020
RMThreshold : Signal-Noise Separation in Random Matrices by using Eigenvalue Spectrum Analysis (Version 1.1)
2016
RNGforGPD : Random Number Generation for Generalized Poisson Distribution (Version 1.1.0)
2018
RNewsflow : Tools for Comparing Text Messages Across Time and Media (Version 1.2.8)
2016
ROCnReg : ROC Curve Inference with and without Covariates (Version 1.0-9)
2020
ROI.plugin.ecos : 'ECOS' Plugin for the 'R' Optimization Infrastructure (Version 1.0-2)
2016
ROI.plugin.osqp : 'osqp' Plugin for the 'R' Optimization Infrastructure (Version 1.0-2)
2020
RPANDA : Phylogenetic ANalyses of DiversificAtion (Version 2.3)
2014
RPatternJoin : String Similarity Joins for Hamming and Levenshtein Distances (Version 1.0.0)
2024
RRPP : Linear Model Evaluation with Randomized Residuals in a Permutation Procedure (Version 2.0.3)
2018
RSC : Robust and Sparse Correlation Matrix (Version 2.0.4)
2020
RSSL : Implementations of Semi-Supervised Learning Approaches for Classification (Version 0.9.7)
2016
RSiena : Siena - Simulation Investigation for Empirical Network Analysis (Version 1.4.7)
2009
RSpectra : Solvers for Large-Scale Eigenvalue and SVD Problems (Version 0.16-2)
2016
RTMB : 'R' Bindings for 'TMB' (Version 1.6)
2023
RaceID : Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data (Version 0.3.8)
2018
Rcplex : R Interface to CPLEX (Version 0.3-6)
2008
RcppArmadillo : 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library (Version 14.0.2-1)
2010
RcppBlaze : 'Rcpp' Integration for the 'Blaze' High-Performance 'C++' Math Library (Version 1.0.1)
2017
RcppEigen : 'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library (Version 0.3.4.0.2)
2011
RcppML : Rcpp Machine Learning Library (Version 0.3.7)
2021
Rcsdp : R Interface to the CSDP Semidefinite Programming Library (Version 0.1.57.5)
2009
ReDaMoR : Relational Data Modeler (Version 0.7.6)
2020
ReMFPCA : Regularized Multivariate Functional Principal Component Analysis (Version 1.0.0)
2023
RealVAMS : Multivariate VAM Fitting (Version 0.4-6)
2014
Rediscover : Identify Mutually Exclusive Mutations (Version 0.3.2)
2021
RegSDC : Information Preserving Regression-Based Tools for Statistical Disclosure Control (Version 0.7.0)
2019
Renvlp : Computing Envelope Estimators (Version 3.4.5)
2018
ResIN : Response Item Networks (Version 2.0.0)
2023
ResourceSelection : Resource Selection (Probability) Functions for Use-Availability Data (Version 0.3-6)
2011
RestoreNet : Random-Effects Stochastic Reaction Networks (Version 1.0.1)
2022
RevEcoR : Reverse Ecology Analysis on Microbiome (Version 0.99.3)
2015
Riemann : Learning with Data on Riemannian Manifolds (Version 0.1.4)
2020
RiskMap : Geo-Statistical Modeling of Spatially Referenced Data (Version 0.1.0)
2024
Rlinsolve : Iterative Solvers for (Sparse) Linear System of Equations (Version 0.3.2)
2017
Rmodule : Automated Markov Chain Monte Carlo for Arbitrarily Structured Correlation Matrices (Version 1.0)
2023
Rnmr1D : Perform the Complete Processing of a Set of Proton Nuclear Magnetic Resonance Spectra (Version 1.3.2)
2018
RobKF : Innovative and/or Additive Outlier Robust Kalman Filtering (Version 1.0.2)
2020
RobustIV : Robust Instrumental Variable Methods in Linear Models (Version 0.2.5)
2022
Rphylopars : Phylogenetic Comparative Tools for Missing Data and Within-Species Variation (Version 0.3.10)
2015
Rsurrogate : Robust Estimation of the Proportion of Treatment Effect Explained by Surrogate Marker Information (Version 3.2)
2015
Rsymphony : SYMPHONY in R (Version 0.1-33)
2010
Rwclust : Random Walk Clustering on Weighted Graphs (Version 0.1.0)
2022
Ryacas : R Interface to the 'Yacas' Computer Algebra System (Version 1.1.5)
2007
Ryacas0 : Legacy 'Ryacas' (Interface to 'Yacas' Computer Algebra System) (Version 0.4.4)
2019
SALES : The (Adaptive) Elastic Net and Lasso Penalized Sparse Asymmetric Least Squares (SALES) and Coupled Sparse Asymmetric Least Squares (COSALES) using Coordinate Descent and Proximal Gradient Algorithms (Version 1.0.2)
2016
SAR : Smart Adaptive Recommendations (Version 1.0.3)
2019
SAVER : Single-Cell RNA-Seq Gene Expression Recovery (Version 1.1.2)
2018
SC.MEB : Spatial Clustering with Hidden Markov Random Field using Empirical Bayes (Version 1.1)
2021
SCGLR : Supervised Component Generalized Linear Regression (Version 3.0)
2013
SCIBER : Single-Cell Integrator and Batch Effect Remover (Version 0.2.2)
2022
SCIntRuler : Guiding the Integration of Multiple Single-Cell RNA-Seq Datasets (Version 0.99.6)
2024
SCORNET : Semi-Supervised Calibration of Risk with Noisy Event Times (Version 0.1.1)
2020
SCORPION : Single Cell Oriented Reconstruction of PANDA Individual Optimized Networks (Version 1.0.2)
2022
SCORPIUS : Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data (Version 1.0.9)
2017
SCdeconR : Deconvolution of Bulk RNA-Seq Data using Single-Cell RNA-Seq Data as Reference (Version 1.0.0)
2024
SCpubr : Generate Publication Ready Visualizations of Single Cell Transcriptomics Data (Version 2.0.2)
2022
SDPDmod : Spatial Dynamic Panel Data Modeling (Version 0.0.5)
2022
SEAGLE : Scalable Exact Algorithm for Large-Scale Set-Based Gene-Environment Interaction Tests (Version 1.0.1)
2021
SEset : Computing Statistically-Equivalent Path Models (Version 1.0.1)
2022
SID : Structural Intervention Distance (Version 1.1)
2015
SIMle : Estimation and Inference for General Time Series Regression (Version 0.1.0)
2023
SIMplyBee : 'AlphaSimR' Extension for Simulating Honeybee Populations and Breeding Programmes (Version 0.4.1)
2022
SIRE : Finding Feedback Effects in SEM and Testing for Their Significance (Version 1.1.0)
2018
SISIR : Select Intervals Suited for Functional Regression (Version 0.2.3)
2016
SKAT : SNP-Set (Sequence) Kernel Association Test (Version 2.2.5)
2012
SLBDD : Statistical Learning for Big Dependent Data (Version 0.0.4)
2021
SLOPE : Sorted L1 Penalized Estimation (Version 0.5.1)
2015
SLTCA : Scalable and Robust Latent Trajectory Class Analysis (Version 0.1.0)
2020
SMNCensReg : Fitting Univariate Censored Regression Model Under the Family of Scale Mixture of Normal Distributions (Version 3.1)
2013
SOR : Estimation using Sequential Offsetted Regression (Version 0.23.1)
2014
SPAS : Stratified-Petersen Analysis System (Version 2024.1.31)
2019
SPCompute : Compute Power or Sample Size for GWAS with Covariate Effect (Version 1.0.3)
2022
SPECK : Receptor Abundance Estimation using Reduced Rank Reconstruction and Clustered Thresholding (Version 1.0.0)
2022
SPSP : Selection by Partitioning the Solution Paths (Version 0.2.0)
2021
SRTsim : Simulator for Spatially Resolved Transcriptomics (Version 0.99.7)
2022
SSBtools : Statistics Norway's Miscellaneous Tools (Version 1.5.5)
2016
SSN2 : Spatial Modeling on Stream Networks (Version 0.2.1)
2023
STB : Simultaneous Tolerance Bounds (Version 0.6.5)
2016
STPGA : Selection of Training Populations by Genetic Algorithm (Version 5.2.1)
2014
STREAK : Receptor Abundance Estimation using Feature Selection and Gene Set Scoring (Version 1.0.0)
2022
SUMMER : Small-Area-Estimation Unit/Area Models and Methods for Estimation in R (Version 1.4.0)
2017
ScreenClean : Screen and clean variable selection procedures (Version 1.0.1)
2012
Seurat : Tools for Single Cell Genomics (Version 5.1.0)
2017
SeuratObject : Data Structures for Single Cell Data (Version 5.0.2)
2021
Sie2nts : Sieve Methods for Non-Stationary Time Series (Version 0.1.0)
2023
SightabilityModel : Wildlife Sightability Modeling (Version 1.5.5)
2012
Signac : Analysis of Single-Cell Chromatin Data (Version 1.14.0)
2020
SignacX : Cell Type Identification and Discovery from Single Cell Gene Expression Data (Version 2.2.5)
2021
SimCorrMix : Simulation of Correlated Data with Multiple Variable Types Including Continuous and Count Mixture Distributions (Version 0.1.1)
2018
SimInf : A Framework for Data-Driven Stochastic Disease Spread Simulations (Version 9.8.1)
2016
SimMultiCorrData : Simulation of Correlated Data with Multiple Variable Types (Version 0.2.2)
2017
SimSurvNMarker : Simulate Survival Time and Markers (Version 0.1.3)
2020
SimplyAgree : Flexible and Robust Agreement and Reliability Analyses (Version 0.2.0)
2021
SmCCNet : Sparse Multiple Canonical Correlation Network Analysis Tool (Version 2.0.3)
2019
SmallCountRounding : Small Count Rounding of Tabular Data (Version 1.0.8)
2018
SmoothTensor : A Collection of Smooth Tensor Estimation Methods (Version 0.1.1)
2021
SoupX : Single Cell mRNA Soup eXterminator (Version 1.6.2)
2020
SpaCCI : Spatially Aware Cell-Cell Interaction Analysis (Version 1.0.2)
2024
SpaCOAP : High-Dimensional Spatial Covariate-Augmented Overdispersed Poisson Factor Model (Version 1.2)
2024
SpaceTimeBSS : Blind Source Separation for Multivariate Spatio-Temporal Data (Version 0.4-0)
2022
SparseChol : Sparse Matrix C++ Classes Including Sparse Cholesky LDL Decomposition of Symmetric Matrices (Version 0.3.1)
2022
SpatialDDLS : Deconvolution of Spatial Transcriptomics Data Based on Neural Networks (Version 1.0.3)
2023
SpatialGEV : Fit Spatial Generalized Extreme Value Models (Version 1.0.1)
2022
SpiceFP : Sparse Method to Identify Joint Effects of Functional Predictors (Version 0.1.2)
2021
SplitKnockoff : Split Knockoffs for Structural Sparsity (Version 2.1)
2021
StableEstim : Estimate the Four Parameters of Stable Laws using Different Methods (Version 2.3)
2014
StanHeaders : C++ Header Files for Stan (Version 2.32.10)
2015
SteppedPower : Power Calculation for Stepped Wedge Designs (Version 0.3.5)
2021
SubgrpID : Patient Subgroup Identification for Clinical Drug Development (Version 0.12)
2017
SuperCell : Simplification of scRNA-Seq Data by Merging Together Similar Cells (Version 1.0.1)
2024
SystemicR : Monitoring Systemic Risk (Version 0.1.0)
2020
TAG : Transformed Additive Gaussian Processes (Version 0.5.1)
2019
TANDEM : A Two-Stage Approach to Maximize Interpretability of Drug Response Models Based on Multiple Molecular Data Types (Version 1.0.3)
2016
TCA : Tensor Composition Analysis (Version 1.2.1)
2019
TFisher : Optimal Thresholding Fisher's P-Value Combination Method (Version 0.2.0)
2017
THREC : Tree Height Response Calibration for Swedish Forests (Version 1.0.0)
2023
TKCat : Tailored Knowledge Catalog (Version 1.1.11)
2021
TMB : Template Model Builder: A General Random Effect Tool Inspired by 'ADMB' (Version 1.9.15)
2015
TML : Tropical Geometry Tools for Machine Learning (Version 2.3.0)
2023
TOHM : Testing One Hypothesis Multiple Times (Version 1.4)
2019
TPEA : A Novel Topology-Based Pathway Enrichment Analysis Approach (Version 3.1.0)
2016
TRMF : Temporally Regularized Matrix Factorization (Version 0.2.1)
2021
TSdisaggregation : High-Dimensional Temporal Disaggregation (Version 2.0.0)
2022
TSsmoothing : Trend Estimation of Univariate and Bivariate Time Series with Controlled Smoothness (Version 0.1.0)
2019
TTCA : Transcript Time Course Analysis (Version 0.1.1)
2016
TULIP : A Toolbox for Linear Discriminant Analysis with Penalties (Version 1.0.2)
2019
TangledFeatures : Feature Selection in Highly Correlated Spaces (Version 0.1.1)
2023
TensorTools : Multilinear Algebra (Version 1.0.0)
2024
TextForecast : Regression Analysis and Forecasting Using Textual Data from a Time-Varying Dictionary (Version 0.1.3)
2019
TooManyCellsR : An R Wrapper for 'TooManyCells' (Version 0.1.1.0)
2019
TopKSignal : A Convex Optimization Tool for Signal Reconstruction from Multiple Ranked Lists (Version 1.0)
2024
TopicScore : The Topic SCORE Algorithm to Fit Topic Models (Version 0.0.1)
2019
TraceAssist : Nonparametric Trace Regression via Sign Series Representation (Version 0.1.0)
2021
TransTGGM : Transfer Learning for Tensor Graphical Models (Version 1.0.0)
2022
TropFishR : Tropical Fisheries Analysis (Version 1.6.5)
2016
VAM : Variance-Adjusted Mahalanobis (Version 1.1.0)
2021
VBJM : Variational Inference for Joint Model (Version 0.1.0)
2023
VCA : Variance Component Analysis (Version 1.5.1)
2015
VDPO : Working with and Analyzing Functional Data of Varying Lengths (Version 0.1.0)
2024
VeccTMVN : Multivariate Normal Probabilities using Vecchia Approximation (Version 1.2.0)
2024
ViSiElse : A Visual Tool for Behavior Analysis over Time (Version 1.2.2)
2016
Vicus : Exploiting Local Structures to Improve Network-Based Analysis of Biological Data (Version 0.99.0)
2023
WGScan : A Genome-Wide Scan Statistic Framework for Whole-Genome Sequence Data Analysis (Version 0.1)
2019
WLogit : Variable Selection in High-Dimensional Logistic Regression Models using a Whitening Approach (Version 2.1)
2022
WaveSampling : Weakly Associated Vectors (WAVE) Sampling (Version 0.1.3)
2019
WaverideR : Extracting Signals from Wavelet Spectra (Version 0.3.2)
2023
WeMix : Weighted Mixed-Effects Models Using Multilevel Pseudo Maximum Likelihood Estimation (Version 4.0.3)
2018
WeightSVM : Subject Weighted Support Vector Machines (Version 1.7-16)
2020
WoodburyMatrix : Fast Matrix Operations via the Woodbury Matrix Identity (Version 0.0.3)
2020
ZIPFA : Zero Inflated Poisson Factor Analysis (Version 0.8.1)
2019
abclass : Angle-Based Large-Margin Classifiers (Version 0.4.0)
2022
abess : Fast Best Subset Selection (Version 0.4.9)
2021
abnormality : Measure a Subject's Abnormality with Respect to a Reference Population (Version 0.1.0)
2018
abn : Modelling Multivariate Data with Additive Bayesian Networks (Version 3.1.1)
2011
absorber : Variable Selection in Nonparametric Models using B-Splines (Version 1.0)
2024
abtest : Bayesian A/B Testing (Version 1.0.1)
2019
adapt4pv : Adaptive Approaches for Signal Detection in Pharmacovigilance (Version 0.2-3)
2020
adaptMCMC : Implementation of a Generic Adaptive Monte Carlo Markov Chain Sampler (Version 1.5)
2011
adaptsmoFMRI : Adaptive Smoothing of FMRI Data (Version 1.2)
2012
addhaz : Binomial and Multinomial Additive Hazard Models (Version 0.5)
2016
adelie : Group Lasso and Elastic Net Solver for Generalized Linear Models (Version 1.0.2)
2024
adjclust : Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix (Version 0.6.10)
2017
afex : Analysis of Factorial Experiments (Version 1.4-1)
2012
aghq : Adaptive Gauss Hermite Quadrature for Bayesian Inference (Version 0.4.1)
2021
agriutilities : Utilities for Data Analysis in Agriculture (Version 1.2.0)
2023
ahMLE : Methods for the Additive Hazard Model (Version 1.20.1)
2021
ahaz : Regularization for Semiparametric Additive Hazards Regression (Version 1.15.1)
2011
albatross : PARAFAC Analysis of Fluorescence Excitation-Emission Matrices (Version 0.3-8)
2020
alakazam : Immunoglobulin Clonal Lineage and Diversity Analysis (Version 1.3.0)
2016
alkahest : Pre-Processing XY Data from Experimental Methods (Version 1.2.0)
2022
alphastable : Inference for Stable Distribution (Version 0.2.1)
2018
altmeta : Alternative Meta-Analysis Methods (Version 4.2)
2016
animalEKF : Extended Kalman Filters for Animal Movement (Version 1.2)
2020
anndata : 'anndata' for R (Version 0.7.5.6)
2020
anticlust : Subset Partitioning via Anticlustering (Version 0.8.7)
2020
apcluster : Affinity Propagation Clustering (Version 1.4.13)
2010
apdesign : An Implementation of the Additive Polynomial Design Matrix (Version 1.0.0)
2016
aphylo : Statistical Inference and Prediction of Annotations in Phylogenetic Trees (Version 0.3-3)
2022
applicable : A Compilation of Applicability Domain Methods (Version 0.1.1)
2020
ar.matrix : Simulate Auto Regressive Data from Precision Matricies (Version 0.1.0)
2018
arc : Association Rule Classification (Version 1.4)
2016
archetypal : Finds the Archetypal Analysis of a Data Frame (Version 1.3.1)
2019
argo : Accurate Estimation of Influenza Epidemics using Google Search Data (Version 3.0.2)
2019
aricode : Efficient Computations of Standard Clustering Comparison Measures (Version 1.0.3)
2018
arm : Data Analysis Using Regression and Multilevel/Hierarchical Models (Version 1.14-4)
2007
arules : Mining Association Rules and Frequent Itemsets (Version 1.7-8)
2005
arulesCBA : Classification Based on Association Rules (Version 1.2.7)
2016
ashr : Methods for Adaptive Shrinkage, using Empirical Bayes (Version 2.2-63)
2016
asnipe : Animal Social Network Inference and Permutations for Ecologists (Version 1.1.17)
2016
aster2 : Aster Models (Version 0.3-2)
2010
audubon : Japanese Text Processing Tools (Version 0.5.2)
2022
autoMFA : Algorithms for Automatically Fitting MFA Models (Version 1.0.0)
2021
autostats : Auto Stats (Version 0.4.1)
2021
bWGR : Bayesian Whole-Genome Regression (Version 2.2.11)
2015
backbone : Extracts the Backbone from Graphs (Version 2.1.4)
2019
bage : Bayesian Estimation and Forecasting of Age-Specific Rates (Version 0.7.4)
2024
bamlss : Bayesian Additive Models for Location, Scale, and Shape (and Beyond) (Version 1.2-5)
2017
bamm : Species Distribution Models as a Function of Biotic, Abiotic and Movement Factors (BAM) (Version 0.5.0)
2022
basefun : Infrastructure for Computing with Basis Functions (Version 1.1-4)
2016
bayesWatch : Bayesian Change-Point Detection for Process Monitoring with Fault Detection (Version 0.1.3)
2023
bbknnR : Perform Batch Balanced KNN in R (Version 1.1.1)
2022
bbmle : Tools for General Maximum Likelihood Estimation (Version 1.0.25.1)
2007
bc3net : Gene Regulatory Network Inference with Bc3net (Version 1.0.4)
2012
benchmarkme : Crowd Sourced System Benchmarks (Version 1.0.8)
2016
bestridge : A Comprehensive R Package for Best Subset Selection (Version 1.0.7)
2021
bgsmtr : Bayesian Group Sparse Multi-Task Regression (Version 0.7)
2016
biClassify : Binary Classification Using Extensions of Discriminant Analysis (Version 1.3)
2020
bibliometrix : Comprehensive Science Mapping Analysis (Version 4.3.0)
2016
biblioverlap : Document-Level Matching Between Bibliographic Datasets (Version 1.0.2)
2023
bigDM : Scalable Bayesian Disease Mapping Models for High-Dimensional Data (Version 0.5.5)
2022
bigQF : Quadratic Forms in Large Matrices (Version 1.6)
2021
bigergm : Fit, Simulate, and Diagnose Hierarchical Exponential-Family Models for Big Networks (Version 1.2.3)
2024
biglasso : Extending Lasso Model Fitting to Big Data (Version 1.6.0)
2016
bigsnpr : Analysis of Massive SNP Arrays (Version 1.12.15)
2017
bigsparser : Sparse Matrix Format with Data on Disk (Version 0.7.3)
2020
bioregion : Comparison of Bioregionalisation Methods (Version 1.1.1)
2023
biospear : Biomarker Selection in Penalized Regression Models (Version 1.0.2)
2017
birankr : Ranking Nodes in Bipartite and Weighted Networks (Version 1.0.1)
2020
blapsr : Bayesian Inference with Laplace Approximations and P-Splines (Version 0.6.1)
2020
blatent : Bayesian Latent Variable Models (Version 0.1.2)
2020
blavaan : Bayesian Latent Variable Analysis (Version 0.5-6)
2015
blockForest : Block Forests: Random Forests for Blocks of Clinical and Omics Covariate Data (Version 0.2.6)
2018
blockmodeling : Generalized and Classical Blockmodeling of Valued Networks (Version 1.1.5)
2008
bolasso : Model Consistent Lasso Estimation Through the Bootstrap (Version 0.2.0)
2022
bootnet : Bootstrap Methods for Various Network Estimation Routines (Version 1.6)
2015
brainGraph : Graph Theory Analysis of Brain MRI Data (Version 3.1.0)
2015
brant : Test for Parallel Regression Assumption (Version 0.3-0)
2017
bravo : Bayesian Screening and Variable Selection (Version 3.2.2)
2020
brglm2 : Bias Reduction in Generalized Linear Models (Version 0.9.2)
2017
bridgesampling : Bridge Sampling for Marginal Likelihoods and Bayes Factors (Version 1.1-2)
2017
brms : Bayesian Regression Models using 'Stan' (Version 2.22.0)
2015
brolgar : Browse Over Longitudinal Data Graphically and Analytically in R (Version 1.0.1)
2020
brokenstick : Broken Stick Model for Irregular Longitudinal Data (Version 2.5.0)
2020
broom.mixed : Tidying Methods for Mixed Models (Version 0.2.9.6)
2018
bspcov : Bayesian Sparse Estimation of a Covariance Matrix (Version 1.0.0)
2024
bsreg : Bayesian Spatial Regression Models (Version 0.0.2)
2021
btergm : Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood (Version 1.10.12)
2015
bvartools : Bayesian Inference of Vector Autoregressive and Error Correction Models (Version 0.2.4)
2019
cAIC4 : Conditional Akaike Information Criterion for 'lme4' and 'nlme' (Version 1.0)
2014
cSEM : Composite-Based Structural Equation Modeling (Version 0.5.0)
2020
cape : Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice (Version 3.1.2)
2013
caracas : Computer Algebra (Version 2.1.1)
2020
car : Companion to Applied Regression (Version 3.1-3)
2001
caret : Classification and Regression Training (Version 6.0-94)
2007
cases : Stratified Evaluation of Subgroup Classification Accuracy (Version 0.1.1)
2023
castor : Efficient Phylogenetics on Large Trees (Version 1.8.2)
2017
catch : Covariate-Adjusted Tensor Classification in High-Dimensions (Version 1.0.1)
2018
causalOT : Optimal Transport Weights for Causal Inference (Version 1.0.2)
2022
cccd : Class Cover Catch Digraphs (Version 1.6)
2010
cellpypes : Cell Type Pipes for Single-Cell RNA Sequencing Data (Version 0.3.0)
2022
cencrne : Consistent Estimation of the Number of Communities via Regularized Network Embedding (Version 1.0.0)
2023
centiserve : Find Graph Centrality Indices (Version 1.0.0)
2017
cepreader : Read 'CEP' and Legacy 'CANOCO' Files (Version 1.2-2)
2018
cgaim : Constrained Groupwise Additive Index Models (Version 1.0.1)
2022
cgam : Constrained Generalized Additive Model (Version 1.21)
2014
chinese.misc : Miscellaneous Tools for Chinese Text Mining and More (Version 0.2.3)
2017
chords : Estimation in Respondent Driven Samples (Version 0.95.4)
2012
ciccr : Causal Inference in Case-Control and Case-Population Studies (Version 0.3.0)
2020
cjoint : AMCE Estimator for Conjoint Experiments (Version 2.1.1)
2014
clarabel : Interior Point Conic Optimization Solver (Version 0.9.0.1)
2023
classGraph : Construct Graphs of S4 Class Hierarchies (Version 0.7-6)
2007
cleanNLP : A Tidy Data Model for Natural Language Processing (Version 3.1.0)
2016
clevr : Clustering and Link Prediction Evaluation in R (Version 0.1.2)
2020
climwin : Climate Window Analysis (Version 1.2.3)
2015
clubSandwich : Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections (Version 0.5.11)
2016
clustTMB : Spatio-Temporal Finite Mixture Model using 'TMB' (Version 0.1.0)
2024
cluster : "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al. (Version 2.1.6)
1999
clustur : Clustering (Version 0.1.0)
0
clustvarsel : Variable Selection for Gaussian Model-Based Clustering (Version 2.3.4)
2006
cmR : Analysis of Cardiac Magnetic Resonance Images (Version 1.1)
2021
cmaRs : Implementation of the Conic Multivariate Adaptive Regression Splines in R (Version 0.1.3)
2021
cmfrec : Collective Matrix Factorization for Recommender Systems (Version 3.5.1-3)
2020
cna : Causal Modeling with Coincidence Analysis (Version 3.6.2)
2014
coalescentMCMC : MCMC Algorithms for the Coalescent (Version 0.4-4)
2012
cobs : Constrained B-Splines (Sparse Matrix Based) (Version 1.3-8)
2002
coca : Cluster-of-Clusters Analysis (Version 1.1.0)
2020
coda.base : A Basic Set of Functions for Compositional Data Analysis (Version 0.5.5)
2017
codingMatrices : Alternative Factor Coding Matrices for Linear Model Formulae (Version 0.4.0)
2016
coglasso : Collaborative Graphical Lasso - Multi-Omics Network Reconstruction (Version 1.0.2)
2024
colorrepel : Repel Visually Similar Colors for Colorblind Users in Various Plots (Version 0.3.0)
2024
colourvision : Colour Vision Models (Version 2.0.4)
2016
comato : Analysis of Concept Maps and Concept Landscapes (Version 1.1)
2014
combat.enigma : Fit and Apply ComBat, LMM, or Prescaling Harmonization for ENIGMA and Other Multisite MRI Data (Version 1.1.1)
2023
combinIT : A Combined Interaction Test for Unreplicated Two-Way Tables (Version 2.0.0)
2022
complexplus : Functions of Complex or Real Variable (Version 2.1)
2016
conText : 'a la Carte' on Text (ConText) Embedding Regression (Version 1.4.3)
2021
conflicted : An Alternative Conflict Resolution Strategy (Version 1.2.0)
2018
conleyreg : Estimations using Conley Standard Errors (Version 0.1.7)
2021
conos : Clustering on Network of Samples (Version 1.5.2)
2021
conquer : Convolution-Type Smoothed Quantile Regression (Version 1.3.3)
2020
control : A Control Systems Toolbox (Version 0.2.5)
2017
coop : Co-Operation: Fast Covariance, Correlation, and Cosine Similarity Operations (Version 0.6-3)
2016
cope : Coverage Probability Excursion (CoPE) Sets (Version 0.2.3)
2015
copula : Multivariate Dependence with Copulas (Version 1.1-4)
2005
corTest : Robust Tests for Equal Correlation (Version 1.0.7)
2018
corpustools : Managing, Querying and Analyzing Tokenized Text (Version 0.5.1)
2017
corrMCT : Correlated Weighted Hochberg (Version 0.2.0)
2024
corrgram : Plot a Correlogram (Version 1.14)
2006
cotram : Count Transformation Models (Version 0.5-2)
2019
countSTAR : Flexible Modeling of Count Data (Version 1.0.2)
2023
countland : Analysis of Biological Count Data, Especially from Single-Cell RNA-Seq (Version 0.1.2)
2022
countsplit : Splitting a Count Matrix into Independent Folds (Version 4.0.0)
2023
covsim : VITA, IG and PLSIM Simulation for Given Covariance and Marginals (Version 1.1.0)
2020
coxme : Mixed Effects Cox Models (Version 2.2-22)
2009
cplm : Compound Poisson Linear Models (Version 0.7-12.1)
2011
cpr : Control Polygon Reduction (Version 0.4.0)
2017
crisp : Fits a Model that Partitions the Covariate Space into Blocks in a Data- Adaptive Way (Version 1.0.0)
2017
crosstalkr : Analysis of Graph-Structured Data with a Focus on Protein-Protein Interaction Networks (Version 1.0.5)
2021
crqa : Unidimensional and Multidimensional Methods for Recurrence Quantification Analysis (Version 2.0.6)
2013
crumble : Flexible and General Mediation Analysis Using Riesz Representers (Version 0.1.0)
2024
csmpv : Biomarker Confirmation, Selection, Modelling, Prediction, and Validation (Version 1.0.3)
2024
csurvey : Constrained Regression for Survey Data (Version 1.9)
2021
cthreshER : Continuous Threshold Expectile Regression (Version 1.1.0)
2016
ctmcmove : Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains (Version 1.2.9)
2015
ctrialsgov : Query Data from U.S. National Library of Medicine's Clinical Trials Database (Version 0.2.5)
2021
ctsem : Continuous Time Structural Equation Modelling (Version 3.10.1)
2015
ctsemOMX : Continuous Time SEM - 'OpenMx' Based Functions (Version 1.0.6)
2020
curephEM : NPMLE for Logistic-Cox Cure-Rate Model (Version 0.3.0)
2020
cvCovEst : Cross-Validated Covariance Matrix Estimation (Version 1.2.2)
2021
cvwrapr : Tools for Cross Validation (Version 1.0)
2021
cxr : A Toolbox for Modelling Species Coexistence in R (Version 1.1.1)
2021
cytominer : Methods for Image-Based Cell Profiling (Version 0.2.2)
2017
dataPreparation : Automated Data Preparation (Version 1.1.1)
2017
dbacf : Autocovariance Estimation via Difference-Based Methods (Version 0.2.8)
2023
dbcsp : Distance-Based Common Spatial Patterns (Version 0.0.2.1)
2021
dclone : Data Cloning and MCMC Tools for Maximum Likelihood Methods (Version 2.3-2)
2009
ddml : Double/Debiased Machine Learning (Version 0.3.0)
2023
ddpca : Diagonally Dominant Principal Component Analysis (Version 1.1)
2019
ddtlcm : Latent Class Analysis with Dirichlet Diffusion Tree Process Prior (Version 0.2.1)
2023
deepNN : Deep Learning (Version 1.2)
2019
deepgp : Bayesian Deep Gaussian Processes using MCMC (Version 1.1.3)
2020
deepregression : Fitting Deep Distributional Regression (Version 1.0.0)
2021
demic : Dynamic Estimator of Microbial Communities (Version 2.0.0)
2024
demu : Optimal Design Emulators via Point Processes (Version 0.3.0)
2018
denoiseR : Regularized Low Rank Matrix Estimation (Version 1.0.2)
2016
denseFLMM : Functional Linear Mixed Models for Densely Sampled Data (Version 0.1.2)
2017
detect : Analyzing Wildlife Data with Detection Error (Version 0.4-6)
2011
dglars : Differential Geometric Least Angle Regression (Version 2.1.7)
2012
dhglm : Double Hierarchical Generalized Linear Models (Version 2.0)
2011
diagL1 : Routines for Fit, Inference and Diagnostics in Linear L1 and LAD Models (Version 1.0.0)
2023
did : Treatment Effects with Multiple Periods and Groups (Version 2.1.2)
2018
did2s : Two-Stage Difference-in-Differences Following Gardner (2021) (Version 1.0.2)
2021
didimputation : Imputation Estimator from Borusyak, Jaravel, and Spiess (2021) (Version 0.3.0)
2021
diffusionMap : Diffusion Map (Version 1.2.0)
2009
diffudist : Diffusion Distance for Complex Networks (Version 1.0.1)
2021
dimRed : A Framework for Dimensionality Reduction (Version 0.2.6)
2017
dineR : Differential Network Estimation in R (Version 1.0.1)
2021
dipw : Debiased Inverse Propensity Score Weighting (Version 0.1.0)
2020
dirttee : Distributional Regression for Time to Event Data (Version 1.0.2)
2022
disaggregation : Disaggregation Modelling (Version 0.4.0)
2019
discSurv : Discrete Time Survival Analysis (Version 2.0.0)
2015
discfrail : Cox Models for Time-to-Event Data with Nonparametric Discrete Group-Specific Frailties (Version 0.1)
2019
disordR : Non-Ordered Vectors (Version 0.9-8.2)
2021
distfreereg : Distribution-Free Goodness-of-Fit Testing for Regression (Version 1.0)
2024
distrom : Distributed Multinomial Regression (Version 1.0.1)
2013
diversityForest : Innovative Complex Split Procedures in Random Forests Through Candidate Split Sampling (Version 0.5.0)
2020
dmm : Dyadic Mixed Model for Pedigree Data (Version 2.1-10)
2015
doBy : Groupwise Statistics, LSmeans, Linear Estimates, Utilities (Version 4.6.24)
2006
dplR : Dendrochronology Program Library in R (Version 1.7.7)
2007
dr4pl : Dose Response Data Analysis using the 4 Parameter Logistic (4pl) Model (Version 2.0.0)
2017
drape : Doubly Robust Average Partial Effects (Version 0.0.1)
2023
drf : Distributional Random Forests (Version 1.1.0)
2020
dsem : Fit Dynamic Structural Equation Models (Version 1.3.0)
2023
dst : Using the Theory of Belief Functions (Version 1.8.0)
2015
dtwclust : Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance (Version 6.0.0)
2015
dualScale : Dual Scaling Analysis of Data (Version 1.0.0)
2014
dyndimred : Dimensionality Reduction Methods in a Common Format (Version 1.0.4)
2019
dyngen : A Multi-Modal Simulator for Spearheading Single-Cell Omics Analyses (Version 1.0.5)
2020
dynr : Dynamic Models with Regime-Switching (Version 0.1.16-105)
2016
dynutils : Common Functionality for the 'dynverse' Packages (Version 1.0.11)
2018
dynwrap : Representing and Inferring Single-Cell Trajectories (Version 1.2.4)
2019
e1071 : Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien (Version 1.7-16)
1999
eBsc : "Empirical Bayes Smoothing Splines with Correlated Errors" (Version 4.17)
2020
eCAR : Eigenvalue CAR Models (Version 0.1.2)
2021
ePCR : Ensemble Penalized Cox Regression for Survival Prediction (Version 0.11.0)
2017
eRm : Extended Rasch Modeling (Version 1.0-6)
2006
easySdcTable : Easy Interface to the Statistical Disclosure Control Package 'sdcTable' Extended with Own Implementation of 'GaussSuppression' (Version 1.0.7)
2016
eatATA : Create Constraints for Small Test Assembly Problems (Version 1.1.2)
2020
econet : Estimation of Parameter-Dependent Network Centrality Measures (Version 1.0.0.1)
2018
economiccomplexity : Computational Methods for Economic Complexity (Version 1.5.0)
2019
ecpc : Flexible Co-Data Learning for High-Dimensional Prediction (Version 3.1.1)
2021
edmcr : Euclidean Distance Matrix Completion Tools (Version 0.2.0)
2017
ef : Modelling Framework for the Estimation of Salmonid Abundance (Version 1.2.0)
2020
epca : Exploratory Principal Component Analysis (Version 1.1.0)
2020
epigrowthfit : Nonlinear Mixed Effects Models of Epidemic Growth (Version 0.15.3)
2024
equateMultiple : Equating of Multiple Forms (Version 1.1.1)
2017
erfe : Fits Expectile Regression for Panel Fixed Effect Model (Version 0.0.1)
2022
ergMargins : Process Analysis for Exponential Random Graph Models (Version 1.3)
2019
ergm.multi : Fit, Simulate and Diagnose Exponential-Family Models for Multiple or Multilayer Networks (Version 0.2.1.1)
2022
espadon : Easy Study of Patient DICOM Data in Oncology (Version 1.8.0)
2022
estimateW : Estimation of Spatial Weight Matrices (Version 0.0.1)
2022
estimators : Parameter Estimation (Version 0.8.5)
2024
eva : Extreme Value Analysis with Goodness-of-Fit Testing (Version 0.2.6)
2015
evalITR : Evaluating Individualized Treatment Rules (Version 1.0.0)
2020
evclust : Evidential Clustering (Version 2.0.3)
2016
eventPred : Event Prediction (Version 0.2.6)
2023
evola : Evolutionary Algorithm (Version 1.0.2)
2024
evolqg : Evolutionary Quantitative Genetics (Version 0.3-4)
2015
evolvability : Calculation of Evolvability Parameters (Version 2.0.0)
2014
excursions : Excursion Sets and Contour Credibility Regions for Random Fields (Version 2.5.8)
2013
expectreg : Expectile and Quantile Regression (Version 0.53)
2010
expm : Matrix Exponential, Log, 'etc' (Version 1.0-0)
2010
eyetrackingR : Eye-Tracking Data Analysis (Version 0.2.1)
2015
ez : Easy Analysis and Visualization of Factorial Experiments (Version 4.4-0)
2009
fGarch : Rmetrics - Autoregressive Conditional Heteroskedastic Modelling (Version 4033.92)
2007
fPASS : Power and Sample Size for Projection Test under Repeated Measures (Version 1.0.0)
2023
fabR : Wrapper Functions Collection Used in Data Pipelines (Version 2.1.0)
2023
fabletools : Core Tools for Packages in the 'fable' Framework (Version 0.5.0)
2019
face : Fast Covariance Estimation for Sparse Functional Data (Version 0.1-7)
2016
factReg : Multi-Environment Genomic Prediction with Penalized Factorial Regression (Version 1.0.0)
2023
fad : Factor Analysis for Data (Version 0.9-1)
2020
fanc : Penalized Likelihood Factor Analysis via Nonconvex Penalty (Version 2.3.11)
2012
fastFMM : Fast Functional Mixed Models using Fast Univariate Inference (Version 0.3.0)
2023
fastLink : Fast Probabilistic Record Linkage with Missing Data (Version 0.6.1)
2017
fastNaiveBayes : Extremely Fast Implementation of a Naive Bayes Classifier (Version 2.2.1)
2019
fastRG : Sample Generalized Random Dot Product Graphs in Linear Time (Version 0.3.2)
2021
fastTopics : Fast Algorithms for Fitting Topic Models and Non-Negative Matrix Factorizations to Count Data (Version 0.6-192)
2022
fastadi : Self-Tuning Data Adaptive Matrix Imputation (Version 0.1.1)
2022
fastcmprsk : Fine-Gray Regression via Forward-Backward Scan (Version 1.24.10)
2019
fastcox : Lasso and Elastic-Net Penalized Cox's Regression in High Dimensions Models using the Cocktail Algorithm (Version 1.1.3)
2012
fastcpd : Fast Change Point Detection via Sequential Gradient Descent (Version 0.14.6)
2023
fastglmpca : Fast Algorithms for Generalized Principal Component Analysis (Version 0.1-103)
2024
fastkqr : A Fast Algorithm for Kernel Quantile Regression (Version 1.0.0)
2024
fbar : An Extensible Approach to Flux Balance Analysis (Version 0.6.0)
2016
fcaR : Formal Concept Analysis (Version 1.2.2)
2020
fdaMocca : Model-Based Clustering for Functional Data with Covariates (Version 0.1-1)
2021
fdaPDE : Physics-Informed Spatial and Functional Data Analysis (Version 1.1-20)
2016
fdaconcur : Concurrent Regression and History Index Models for Functional Data (Version 0.1.3)
2022
fdapace : Functional Data Analysis and Empirical Dynamics (Version 0.6.0)
2016
fdarep : Two-Dimensional FPCA, Marginal FPCA, and Product FPCA for Repeated Functional Data (Version 0.1.1)
2024
fdasrvf : Elastic Functional Data Analysis (Version 2.3.3)
2012
fdesigns : Optimal Experimental Designs for Functional/Dynamic Models (Version 1.0)
2024
fglsnet : A Feasible Generalized Least Squares Estimator for Regression Analysis of Outcomes with Network Dependence (Version 1.0)
2021
fiberLD : Fiber Length Determination (Version 0.1-8)
2019
file2meco : Transform Files to 'microtable' Object with 'microeco' Package (Version 0.9.0)
2021
flacco : Feature-Based Landscape Analysis of Continuous and Constrained Optimization Problems (Version 1.8)
2015
flare : Family of Lasso Regression (Version 1.7.0.2)
2012
flashier : Empirical Bayes Matrix Factorization (Version 1.0.7)
2023
flexrsurv : Flexible Relative Survival Analysis (Version 2.0.18)
2016
flexsurv : Flexible Parametric Survival and Multi-State Models (Version 2.3.2)
2011
flowml : A Backend for a 'nextflow' Pipeline that Performs Machine-Learning-Based Modeling of Biomedical Data (Version 0.1.3)
2023
fmcmc : A friendly MCMC framework (Version 0.5-2)
2019
fmesher : Triangle Meshes and Related Geometry Tools (Version 0.2.0)
2023
foreSIGHT : Systems Insights from Generation of Hydroclimatic Timeseries (Version 1.2.0)
2018
fossilbrush : Automated Cleaning of Fossil Occurrence Data (Version 1.0.5)
2022
frailtyEM : Fitting Frailty Models with the EM Algorithm (Version 1.0.1)
2017
frailtyHL : Frailty Models via Hierarchical Likelihood (Version 2.3)
2011
frechet : Statistical Analysis for Random Objects and Non-Euclidean Data (Version 0.3.0)
2020
freebird : Estimation and Inference for High Dimensional Mediation and Surrogate Analysis (Version 1.0)
2022
fssemR : Fused Sparse Structural Equation Models to Jointly Infer Gene Regulatory Network (Version 0.1.8)
2019
funStatTest : Statistical Testing for Functional Data (Version 1.0.3)
2023
funcharts : Functional Control Charts (Version 1.5.0)
2021
fundiversity : Easy Computation of Functional Diversity Indices (Version 1.1.1)
2021
funrar : Functional Rarity Indices Computation (Version 1.5.0)
2016
fuser : Fused Lasso for High-Dimensional Regression over Groups (Version 1.0.1)
2017
gKRLS : Generalized Kernel Regularized Least Squares (Version 1.0.4)
2023
gMCP : Graph Based Multiple Comparison Procedures (Version 0.8-17)
2010
gMOIP : Tools for 2D and 3D Plots of Single and Multi-Objective Linear/Integer Programming Models (Version 1.5.4)
2017
gRbase : A Package for Graphical Modelling in R (Version 2.0.3)
2004
gRim : Graphical Interaction Models (Version 0.3.4)
2011
gTestsMulti : New Graph-Based Multi-Sample Tests (Version 0.1.1)
2022
gWQS : Generalized Weighted Quantile Sum Regression (Version 3.0.5)
2016
galamm : Generalized Additive Latent and Mixed Models (Version 0.2.1)
2023
gallery : Generate Test Matrices for Numerical Experiments (Version 1.0.0)
2024
gamlr : Gamma Lasso Regression (Version 1.13-8)
2013
gamlss.lasso : Extra Lasso-Type Additive Terms for GAMLSS (Version 1.0-1)
2021
gamm4 : Generalized Additive Mixed Models using 'mgcv' and 'lme4' (Version 0.2-6)
2009
gammi : Generalized Additive Mixed Model Interface (Version 0.1)
2024
gap : Genetic Analysis Package (Version 1.6)
2004
gasmodel : Generalized Autoregressive Score Models (Version 0.6.0)
2022
gasper : Graph Signal Processing (Version 1.1.6)
2020
gbmt : Group-Based Multivariate Trajectory Modeling (Version 0.1.3)
2021
gcKrig : Analysis of Geostatistical Count Data using Gaussian Copulas (Version 1.1.8)
2016
gcbd : 'GPU'/CPU Benchmarking in Debian-Based Systems (Version 0.2.7)
2010
gcdnet : The (Adaptive) LASSO and Elastic Net Penalized Least Squares, Logistic Regression, Hybrid Huberized Support Vector Machines, Squared Hinge Loss Support Vector Machines and Expectile Regression using a Fast Generalized Coordin (Version 1.0.6)
2012
gdim : Estimate Graph Dimension using Cross-Validated Eigenvalues (Version 0.1.0)
2023
gdistance : Distances and Routes on Geographical Grids (Version 1.6.4)
2011
gear : Geostatistical Analysis in R (Version 0.3.4)
2015
geeM : Solve Generalized Estimating Equations (Version 0.10.1)
2012
geeasy : Solve Generalized Estimating Equations for Clustered Data (Version 0.1.2)
2022
geecure : Marginal Proportional Hazards Mixture Cure Models with Generalized Estimating Equations (Version 1.0-6)
2017
geex : An API for M-Estimation (Version 1.1.1)
2017
gemma2 : GEMMA Multivariate Linear Mixed Model (Version 0.1.3)
2019
gemtc : Network Meta-Analysis Using Bayesian Methods (Version 1.0-2)
2012
gen3sis : General Engine for Eco-Evolutionary Simulations (Version 1.5.11)
2020
genlasso : Path Algorithm for Generalized Lasso Problems (Version 1.6.1)
2012
genscore : Generalized Score Matching Estimators (Version 1.0.2.2)
2020
geommc : Geometric Markov Chain Sampling (Version 0.1.1)
2024
geomorph : Geometric Morphometric Analyses of 2D and 3D Landmark Data (Version 4.0.8)
2012
geostan : Bayesian Spatial Analysis (Version 0.7.0)
2022
geostatsp : Geostatistical Modelling with Likelihood and Bayes (Version 2.0.6)
2013
gesso : Hierarchical GxE Interactions in a Regularized Regression Model (Version 1.0.2)
2021
gets : General-to-Specific (GETS) Modelling and Indicator Saturation Methods (Version 0.38)
2014
getspanel : General-to-Specific Modelling of Panel Data (Version 0.2.0)
2023
ggbrain : Create Images of Volumetric Brain Data in NIfTI Format Using 'ggplot2' Syntax (Version 0.8.1)
2022
ggeffects : Create Tidy Data Frames of Marginal Effects for 'ggplot' from Model Outputs (Version 1.7.2)
2017
ggmix : Variable Selection in Linear Mixed Models for SNP Data (Version 0.0.2)
2020
ggsector : Draw Sectors (Version 1.7.0)
2022
gibasa : An Alternative 'Rcpp' Wrapper of 'MeCab' (Version 1.1.1)
2023
gif : Graphical Independence Filtering (Version 0.1.1)
2020
gllvm : Generalized Linear Latent Variable Models (Version 1.4.3)
2017
glmm : Generalized Linear Mixed Models via Monte Carlo Likelihood Approximation (Version 1.4.5)
2015
glmmLasso : Variable Selection for Generalized Linear Mixed Models by L1-Penalized Estimation (Version 1.6.3)
2011
glmmPen : High Dimensional Penalized Generalized Linear Mixed Models (pGLMM) (Version 1.5.4.8)
2022
glmmTMB : Generalized Linear Mixed Models using Template Model Builder (Version 1.1.10)
2017
glmmrBase : Generalised Linear Mixed Models in R (Version 0.10.5)
2022
glmmrOptim : Approximate Optimal Experimental Designs Using Generalised Linear Mixed Models (Version 0.3.5)
2023
glmnet : Lasso and Elastic-Net Regularized Generalized Linear Models (Version 4.1-8)
2008
glmnetUtils : Utilities for 'Glmnet' (Version 1.1.9)
2017
glmnetr : Nested Cross Validation for the Relaxed Lasso and Other Machine Learning Models (Version 0.5-4)
2022
glmpca : Dimension Reduction of Non-Normally Distributed Data (Version 0.2.0)
2019
glober : Estimating Functions with Multivariate B-Splines (Version 1.0)
2023
gmfamm : Generalized Multivariate Functional Additive Models (Version 0.1.0)
2024
gmodels : Various R Programming Tools for Model Fitting (Version 2.19.1)
2005
gmtFD : General Multiple Tests for Univariate and Multivariate Functional Data (Version 0.1.0)
2024
gmwmx : Estimate Functional and Stochastic Parameters of Linear Models with Correlated Residuals (Version 1.0.3)
2022
gnm : Generalized Nonlinear Models (Version 1.1-5)
2005
goat : Gene Set Analysis Using the Gene Set Ordinal Association Test (Version 1.0)
2024
gofcat : Goodness-of-Fit Measures for Categorical Response Models (Version 0.1.2)
2022
goric : Generalized Order-Restricted Information Criterion (Version 1.1-2)
2011
gpboost : Combining Tree-Boosting with Gaussian Process and Mixed Effects Models (Version 1.5.1.2)
2021
gplite : General Purpose Gaussian Process Modelling (Version 0.13.0)
2021
gps : General P-Splines (Version 1.2)
2022
grafify : Easy Graphs for Data Visualisation and Linear Models for ANOVA (Version 4.0.1)
2022
grandR : Comprehensive Analysis of Nucleotide Conversion Sequencing Data (Version 0.2.5)
2022
graph4lg : Build Graphs for Landscape Genetics Analysis (Version 1.8.0)
2019
graphicalVAR : Graphical VAR for Experience Sampling Data (Version 0.3.4)
2015
graphsim : Simulate Expression Data from 'igraph' Networks (Version 1.0.3)
2020
greed : Clustering and Model Selection with the Integrated Classification Likelihood (Version 0.6.1)
2021
gremlin : Mixed-Effects REML Incorporating Generalized Inverses (Version 1.1.0)
2018
grf : Generalized Random Forests (Version 2.3.2)
2017
growthrate : Bayesian reconstruction of growth velocity (Version 1.3)
2011
grpCox : Penalized Cox Model for High-Dimensional Data with Grouped Predictors (Version 1.0.2)
2020
grpreg : Regularization Paths for Regression Models with Grouped Covariates (Version 3.5.0)
2008
gsbm : Estimate Parameters in the Generalized SBM (Version 0.2.2)
2020
gslnls : GSL Multi-Start Nonlinear Least-Squares Fitting (Version 1.3.2)
2021
gustave : A User-Oriented Statistical Toolkit for Analytical Variance Estimation (Version 1.0.0)
2018
gwid : Genome-Wide Identity-by-Descent (Version 0.3.0)
2023
h2o : R Interface for the 'H2O' Scalable Machine Learning Platform (Version 3.44.0.3)
2014
h2o4gpu : Interface to 'H2O4GPU' (Version 0.3.3)
2018
hIRT : Hierarchical Item Response Theory Models (Version 0.3.0)
2017
hal9001 : The Scalable Highly Adaptive Lasso (Version 0.4.6)
2020
hamlet : Hierarchical Optimal Matching and Machine Learning Toolbox (Version 0.9.6)
2014
hardhat : Construct Modeling Packages (Version 1.4.0)
2019
harmony : Fast, Sensitive, and Accurate Integration of Single Cell Data (Version 1.2.1)
2021
hbsae : Hierarchical Bayesian Small Area Estimation (Version 1.2)
2012
hdf5r.Extra : Extensions for 'HDF5' R Interfaces (Version 0.1.0)
2023
hdi : High-Dimensional Inference (Version 0.1-9)
2014
hero : Spatio-Temporal (Hero) Sandwich Smoother (Version 0.6)
2018
heteromixgm : Copula Graphical Models for Heterogeneous Mixed Data (Version 2.0.2)
2023
hglm.data : Data for the 'hglm' Package (Version 1.0-1)
2014
hglm : Hierarchical Generalized Linear Models (Version 2.2-1)
2010
hibayes : Individual-Level, Summary-Level and Single-Step Bayesian Regression Model (Version 3.0.3)
2021
hierSDR : Hierarchical Sufficient Dimension Reduction (Version 0.1)
2021
hierarchicalSets : Set Data Visualization Using Hierarchies (Version 1.0.4)
2016
highriskzone : Determining and Evaluating High-Risk Zones (Version 1.4.9)
2012
higrad : Statistical Inference for Online Learning and Stochastic Approximation via HiGrad (Version 0.1.0)
2018
historicalborrow : Non-Longitudinal Bayesian Historical Borrowing Models (Version 1.1.0)
2022
historicalborrowlong : Longitudinal Bayesian Historical Borrowing Models (Version 0.1.0)
2022
hmclearn : Fit Statistical Models Using Hamiltonian Monte Carlo (Version 0.0.5)
2020
hmmTMB : Fit Hidden Markov Models using Template Model Builder (Version 1.0.2)
2023
hpfilter : The One- And Two-Sided Hodrick-Prescott Filter (Version 1.0.2)
2023
hrqglas : Group Variable Selection for Quantile and Robust Mean Regression (Version 1.1.0)
2021
hscovar : Calculation of Covariance Between Markers for Half-Sib Families (Version 0.4.2)
2020
hsem : Hierarchical Structural Equation Model (Version 1.0)
2021
hspm : Heterogeneous Spatial Models (Version 1.1)
2022
hsrecombi : Estimation of Recombination Rate and Maternal LD in Half-Sibs (Version 1.0.1)
2020
hts : Hierarchical and Grouped Time Series (Version 6.0.3)
2010
huge : High-Dimensional Undirected Graph Estimation (Version 1.3.5)
2010
hySAINT : Hybrid Genetic and Simulated Annealing Algorithm for High Dimensional Linear Models with Interaction Effects (Version 1.2.1)
2024
hydra : Hyperbolic Embedding (Version 0.1.0)
2019
hypr : Hypothesis Matrix Translation (Version 0.2.8)
2019
iAdapt : Two-Stage Adaptive Dose-Finding Clinical Trial Design (Version 2.0.1)
2019
iCARH : Integrative Conditional Autoregressive Horseshoe Model (Version 2.0.2.1)
2019
iCellR : Analyzing High-Throughput Single Cell Sequencing Data (Version 1.6.7)
2019
iGraphMatch : Tools for Graph Matching (Version 2.0.5)
2021
iMRMC : Multi-Reader, Multi-Case Analysis Methods (ROC, Agreement, and Other Metrics) (Version 2.1.0)
2017
iPRISM : Intelligent Predicting Response to Cancer Immunotherapy Through Systematic Modeling (Version 0.1.1)
2024
iTOP : Inferring the Topology of Omics Data (Version 1.0.2)
2018
ib : Bias Correction via Iterative Bootstrap (Version 0.2.0)
2020
ibmdbR : IBM in-Database Analytics for R (Version 1.51.0)
2014
icdGLM : EM by the Method of Weights for Incomplete Categorical Data in Generlized Linear Models (Version 1.0.0)
2016
igraph : Network Analysis and Visualization (Version 2.1.1)
2006
immcp : Poly-Pharmacology Toolkit for Traditional Chinese Medicine Research (Version 1.0.3)
2020
inca : Integer Calibration (Version 0.0.4)
2016
incidentally : Generates Incidence Matrices and Bipartite Graphs (Version 1.0.2)
2022
inferCSN : Inferring Cell-Specific Gene Regulatory Network (Version 1.0.8)
2023
influence.ME : Tools for Detecting Influential Data in Mixed Effects Models (Version 0.9-9)
2009
influenceR : Software Tools to Quantify Structural Importance of Nodes in a Network (Version 0.1.5)
2015
inlabru : Bayesian Latent Gaussian Modelling using INLA and Extensions (Version 2.11.1)
2017
insight : Easy Access to Model Information for Various Model Objects (Version 0.20.5)
2019
intensitynet : Intensity Analysis of Spatial Point Patterns on Complex Networks (Version 1.4.0)
2022
invertiforms : Invertible Transforms for Matrices (Version 0.1.1)
2022
irlba : Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices (Version 2.3.5.1)
2011
irtQ : Unidimensional Item Response Theory Modeling (Version 0.2.1)
2023
islasso : The Induced Smoothed Lasso (Version 1.5.2)
2019
isodistrreg : Isotonic Distributional Regression (IDR) (Version 0.1.0)
2021
isokernel : Isolation Kernel (Version 0.1.0)
2021
isotonic.pen : Penalized Isotonic Regression in one and two dimensions (Version 1.0)
2014
isotree : Isolation-Based Outlier Detection (Version 0.6.1-1)
2019
ivdesign : Hypothesis Testing in Cluster-Randomized Encouragement Designs (Version 0.1.0)
2020
ivmodel : Statistical Inference and Sensitivity Analysis for Instrumental Variables Model (Version 1.9.1)
2015
ivmte : Instrumental Variables: Extrapolation by Marginal Treatment Effects (Version 1.4.0)
2019
jewel : Graphical Models Estimation from Multiple Sources (Version 2.0.2)
2023
joineRML : Joint Modelling of Multivariate Longitudinal Data and Time-to-Event Outcomes (Version 0.4.6)
2016
jordan : A Suite of Routines for Working with Jordan Algebras (Version 1.0-6)
2021
jrSiCKLSNMF : Multimodal Single-Cell Omics Dimensionality Reduction (Version 1.2.1)
2023
kanjistat : A Statistical Framework for the Analysis of Japanese Kanji Characters (Version 0.14.1)
2023
kcmeans : Conditional Expectation Function Estimation with K-Conditional-Means (Version 0.1.0)
2023
keyATM : Keyword Assisted Topic Models (Version 0.5.2)
2020
kgraph : Knowledge Graphs Constructions and Visualizations (Version 1.0.0)
2024
kinship2 : Pedigree Functions (Version 1.9.6.1)
2011
kknn : Weighted k-Nearest Neighbors (Version 1.3.1)
2004
klic : Kernel Learning Integrative Clustering (Version 1.0.4)
2020
knn.covertree : An Accurate kNN Implementation with Multiple Distance Measures (Version 1.0)
2019
knockoff : The Knockoff Filter for Controlled Variable Selection (Version 0.3.6)
2014
koRpus : Text Analysis with Emphasis on POS Tagging, Readability, and Lexical Diversity (Version 0.13-8)
2012
konfound : Quantify the Robustness of Causal Inferences (Version 1.0.2)
2018
ks : Kernel Smoothing (Version 1.14.3)
2005
l1spectral : An L1-Version of the Spectral Clustering (Version 0.99.6)
2021
landsepi : Landscape Epidemiology and Evolution (Version 1.5.1)
2018
latentFactoR : Data Simulation Based on Latent Factors (Version 0.0.6)
2022
latentcor : Fast Computation of Latent Correlations for Mixed Data (Version 2.0.1)
2021
lavaSearch2 : Tools for Model Specification in the Latent Variable Framework (Version 2.0.3)
2018
lava : Latent Variable Models (Version 1.8.0)
2012
lcpm : Ordinal Outcomes: Generalized Linear Models with the Log Link (Version 0.1.1)
2019
lda : Collapsed Gibbs Sampling Methods for Topic Models (Version 1.5.2)
2009
leakyIV : Leaky Instrumental Variables (Version 0.0.1)
2024
leastcostpath : Modelling Pathways and Movement Potential Within a Landscape (Version 2.0.12)
2020
lefko3 : Historical and Ahistorical Population Projection Matrix Analysis (Version 6.3.1)
2020
leiden : R Implementation of Leiden Clustering Algorithm (Version 0.4.3.1)
2019
leidenAlg : Implements the Leiden Algorithm via an R Interface (Version 1.1.4)
2020
lfactors : Factors with Levels (Version 1.0.4)
2015
lfe : Linear Group Fixed Effects (Version 3.1.0)
2011
lgcp : Log-Gaussian Cox Process (Version 2.0)
2011
lightgbm : Light Gradient Boosting Machine (Version 4.5.0)
2020
lime : Local Interpretable Model-Agnostic Explanations (Version 0.5.3)
2017
lineartestr : Linear Specification Testing (Version 1.0.0)
2020
lingmatch : Linguistic Matching and Accommodation (Version 1.0.7)
2021
literanger : Random Forests for Multiple Imputation Based on 'ranger' (Version 0.1.1)
2023
lmds : Landmark Multi-Dimensional Scaling (Version 0.1.0)
2019
lme4breeding : Relationship-Based Mixed-Effects Models (Version 1.0.40)
2024
lme4 : Linear Mixed-Effects Models using 'Eigen' and S4 (Version 1.1-35.5)
2003
lmeInfo : Information Matrices for 'lmeStruct' and 'glsStruct' Objects (Version 0.3.2)
2020
lmeresampler : Bootstrap Methods for Nested Linear Mixed-Effects Models (Version 0.2.4)
2016
lmfor : Functions for Forest Biometrics (Version 1.6)
2015
locStra : Fast Implementation of (Local) Population Stratification Methods (Version 1.9)
2019
logbin : Relative Risk Regression Using the Log-Binomial Model (Version 2.0.5)
2014
logcondiscr : Estimate a Log-Concave Probability Mass Function from Discrete i.i.d. Observations (Version 1.0.6)
2011
logistf : Firth's Bias-Reduced Logistic Regression (Version 1.26.0)
2003
lognorm : Functions for the Lognormal Distribution (Version 0.1.10)
2018
lolog : Latent Order Logistic Graph Models (Version 1.3.1)
2018
lotri : A Simple Way to Specify Symmetric, Block Diagonal Matrices (Version 1.0.0)
2019
lpcde : Boundary Adaptive Local Polynomial Conditional Density Estimator (Version 0.1.4)
2022
lsbs : Bandwidth Selection for Level Sets and HDR Estimation (Version 0.1)
2018
ltmle : Longitudinal Targeted Maximum Likelihood Estimation (Version 1.3-0)
2013
ludic : Linkage Using Diagnosis Codes (Version 0.2.0)
2016
lvnet : Latent Variable Network Modeling (Version 0.3.5)
2016
madness : Automatic Differentiation of Multivariate Operations (Version 0.2.8)
2015
madrat : May All Data be Reproducible and Transparent (MADRaT) * (Version 3.6.4)
2017
makemyprior : Intuitive Construction of Joint Priors for Variance Parameters (Version 1.2.2)
2021
manifold : Operations for Riemannian Manifolds (Version 0.1.1)
2022
maotai : Tools for Matrix Algebra, Optimization and Inference (Version 0.2.5)
2019
mapfit : PH/MAP Parameter Estimation (Version 1.0.0)
2015
marcher : Migration and Range Change Estimation in R (Version 0.0-2)
2017
marked : Mark-Recapture Analysis for Survival and Abundance Estimation (Version 1.2.8)
2013
markovchain : Easy Handling Discrete Time Markov Chains (Version 0.9.5)
2013
matrixset : Creating, Manipulating and Annotating Matrix Ensemble (Version 0.3.0)
2023
matsbyname : An Implementation of Matrix Mathematics that Respects Row and Column Names (Version 0.6.10)
2019
matsindf : Matrices in Data Frames (Version 0.4.8)
2019
mboost : Model-Based Boosting (Version 2.9-11)
2006
mbr : Mass Balance Reconstruction (Version 0.0.1)
2021
mbsts : Multivariate Bayesian Structural Time Series (Version 3.0)
2020
mcen : Multivariate Cluster Elastic Net (Version 1.2.1)
2018
mclogit : Multinomial Logit Models, with or without Random Effects or Overdispersion (Version 0.9.6)
2010
mcmcsae : Markov Chain Monte Carlo Small Area Estimation (Version 0.7.7)
2020
mcompanion : Objects and Methods for Multi-Companion Matrices (Version 0.6)
2017
mdatools : Multivariate Data Analysis for Chemometrics (Version 0.14.2)
2014
mdhglm : Multivariate Double Hierarchical Generalized Linear Models (Version 1.8)
2016
mdw : Maximum Diversity Weighting (Version 2024.8-1)
2017
medflex : Flexible Mediation Analysis Using Natural Effect Models (Version 0.6-10)
2014
mediation : Causal Mediation Analysis (Version 4.5.0)
2009
mefa : Multivariate Data Handling in Ecology and Biogeography (Version 3.2-9)
2007
mefa4 : Multivariate Data Handling with S4 Classes and Sparse Matrices (Version 0.3-11)
2011
merDeriv : Case-Wise and Cluster-Wise Derivatives for Mixed Effects Models (Version 0.2-4)
2017
merTools : Tools for Analyzing Mixed Effect Regression Models (Version 0.6.2)
2015
metaBLUE : BLUE for Combining Location and Scale Information in a Meta-Analysis (Version 1.0.0)
2018
metaSDTreg : Regression Models for Meta Signal Detection Theory (Version 0.2.2)
2019
metaSEM : Meta-Analysis using Structural Equation Modeling (Version 1.5.0)
2015
metafor : Meta-Analysis Package for R (Version 4.6-0)
2009
metafuse : Fused Lasso Approach in Regression Coefficient Clustering (Version 2.0-1)
2015
metagear : Comprehensive Research Synthesis Tools for Systematic Reviews and Meta-Analysis (Version 0.7)
2015
metanetwork : Handling and Representing Trophic Networks in Space and Time (Version 0.7.0)
2022
metrix : Water Quality Metrics Calculator (Version 1.1.0)
2022
mfaces : Fast Covariance Estimation for Multivariate Sparse Functional Data (Version 0.1-4)
2021
mfpp : 'Matrix-Based Flexible Project Planning' (Version 0.0.7)
2022
mgcv : Mixed GAM Computation Vehicle with Automatic Smoothness Estimation (Version 1.9-1)
2000
mglasso : Multiscale Graphical Lasso (Version 0.1.2)
2022
mgss : A Matrix-Free Multigrid Preconditioner for Spline Smoothing (Version 1.2)
2021
mgwrsar : GWR and MGWR with Spatial Autocorrelation (Version 1.0.5)
2018
mi : Missing Data Imputation and Model Checking (Version 1.1)
2008
miRNAss : Genome-Wide Discovery of Pre-miRNAs with few Labeled Examples (Version 1.5)
2017
miceadds : Some Additional Multiple Imputation Functions, Especially for 'mice' (Version 3.17-44)
2014
micemd : Multiple Imputation by Chained Equations with Multilevel Data (Version 1.10.0)
2017
midasr : Mixed Data Sampling Regression (Version 0.8)
2013
midasml : Estimation and Prediction Methods for High-Dimensional Mixed Frequency Time Series Data (Version 0.1.10)
2020
mildsvm : Multiple-Instance Learning with Support Vector Machines (Version 0.4.0)
2022
mind : Multivariate Model Based Inference for Domains (Version 1.1.0)
2021
mirt : Multidimensional Item Response Theory (Version 1.42)
2011
misclassGLM : Computation of Generalized Linear Models with Misclassified Covariates Using Side Information (Version 0.3.5)
2016
missCompare : Intuitive Missing Data Imputation Framework (Version 1.0.3)
2019
missSBM : Handling Missing Data in Stochastic Block Models (Version 1.0.4)
2019
mistral : Methods in Structural Reliability (Version 2.2.2)
2013
misty : Miscellaneous Functions 'T. Yanagida' (Version 0.6.8)
2020
mixKernel : Omics Data Integration Using Kernel Methods (Version 0.9-1)
2017
mixedCCA : Sparse Canonical Correlation Analysis for High-Dimensional Mixed Data (Version 1.6.2)
2020
mixgb : Multiple Imputation Through 'XGBoost' (Version 1.0.2)
2022
mixhvg : Mixture of Multiple Highly Variable Feature Selection Methods (Version 1.0.1)
2022
mlapi : Abstract Classes for Building 'scikit-learn' Like API (Version 0.1.1)
2017
mlergm : Multilevel Exponential-Family Random Graph Models (Version 0.8)
2018
mlfit : Iterative Proportional Fitting Algorithms for Nested Structures (Version 0.5.3)
2021
mlmi : Maximum Likelihood Multiple Imputation (Version 1.1.2)
2019
mlmm.gwas : Pipeline for GWAS Using MLMM (Version 1.0.6)
2018
mlmts : Machine Learning Algorithms for Multivariate Time Series (Version 1.1.2)
2022
mlr3 : Machine Learning in R - Next Generation (Version 0.21.1)
2019
mlt.docreg : Most Likely Transformations: Documentation and Regression Tests (Version 1.1-9)
2016
mlt : Most Likely Transformations (Version 1.6-0)
2016
mltools : Machine Learning Tools (Version 0.3.5)
2016
mme : Multinomial Mixed Effects Models (Version 0.1-6)
2014
mmmgee : Simultaneous Inference for Multiple Linear Contrasts in GEE Models (Version 1.20)
2018
mmrm : Mixed Models for Repeated Measures (Version 0.3.14)
2022
mnda : Multiplex Network Differential Analysis (MNDA) (Version 1.0.9)
2023
modgo : Mock Data Generation (Version 1.0.1)
2024
modnets : Modeling Moderated Networks (Version 0.9.0)
2021
mombf : Model Selection with Bayesian Methods and Information Criteria (Version 3.5.4)
2008
mosaic : Project MOSAIC Statistics and Mathematics Teaching Utilities (Version 1.9.1)
2011
mosaicCalc : R-Language Based Calculus Operations for Teaching (Version 0.6.4)
2017
motifcluster : Motif-Based Spectral Clustering of Weighted Directed Networks (Version 0.2.3)
2020
moult : Models for Analysing Moult in Birds (Version 2.3.1)
2011
movecost : Calculation of Slope-Dependant Accumulated Cost Surface, Least-Cost Paths, Least-Cost Corridors, Least-Cost Networks Related to Human Movement Across the Landscape (Version 2.1)
2018
mppR : Multi-Parent Population QTL Analysis (Version 1.5.0)
2018
msaenet : Multi-Step Adaptive Estimation Methods for Sparse Regressions (Version 3.1.2)
2016
mstDIF : A Collection of DIF Tests for Multistage Tests (Version 0.1.8)
2020
multiAssetOptions : Finite Difference Method for Multi-Asset Option Valuation (Version 0.1-2)
2015
multiFANOVA : Multiple Contrast Tests for Functional Data (Version 0.1.0)
2023
multibiplotGUI : Multibiplot Analysis in R (Version 1.1)
2014
multimark : Capture-Mark-Recapture Analysis using Multiple Non-Invasive Marks (Version 2.1.6)
2015
multiness : MULTIplex NEtworks with Shared Structure (Version 1.0.2)
2022
multinma : Bayesian Network Meta-Analysis of Individual and Aggregate Data (Version 0.7.2)
2020
multivar : Penalized Estimation of Multiple-Subject Vector Autoregressive (multi-VAR) Models (Version 1.1.0)
2020
multivarious : Extensible Data Structures for Multivariate Analysis (Version 0.2.0)
2024
multiview : Cooperative Learning for Multi-View Analysis (Version 0.8)
2022
mvSLOUCH : Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses (Version 2.7.6)
2013
mvgam : Multivariate (Dynamic) Generalized Additive Models (Version 1.1.3)
2024
mvglmmRank : Multivariate Generalized Linear Mixed Models for Ranking Sports Teams (Version 1.2-4)
2014
mvord : Multivariate Ordinal Regression Models (Version 1.2.5)
2017
mvpd : Multivariate Product Distributions for Elliptically Contoured Distributions (Version 0.0.4)
2022
mvrsquared : Compute the Coefficient of Determination for Vector or Matrix Outcomes (Version 0.1.5)
2020
nadiv : (Non)Additive Genetic Relatedness Matrices (Version 2.18.0)
2011
naivebayes : High Performance Implementation of the Naive Bayes Algorithm (Version 1.0.0)
2017
natural : Estimating the Error Variance in a High-Dimensional Linear Model (Version 0.9.0)
2018
nda : Generalized Network-Based Dimensionality Reduction and Analysis (Version 0.1.15)
2022
ndi : Neighborhood Deprivation Indices (Version 0.1.5)
2022
neat : Efficient Network Enrichment Analysis Test (Version 1.2.4)
2016
nebula : Negative Binomial Mixed Models Using Large-Sample Approximation for Differential Expression Analysis of ScRNA-Seq Data (Version 1.5.3)
2022
net4pg : Handle Ambiguity of Protein Identifications from Shotgun Proteomics (Version 0.1.1)
2021
netCoin : Interactive Analytic Networks (Version 2.0.84)
2016
netShiny : Tool for Comparison and Visualization of Multiple Networks (Version 1.0)
2022
netcontrol : Control Theory Methods for Networks (Version 0.1)
2020
netcom : NETwork COMparison Inference (Version 2.1.7)
2017
netdiffuseR : Analysis of Diffusion and Contagion Processes on Networks (Version 1.22.6)
2016
netgwas : Network-Based Genome Wide Association Studies (Version 1.14.3)
2017
netgsa : Network-Based Gene Set Analysis (Version 4.0.5)
2014
netmediate : Micro-Macro Analysis for Social Networks (Version 1.0.1)
2022
netrankr : Analyzing Partial Rankings in Networks (Version 1.2.3)
2018
netregR : Regression of Network Responses (Version 1.0.1)
2018
netseer : Graph Prediction from a Graph Time Series (Version 0.1.0)
2024
nett : Network Analysis and Community Detection (Version 1.0.0)
2022
networkR : Network Analysis and Visualization (Version 0.1.2)
2018
networktree : Recursive Partitioning of Network Models (Version 1.0.1)
2018
neuroim : Data Structures and Handling for Neuroimaging Data (Version 0.0.6)
2014
newsmap : Semi-Supervised Model for Geographical Document Classification (Version 0.9.0)
2018
nlmixr2est : Nonlinear Mixed Effects Models in Population PK/PD, Estimation Routines (Version 3.0.1)
2022
nlmm : Generalized Laplace Mixed-Effects Models (Version 1.1.0)
2020
nlpsem : Linear and Nonlinear Longitudinal Process in Structural Equation Modeling Framework (Version 0.3)
2023
nlraa : Nonlinear Regression for Agricultural Applications (Version 1.9.7)
2020
nmathresh : Thresholds and Invariant Intervals for Network Meta-Analysis (Version 0.1.6)
2018
nmslibR : Non Metric Space (Approximate) Library (Version 1.0.7)
2018
nonlinearTseries : Nonlinear Time Series Analysis (Version 0.3.1)
2013
nonprobsvy : Inference Based on Non-Probability Samples (Version 0.1.0)
2024
nopaco : Non-Parametric Concordance Coefficient (Version 1.0.9)
2017
norMmix : Direct MLE for Multivariate Normal Mixture Distributions (Version 0.2-0)
2024
npmr : Nuclear Penalized Multinomial Regression (Version 1.3.1)
2016
nutriNetwork : Structure Learning with Copula Graphical Model (Version 0.1.2)
2019
numbat : Haplotype-Aware CNV Analysis from scRNA-Seq (Version 1.4.2)
2022
nvmix : Multivariate Normal Variance Mixtures (Version 0.1-1)
2018
ocf : Ordered Correlation Forest (Version 1.0.1)
2023
oem : Orthogonalizing EM: Penalized Regression for Big Tall Data (Version 2.0.12)
2012
ompr.roi : A Solver for 'ompr' that Uses the R Optimization Infrastructure ('ROI') (Version 1.0.2)
2017
ompr : Model and Solve Mixed Integer Linear Programs (Version 1.0.4)
2017
ondisc : Fast, Universal, and Intuitive Computing on Large-Scale Single-Cell Data (Version 1.0.0)
2021
onion : Octonions and Quaternions (Version 1.5-3)
2005
oosse : Out-of-Sample R² with Standard Error Estimation (Version 1.0.11)
2023
oppr : Optimal Project Prioritization (Version 1.0.4)
2019
optBiomarker : Estimation of Optimal Number of Biomarkers for Two-Group Microarray Based Classifications at a Given Error Tolerance Level for Various Classification Rules (Version 1.0-28)
2009
optbdmaeAT : Optimal Block Designs for Two-Colour cDNA Microarray Experiments (Version 1.0.1)
2017
optiSel : Optimum Contribution Selection and Population Genetics (Version 2.0.9)
2016
optiSolve : Linear, Quadratic, and Rational Optimization (Version 1.0)
2017
optimbase : R Port of the 'Scilab' Optimbase Module (Version 1.0-10)
2010
optrcdmaeAT : Optimal Row-Column Designs for Two-Colour cDNA Microarray Experiments (Version 1.0.0)
2017
optweight : Targeted Stable Balancing Weights Using Optimization (Version 0.2.5)
2018
opusminer : OPUS Miner Algorithm for Filtered Top-k Association Discovery (Version 0.1-1)
2017
ordgam : Additive Model for Ordinal Data using Laplace P-Splines (Version 0.9.1)
2023
ordinal : Regression Models for Ordinal Data (Version 2023.12-4.1)
2010
oscar : Optimal Subset Cardinality Regression (OSCAR) Models Using the L0-Pseudonorm (Version 1.2.1)
2022
osqp : Quadratic Programming Solver using the 'OSQP' Library (Version 0.6.3.3)
2018
pPCA : Partial Principal Component Analysis of Partitioned Large Sparse Matrices (Version 1.1)
2024
pagoda2 : Single Cell Analysis and Differential Expression (Version 1.0.12)
2021
palasso : Sparse Regression with Paired Covariates (Version 1.0.0)
2018
panelvar : Panel Vector Autoregression (Version 0.5.5)
2018
parTimeROC : Parametric Time-Dependent Receiver Operating Characteristic (Version 0.1.0)
2024
parglm : Parallel GLM (Version 0.1.7)
2018
parameters : Processing of Model Parameters (Version 0.23.0)
2019
parsnip : A Common API to Modeling and Analysis Functions (Version 1.2.1)
2018
pbkrtest : Parametric Bootstrap, Kenward-Roger and Satterthwaite Based Methods for Test in Mixed Models (Version 0.5.3)
2011
pcFactorStan : Stan Models for the Paired Comparison Factor Model (Version 1.5.4)
2019
pcalg : Methods for Graphical Models and Causal Inference (Version 2.7-12)
2006
pcgen : Reconstruction of Causal Networks for Data with Random Genetic Effects (Version 0.2.0)
2018
pcts : Periodically Correlated and Periodically Integrated Time Series (Version 0.15.7)
2020
pdynmc : Moment Condition Based Estimation of Linear Dynamic Panel Data Models (Version 0.9.11)
2020
pdp : Partial Dependence Plots (Version 0.8.2)
2016
pedgene : Gene-Level Variant Association Tests for Pedigree Data (Version 3.9)
2013
pedigree : Pedigree Functions (Version 1.4.2)
2009
pedigreeTools : Versatile Functions for Working with Pedigrees (Version 0.3)
2018
pedigreemm : Pedigree-Based Mixed-Effects Models (Version 0.3-5)
2009
pedtricks : Visualize, Summarize and Simulate Data from Pedigrees (Version 0.4.2)
2024
penAFT : Fit the Regularized Gehan Estimator with Elastic Net and Sparse Group Lasso Penalties (Version 0.3.0)
2022
pencal : Penalized Regression Calibration (PRC) for the Dynamic Prediction of Survival (Version 2.2.2)
2020
pense : Penalized Elastic Net S/MM-Estimator of Regression (Version 2.2.2)
2017
pensynth : Penalized Synthetic Control Estimation (Version 0.5.1)
2024
perARMA : Periodic Time Series Analysis (Version 1.7)
2013
performance : Assessment of Regression Models Performance (Version 0.12.4)
2019
permubiome : A Permutation Based Test for Biomarker Discovery in Microbiome Data (Version 1.3.2)
2016
permuco : Permutation Tests for Regression, (Repeated Measures) ANOVA/ANCOVA and Comparison of Signals (Version 1.1.3)
2018
pez : Phylogenetics for the Environmental Sciences (Version 1.2-4)
2014
phangorn : Phylogenetic Reconstruction and Analysis (Version 2.12.1)
2008
phateR : PHATE - Potential of Heat-Diffusion for Affinity-Based Transition Embedding (Version 1.0.7)
2018
pheble : Classifying High-Dimensional Phenotypes with Ensemble Learning (Version 0.1.0)
2023
phia : Post-Hoc Interaction Analysis (Version 0.3-1)
2012
phm : Phrase Mining (Version 1.1.2)
2020
phyloregion : Biogeographic Regionalization and Macroecology (Version 1.0.8)
2020
phyr : Model Based Phylogenetic Analysis (Version 1.1.0)
2019
piar : Price Index Aggregation (Version 0.8.1)
2022
picasso : Pathwise Calibrated Sparse Shooting Algorithm (Version 1.3.1)
2014
piqp : R Interface to Proximal Interior Point Quadratic Programming Solver (Version 0.2.2)
2023
pkggraph : A Consistent and Intuitive Platform to Explore the Dependencies of Packages on the Comprehensive R Archive Network Like Repositories (Version 0.2.3)
2017
planningML : A Sample Size Calculator for Machine Learning Applications in Healthcare (Version 1.0.1)
2022
plantTracker : Extract Demographic and Competition Data from Fine-Scale Maps (Version 1.1.0)
2023
plasso : Cross-Validated (Post-) Lasso (Version 0.1.2)
2023
pleio : Pleiotropy Test for Multiple Traits on a Genetic Marker (Version 1.9)
2016
plmmr : Penalized Linear Mixed Models for Correlated Data (Version 4.1.0)
2024
pmml : Generate PMML for Various Models (Version 2.5.2)
2007
poismf : Factorization of Sparse Counts Matrices Through Poisson Likelihood (Version 0.4.0-4)
2019
polmineR : Verbs and Nouns for Corpus Analysis (Version 0.8.9)
2016
polyMatrix : Infrastructure for Manipulation Polynomial Matrices (Version 0.9.16)
2020
polycor : Polychoric and Polyserial Correlations (Version 0.8-1)
2004
polyhedralCubature : Multiple Integration over Convex Polyhedra (Version 1.1.0)
2023
polywog : Bootstrapped Basis Regression with Oracle Model Selection (Version 0.4-1)
2012
pomdp : Infrastructure for Partially Observable Markov Decision Processes (POMDP) (Version 1.2.3)
2018
poolfstat : Computing f-Statistics and Building Admixture Graphs Based on Allele Count or Pool-Seq Read Count Data (Version 2.2.0)
2018
porridge : Ridge-Type Penalized Estimation of a Potpourri of Models (Version 0.3.3)
2019
ppmSuite : A Collection of Models that Employ Product Partition Distributions as a Prior on Partitions (Version 0.3.4)
2020
pre : Prediction Rule Ensembles (Version 1.0.7)
2016
predictmeans : Predicted Means for Linear and Semiparametric Models (Version 1.1.0)
2014
primePCA : Projected Refinement for Imputation of Missing Entries in PCA (Version 1.2)
2019
prioriactions : Multi-Action Conservation Planning (Version 0.5.0)
2021
prioritizr : Systematic Conservation Prioritization in R (Version 8.0.4)
2016
prodest : Production Function Estimation (Version 1.0.1)
2017
profoc : Probabilistic Forecast Combination Using CRPS Learning (Version 1.3.3)
2021
provGraphR : Creates Adjacency Matrices for Lineage Searches (Version 1.0.1)
2020
proxyC : Computes Proximity in Large Sparse Matrices (Version 0.4.1)
2018
prozor : Minimal Protein Set Explaining Peptide Spectrum Matches (Version 0.3.1)
2015
psborrow2 : Bayesian Dynamic Borrowing Analysis and Simulation (Version 0.0.3.4)
2024
psborrow : Bayesian Dynamic Borrowing with Propensity Score (Version 0.2.1)
2021
psqn : Partially Separable Quasi-Newton (Version 0.3.2)
2020
pspatreg : Spatial and Spatio-Temporal Semiparametric Regression Models with Spatial Lags (Version 1.1.2)
2022
psychonetrics : Structural Equation Modeling and Confirmatory Network Analysis (Version 0.13)
2019
qrjoint : Joint Estimation in Linear Quantile Regression (Version 2.0-9)
2015
qtkit : Quantitative Text Kit (Version 1.0.0)
2024
qtlpoly : Random-Effect Multiple QTL Mapping in Autopolyploids (Version 0.2.4)
2021
quadrupen : Sparsity by Worst-Case Quadratic Penalties (Version 0.2-12)
2012
quanteda.textmodels : Scaling Models and Classifiers for Textual Data (Version 0.9.9)
2020
quanteda.textplots : Plots for the Quantitative Analysis of Textual Data (Version 0.95)
2020
quanteda.textstats : Textual Statistics for the Quantitative Analysis of Textual Data (Version 0.97.2)
2020
quanteda : Quantitative Analysis of Textual Data (Version 4.1.0)
2015
quantkriging : Quantile Kriging for Stochastic Simulations with Replication (Version 0.1.0)
2020
quantreg : Quantile Regression (Version 5.99)
1999
quid : Bayesian Mixed Models for Qualitative Individual Differences (Version 0.0.1)
2021
r2glmm : Computes R Squared for Mixed (Multilevel) Models (Version 0.1.2)
2016
r2mlm : R-Squared Measures for Multilevel Models (Version 0.3.7)
2020
rARPACK : Solvers for Large Scale Eigenvalue and SVD Problems (Version 0.11-0)
2014
rBMF : Boolean Matrix Factorization (Version 1.1)
2020
rMultiNet : Multi-Layer Networks Analysis (Version 0.1)
2023
rNeighborGWAS : Testing Neighbor Effects in Marker-Based Regressions (Version 1.2.4)
2020
rNeighborQTL : Interval Mapping for Quantitative Trait Loci Underlying Neighbor Effects (Version 1.1.2)
2020
rPanglaoDB : Download and Merge Single-Cell RNA-Seq Data from the PanglaoDB Database (Version 0.2.1)
2021
rSPDE : Rational Approximations of Fractional Stochastic Partial Differential Equations (Version 2.3.3)
2019
rTensor2 : MultiLinear Algebra (Version 2.0.0)
2022
rWishart : Random Wishart Matrix Generation (Version 0.1.2)
2017
ramps : Bayesian Geostatistical Modeling with RAMPS (Version 0.6.18)
2007
randnet : Random Network Model Estimation, Selection and Parameter Tuning (Version 0.7)
2017
randomLCA : Random Effects Latent Class Analysis (Version 1.1-4)
2008
ranger : A Fast Implementation of Random Forests (Version 0.17.0)
2015
raptr : Representative and Adequate Prioritization Toolkit in R (Version 1.0.1)
2016
rare : Linear Model with Tree-Based Lasso Regularization for Rare Features (Version 0.1.1)
2018
rattle : Graphical User Interface for Data Science in R (Version 5.5.1)
2013
rbi.helpers : 'rbi' Helper Functions (Version 0.4.0)
2019
rbmi : Reference Based Multiple Imputation (Version 1.3.0)
2022
rbridge : Restricted Bridge Estimation (Version 1.0.2)
2019
rdomains : Get the Category of Content Hosted by a Domain (Version 0.2.1)
2016
readsparse : Read and Write Sparse Matrices in 'SVMLight' and 'LibSVM' Formats (Version 0.1.5-6)
2021
recipes : Preprocessing and Feature Engineering Steps for Modeling (Version 1.1.0)
2017
recometrics : Evaluation Metrics for Implicit-Feedback Recommender Systems (Version 0.1.6-3)
2021
recommenderlab : Lab for Developing and Testing Recommender Algorithms (Version 1.0.6)
2010
recosystem : Recommender System using Matrix Factorization (Version 0.5.1)
2014
reformulas : Machinery for Processing Random Effect Formulas (Version 0.4.0)
2024
refund : Regression with Functional Data (Version 0.1-37)
2010
registr : Curve Registration for Exponential Family Functional Data (Version 2.1.0)
2020
reglogit : Simulation-Based Regularized Logistic Regression (Version 1.2-7)
2011
regmedint : Regression-Based Causal Mediation Analysis with Interaction and Effect Modification Terms (Version 1.0.1)
2020
remiod : Reference-Based Multiple Imputation for Ordinal/Binary Response (Version 1.0.2)
2022
repolr : Repeated Measures Proportional Odds Logistic Regression (Version 3.4)
2012
retel : Regularized Exponentially Tilted Empirical Likelihood (Version 0.1.0)
2024
reticulate : Interface to 'Python' (Version 1.39.0)
2017
rgraph6 : Representing Graphs as 'graph6', 'digraph6' or 'sparse6' Strings (Version 2.0-4)
2022
rhype : Work with Hypergraphs in R (Version 0.3.0)
2021
riskParityPortfolio : Design of Risk Parity Portfolios (Version 0.2.2)
2018
riskclustr : Functions to Study Etiologic Heterogeneity (Version 0.4.1)
2019
rliger : Linked Inference of Genomic Experimental Relationships (Version 2.1.0)
2021
rmatio : Read and Write 'Matlab' Files (Version 0.19.0)
2014
rmgarch : Multivariate GARCH Models (Version 1.3-9)
2013
rmumps : Wrapper for MUMPS Library (Version 5.2.1-30)
2015
rnndescent : Nearest Neighbor Descent Method for Approximate Nearest Neighbors (Version 0.1.6)
2023
rnnmf : Regularized Non-Negative Matrix Factorization (Version 0.3.0)
2024
robin : ROBustness in Network (Version 1.2.0)
2019
robustbase : Basic Robust Statistics (Version 0.99-4-1)
2006
robustbetareg : Robust Beta Regression (Version 0.3.0)
2022
robustlmm : Robust Linear Mixed Effects Models (Version 3.3-1)
2013
robustreg : Robust Regression Functions (Version 0.1-11)
2012
robustsur : Robust Estimation for Seemingly Unrelated Regression Models (Version 0.0-7)
2021
robustvarComp : Robust Estimation of Variance Component Models (Version 0.1-7)
2014
rodd : Optimal Discriminating Designs (Version 0.2-1)
2014
rope : Model Selection with FDR Control of Selected Variables (Version 1.0)
2017
round : Rounding to Decimal Digits (Version 0.21-0.2)
2020
rpql : Regularized PQL for Joint Selection in GLMMs (Version 0.8.1)
2016
rqPen : Penalized Quantile Regression (Version 4.1.2)
2014
rr2 : R2s for Regression Models (Version 1.1.1)
2018
rrMixture : Reduced-Rank Mixture Models (Version 0.1-2)
2022
rsetse : Strain Elevation Tension Spring Embedding (Version 0.5.0)
2020
rsmatch : Matching Methods for Time-Varying Observational Studies (Version 0.2.1)
2023
rsmatrix : Matrices for Repeat-Sales Price Indexes (Version 0.2.8)
2020
rsparse : Statistical Learning on Sparse Matrices (Version 0.5.2)
2019
rsq : R-Squared and Related Measures (Version 2.7)
2016
rstanarm : Bayesian Applied Regression Modeling via Stan (Version 2.32.1)
2016
rstan : R Interface to Stan (Version 2.32.6)
2015
rsvd : Randomized Singular Value Decomposition (Version 1.0.5)
2015
rviewgraph : Animated Graph Layout Viewer (Version 1.4.2)
2018
rwc : Random Walk Covariance Models (Version 1.11)
2017
rxode2 : Facilities for Simulating from ODE-Based Models (Version 3.0.2)
2022
sNPLS : NPLS Regression with L1 Penalization (Version 1.0.27)
2016
sRDA : Sparse Redundancy Analysis (Version 1.0.0)
2017
sSDR : Tools Developed for Structured Sufficient Dimension Reduction (sSDR) (Version 1.2.0)
2015
saeMSPE : Compute MSPE Estimates for the Fay Herriot Model and Nested Error Regression Model (Version 1.2)
2022
saeRobust : Robust Small Area Estimation (Version 0.5.0)
2016
sageR : Applied Statistics for Economics and Management with R (Version 0.6.1)
2021
samc : Spatial Absorbing Markov Chains (Version 4.0.0)
2019
sanic : Solving Ax = b Nimbly in C++ (Version 0.0.2)
2020
sarsop : Approximate POMDP Planning Software (Version 0.6.15)
2020
sasfunclust : Sparse and Smooth Functional Clustering (Version 1.0.0)
2021
sbfc : Selective Bayesian Forest Classifier (Version 1.0.3)
2016
sbw : Stable Balancing Weights for Causal Inference and Missing Data (Version 1.1.9)
2019
scBSP : A Fast Tool for Single-Cell Spatially Variable Genes Identifications on Large-Scale Data (Version 1.0.0)
2024
scCATCH : Single Cell Cluster-Based Annotation Toolkit for Cellular Heterogeneity (Version 3.2.2)
2022
scCustomize : Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing (Version 2.1.2)
2022
scDHA : Single-Cell Decomposition using Hierarchical Autoencoder (Version 1.2.2)
2021
scGOclust : Measuring Cell Type Similarity with Gene Ontology in Single-Cell RNA-Seq (Version 0.2.1)
2023
scITD : Single-Cell Interpretable Tensor Decomposition (Version 1.0.4)
2021
scRNAstat : A Pipeline to Process Single Cell RNAseq Data (Version 0.1.1)
2021
scTenifoldKnk : In-Silico Knockout Experiments from Single-Cell Gene Regulatory Networks (Version 1.0.1)
2020
scTenifoldNet : Construct and Compare scGRN from Single-Cell Transcriptomic Data (Version 1.3)
2019
scUtils : Utility Functions for Single-Cell RNA Sequencing Data (Version 0.1.0)
2020
sca : Simple Component Analysis (Version 0.9-2)
2003
scalpel : Processes Calcium Imaging Data (Version 1.0.3)
2017
scam : Shape Constrained Additive Models (Version 1.2-17)
2012
sccore : Core Utilities for Single-Cell RNA-Seq (Version 1.0.5)
2020
scpi : Prediction Intervals for Synthetic Control Methods with Multiple Treated Units and Staggered Adoption (Version 2.2.5)
2022
scpoisson : Single Cell Poisson Probability Paradigm (Version 0.0.1)
2022
scs : Splitting Conic Solver (Version 3.2.4)
2016
sctransform : Variance Stabilizing Transformations for Single Cell UMI Data (Version 0.4.1)
2018
sdcTable : Methods for Statistical Disclosure Control in Tabular Data (Version 0.32.6)
2009
sdmTMB : Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB' (Version 0.6.0)
2023
sdpdth : M-Estimator for Threshold Spatial Dynamic Panel Data Model (Version 0.2)
2021
sdpt3r : Semi-Definite Quadratic Linear Programming Solver (Version 0.3)
2017
sdwd : Sparse Distance Weighted Discrimination (Version 1.0.5)
2015
seededlda : Seeded Sequential LDA for Topic Modeling (Version 1.4.1)
2020
semfindr : Influential Cases in Structural Equation Modeling (Version 0.1.8)
2023
semnova : Latent Repeated Measures ANOVA (Version 0.1-6)
2020
sensory : Simultaneous Model-Based Clustering and Imputation via a Progressive Expectation-Maximization Algorithm (Version 1.1)
2014
seqHMM : Mixture Hidden Markov Models for Social Sequence Data and Other Multivariate, Multichannel Categorical Time Series (Version 1.2.6)
2015
serrsBayes : Bayesian Modelling of Raman Spectroscopy (Version 0.5-0)
2018
sf : Simple Features for R (Version 1.0-19)
2016
sfsmisc : Utilities from 'Seminar fuer Statistik' ETH Zurich (Version 1.1-20)
2004
sglasso : Lasso Method for RCON(V,E) Models (Version 1.2.6)
2014
shapr : Prediction Explanation with Dependence-Aware Shapley Values (Version 0.2.2)
2020
sharpPen : Penalized Data Sharpening for Local Polynomial Regression (Version 1.9)
2021
sharpr2 : Estimating Regulatory Scores and Identifying ATAC-STARR Data (Version 1.1.1.0)
2017
signnet : Methods to Analyse Signed Networks (Version 1.0.4)
2020
silp : Conditional Process Analysis (CPA) via Structural Equation Modeling (SEM) Approach (Version 1.0.0)
2024
simExam : Generate Simulated Data for IRT-Enabled Exams (Version 1.0.0)
2019
simcausal : Simulating Longitudinal Data with Causal Inference Applications (Version 0.5.7)
2015
simdata : Generate Simulated Datasets (Version 0.4.0)
2024
simer : Data Simulation for Life Science and Breeding (Version 0.9.0.5)
2022
simplifyNet : Network Sparsification (Version 0.0.1)
2022
simtrial : Clinical Trial Simulation (Version 0.4.1)
2023
simstudy : Simulation of Study Data (Version 0.8.1)
2016
singleCellHaystack : A Universal Differential Expression Prediction Tool for Single-Cell and Spatial Genomics Data (Version 1.0.2)
2020
sirt : Supplementary Item Response Theory Models (Version 4.1-15)
2013
sirus : Stable and Interpretable RUle Set (Version 0.3.3)
2019
skedastic : Handling Heteroskedasticity in the Linear Regression Model (Version 2.0.2)
2020
sklarsomega : Measuring Agreement Using Sklar's Omega Coefficient (Version 3.0-2)
2018
skmeans : Spherical k-Means Clustering (Version 0.2-17)
2009
slam : Sparse Lightweight Arrays and Matrices (Version 0.1-54)
2009
slanter : Slanted Matrices and Ordered Clustering (Version 0.2-0)
2020
slimrec : Sparse Linear Method to Predict Ratings and Top-N Recommendations (Version 0.1.0)
2017
smallstuff : Dr. Small's Functions (Version 1.0.3)
2022
smam : Statistical Modeling of Animal Movements (Version 0.7.2)
2013
smile : Spatial Misalignment: Interpolation, Linkage, and Estimation (Version 1.0.5)
2022
smoothedLasso : A Framework to Smooth L1 Penalized Regression Operators using Nesterov Smoothing (Version 1.6)
2020
smurf : Sparse Multi-Type Regularized Feature Modeling (Version 1.1.5)
2018
snpReady : Preparing Genotypic Datasets in Order to Run Genomic Analysis (Version 0.9.6)
2017
soc.ca : Specific Correspondence Analysis for the Social Sciences (Version 0.8.0)
2014
softImpute : Matrix Completion via Iterative Soft-Thresholded SVD (Version 1.4-1)
2013
sommer : Solving Mixed Model Equations in R (Version 4.3.6)
2016
soptdmaeA : Sequential Optimal Designs for Two-Colour cDNA Microarray Experiments (Version 1.0.0)
2017
spANOVA : Analysis of Field Trials with Geostatistics & Spatial AR Models (Version 0.99.4)
2019
spBayes : Univariate and Multivariate Spatial-Temporal Modeling (Version 0.4-8)
2006
spGARCH : Spatial ARCH and GARCH Models (spGARCH) (Version 0.2.2)
2018
spaMM : Mixed-Effect Models, with or without Spatial Random Effects (Version 4.5.0)
2013
spam : SPArse Matrix (Version 2.11-0)
2007
sparseCov : Sparse Covariance Estimation Based on Thresholding (Version 0.0.1)
2024
sparseDFM : Estimate Dynamic Factor Models with Sparse Loadings (Version 1.0)
2023
sparseFLMM : Functional Linear Mixed Models for Irregularly or Sparsely Sampled Data (Version 0.4.1)
2017
sparseHessianFD : Numerical Estimation of Sparse Hessians (Version 0.3.3.7)
2012
sparseLRMatrix : Represent and Use Sparse + Low Rank Matrices (Version 0.1.0)
2021
sparseMVN : Multivariate Normal Functions for Sparse Covariance and Precision Matrices (Version 0.2.2)
2013
sparsegl : Sparse Group Lasso (Version 1.1.1)
2022
sparseinv : Computation of the Sparse Inverse Subset (Version 0.1.3)
2018
sparsenet : Fit Sparse Linear Regression Models via Nonconvex Optimization (Version 1.6)
2012
sparsestep : SparseStep Regression (Version 1.0.1)
2017
sparsesvd : Sparse Truncated Singular Value Decomposition (from 'SVDLIBC') (Version 0.2-2)
2016
sparsevar : Sparse VAR/VECM Models Estimation (Version 0.1.0)
2016
sparsevctrs : Sparse Vectors for Use in Data Frames (Version 0.1.0)
2024
sparsio : I/O Operations with Sparse Matrices (Version 1.0.1)
2017
spatgraphs : Graph Edge Computations for Spatial Point Patterns (Version 3.4)
2007
spatialEco : Spatial Analysis and Modelling Utilities (Version 2.0-2)
2015
spatialprobit : Spatial Probit Models (Version 1.0.4)
2012
spatialreg : Spatial Regression Analysis (Version 1.3-5)
2019
spatstat.Knet : Extension to 'spatstat' for Large Datasets on a Linear Network (Version 3.1-2)
2019
spatstat.data : Datasets for 'spatstat' Family (Version 3.1-2)
2017
spatstat.explore : Exploratory Data Analysis for the 'spatstat' Family (Version 3.3-3)
2022
spatstat.linnet : Linear Networks Functionality of the 'spatstat' Family (Version 3.2-2)
2021
spatstat.model : Parametric Statistical Modelling and Inference for the 'spatstat' Family (Version 3.3-2)
2022
spatstat.sparse : Sparse Three-Dimensional Arrays and Linear Algebra Utilities (Version 3.1-0)
2020
spatsurv : Bayesian Spatial Survival Analysis with Parametric Proportional Hazards Models (Version 2.0-1)
2014
spdep : Spatial Dependence: Weighting Schemes, Statistics (Version 1.3-6)
2002
speakeasyR : Fast and Robust Multi-Scale Graph Clustering (Version 0.1.4)
2024
spectralGraphTopology : Learning Graphs from Data via Spectral Constraints (Version 0.2.3)
2019
speedglm : Fitting Linear and Generalized Linear Models to Large Data Sets (Version 0.3-5)
2012
speedyBBT : Efficient Bayesian Inference for the Bradley–Terry Model (Version 1.0)
2024
sphet : Estimation of Spatial Autoregressive Models with and without Heteroskedastic Innovations (Version 2.0)
2010
spldv : Spatial Models for Limited Dependent Variables (Version 0.1.3)
2022
splm : Econometric Models for Spatial Panel Data (Version 1.6-5)
2012
spmodel : Spatial Statistical Modeling and Prediction (Version 0.9.0)
2022
spmoran : Fast Spatial and Spatio-Temporal Regression using Moran Eigenvectors (Version 0.3.1)
2017
spreadr : Simulating Spreading Activation in a Network (Version 0.2.0)
2018
spsur : Spatial Seemingly Unrelated Regression Models (Version 1.0.2.5)
2019
squeezy : Group-Adaptive Elastic Net Penalised Generalised Linear Models (Version 1.1-1)
2021
srvyr : 'dplyr'-Like Syntax for Summary Statistics of Survey Data (Version 1.3.0)
2016
ssMRCD : Spatially Smoothed MRCD Estimator (Version 1.1.0)
2023
ssMutPA : Single-Sample Mutation-Based Pathway Analysis (Version 0.1.2)
2024
ssfa : Spatial Stochastic Frontier Analysis (Version 1.2.2)
2015
stR : Seasonal Trend Decomposition Using Regression (Version 0.7)
2016
stabledist : Stable Distribution Functions (Version 0.7-2)
2012
stabm : Stability Measures for Feature Selection (Version 1.2.2)
2019
stan4bart : Bayesian Additive Regression Trees with Stan-Sampled Parametric Extensions (Version 0.0-10)
2021
starm : Spatio-Temporal Autologistic Regression Model (Version 0.1.0)
2020
starnet : Stacked Elastic Net (Version 0.0.7)
2020
statcomp : Statistical Complexity and Information Measures for Time Series Analysis (Version 0.1.0)
2016
statgenHTP : High Throughput Phenotyping (HTP) Data Analysis (Version 1.0.7)
2021
statgenIBD : Calculation of IBD Probabilities (Version 1.0.7)
2021
statgenMPP : QTL Mapping for Multi Parent Populations (Version 1.0.3)
2022
statnet.common : Common R Scripts and Utilities Used by the Statnet Project Software (Version 4.10.0)
2013
stcos : Space-Time Change of Support (Version 0.3.1)
2019
stelfi : Hawkes and Log-Gaussian Cox Point Processes Using Template Model Builder (Version 1.0.1)
2022
stfit : Spatio-Temporal Functional Imputation Tool (Version 0.99.9)
2020
stm : Estimation of the Structural Topic Model (Version 1.3.7)
2014
stocc : Fit a Spatial Occupancy Model via Gibbs Sampling (Version 1.31)
2012
strand : A Framework for Investment Strategy Simulation (Version 0.2.0)
2020
sts : Estimation of the Structural Topic and Sentiment-Discourse Model for Text Analysis (Version 1.1)
2024
stylest2 : Estimating Speakers of Texts (Version 0.1)
2024
success : Survival Control Charts Estimation Software (Version 1.1.0)
2022
sumFREGAT : Fast Region-Based Association Tests on Summary Statistics (Version 1.2.5)
2018
superbiclust : Generating Robust Biclusters from a Bicluster Set (Ensemble Biclustering) (Version 1.2)
2013
surbayes : Bayesian Analysis of Seemingly Unrelated Regression Models (Version 0.1.2)
2020
sureLDA : A Novel Multi-Disease Automated Phenotyping Method for the EHR (Version 0.1.0-1)
2020
surrosurv : Evaluation of Failure Time Surrogate Endpoints in Individual Patient Data Meta-Analyses (Version 1.1.26)
2016
surveillance : Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena (Version 1.24.1)
2005
survey : Analysis of Complex Survey Samples (Version 4.4-2)
2003
surveyvoi : Survey Value of Information (Version 1.0.6)
2021
survival : Survival Analysis (Version 3.7-0)
2001
survivalsvm : Survival Support Vector Analysis (Version 0.0.5)
2017
susieR : Sum of Single Effects Linear Regression (Version 0.12.35)
2021
svrep : Tools for Creating, Updating, and Analyzing Survey Replicate Weights (Version 0.6.4)
2022
svs : Tools for Semantic Vector Spaces (Version 3.1.1)
2015
svydiags : Regression Model Diagnostics for Survey Data (Version 0.7)
2018
svylme : Linear Mixed Models for Complex Survey Data (Version 1.5-1)
2024
symphony : Efficient and Precise Single-Cell Reference Atlas Mapping (Version 0.1.1)
2021
synlik : Synthetic Likelihood Methods for Intractable Likelihoods (Version 0.1.6)
2014
systemfit : Estimating Systems of Simultaneous Equations (Version 1.1-30)
2002
syt : Young Tableaux (Version 0.5.0)
2018
tableone : Create 'Table 1' to Describe Baseline Characteristics with or without Propensity Score Weights (Version 0.13.2)
2014
tabnet : Fit 'TabNet' Models for Classification and Regression (Version 0.6.0)
2021
tcl : Testing in Conditional Likelihood Context (Version 0.2.1)
2019
tea : Threshold Estimation Approaches (Version 1.1)
2017
templateICAr : Estimate Brain Networks and Connectivity with ICA and Empirical Priors (Version 0.8.8)
2022
tensorTS : Factor and Autoregressive Models for Tensor Time Series (Version 1.0.2)
2021
tern.mmrm : Tables and Graphs for Mixed Models for Repeated Measures (MMRM) (Version 0.3.2)
2023
text2map : R Tools for Text Matrices, Embeddings, and Networks (Version 0.2.0)
2021
text2vec : Modern Text Mining Framework for R (Version 0.6.4)
2016
textTinyR : Text Processing for Small or Big Data Files (Version 1.1.8)
2017
textir : Inverse Regression for Text Analysis (Version 2.0-5)
2011
textmineR : Functions for Text Mining and Topic Modeling (Version 3.0.5)
2015
textplot : Text Plots (Version 0.2.2)
2020
textpress : A Lightweight and Versatile NLP Toolkit (Version 1.0.0)
2024
textrecipes : Extra 'Recipes' for Text Processing (Version 1.0.6)
2018
tglkmeans : Efficient Implementation of K-Means++ Algorithm (Version 0.5.5)
2022
tidySEM : Tidy Structural Equation Modeling (Version 0.2.7)
2020
tidylda : Latent Dirichlet Allocation Using 'tidyverse' Conventions (Version 0.0.5)
2021
tidyseurat : Brings Seurat to the Tidyverse (Version 0.8.0)
2020
tidytext : Text Mining using 'dplyr', 'ggplot2', and Other Tidy Tools (Version 0.4.2)
2019
tiledb : Modern Database Engine for Complex Data Based on Multi-Dimensional Arrays (Version 0.30.2)
2020
tmvtnorm : Truncated Multivariate Normal and Student t Distribution (Version 1.6)
2009
topicmodels.etm : Topic Modelling in Embedding Spaces (Version 0.1.0)
2021
tram : Transformation Models (Version 1.1-2)
2018
tramME : Transformation Models with Mixed Effects (Version 1.0.6)
2020
tramnet : Penalized Transformation Models (Version 0.0-8)
2020
transforEmotion : Sentiment Analysis for Text, Image and Video using Transformer Models (Version 0.1.5)
2022
treeDA : Tree-Based Discriminant Analysis (Version 0.0.5)
2017
treestats : Phylogenetic Tree Statistics (Version 1.70.5)
2024
triplesmatch : Match Triples Consisting of Two Controls and a Treated Unit or Vice Versa (Version 1.1.0)
2023
triversity : Diversity Measures on Tripartite Graphs (Version 1.0)
2017
trustOptim : Trust Region Optimization for Nonlinear Functions with Sparse Hessians (Version 0.8.7.3)
2012
tsDyn : Nonlinear Time Series Models with Regime Switching (Version 11.0.5.2)
2006
tsapp : Time Series, Analysis and Application (Version 1.0.4)
2020
tscopula : Time Series Copula Models (Version 0.3.9)
2021
tscount : Analysis of Count Time Series (Version 1.4.3)
2015
tseriesTARMA : Analysis of Nonlinear Time Series Through Threshold Autoregressive Moving Average Models (TARMA) Models (Version 0.5-1)
2023
tsrobprep : Robust Preprocessing of Time Series Data (Version 0.3.2)
2020
ttservice : A Service for Tidy Transcriptomics Software Suite (Version 0.4.1)
2021
tukeytrend : Tukeys Trend Test via Multiple Marginal Models (Version 0.7)
2017
tvR : Total Variation Regularization (Version 0.3.2)
2017
tvReg : Time-Varying Coefficient for Single and Multi-Equation Regressions (Version 0.5.9)
2017
ubms : Bayesian Models for Data from Unmarked Animals using 'Stan' (Version 1.2.7)
2021
udpipe : Tokenization, Parts of Speech Tagging, Lemmatization and Dependency Parsing with the 'UDPipe' 'NLP' Toolkit (Version 0.8.11)
2017
ui : Uncertainty Intervals and Sensitivity Analysis for Missing Data (Version 0.1.1)
2019
umap : Uniform Manifold Approximation and Projection (Version 0.2.10.0)
2018
umx : Structural Equation Modeling and Twin Modeling in R (Version 4.20.0)
2015
ungroup : Penalized Composite Link Model for Efficient Estimation of Smooth Distributions from Coarsely Binned Data (Version 1.4.4)
2018
unmarked : Models for Data from Unmarked Animals (Version 1.4.3)
2010
useful : A Collection of Handy, Useful Functions (Version 1.2.6.1)
2011
uwot : The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality Reduction (Version 0.2.2)
2019
vagam : Variational Approximations for Generalized Additive Models (Version 1.1)
2019
varTestnlme : Variance Components Testing for Linear and Nonlinear Mixed Effects Models (Version 1.3.5)
2020
varbvs : Large-Scale Bayesian Variable Selection Using Variational Methods (Version 2.6-10)
2012
varjmcm : Estimations for the Covariance of Estimated Parameters in Joint Mean-Covariance Models (Version 0.1.1)
2018
vglmer : Variational Inference for Hierarchical Generalized Linear Models (Version 1.0.6)
2022
visa : Vegetation Imaging Spectroscopy Analyzer (Version 0.1.0)
2021
visaOTR : Valid Improved Sparsity A-Learning for Optimal Treatment Decision (Version 0.1.0)
2022
visreg : Visualization of Regression Models (Version 2.7.0)
2012
voi : Expected Value of Information (Version 1.0.3)
2023
votesys : Voting Systems, Instant-Runoff Voting, Borda Method, Various Condorcet Methods (Version 0.1.1)
2018
vrnmf : Volume-Regularized Structured Matrix Factorization (Version 1.0.2)
2021
vsmi : Variable Selection for Multiple Imputed Data (Version 0.1.0)
2024
vsp : Vintage Sparse PCA for Semi-Parametric Factor Analysis (Version 0.1.2)
2022
wactor : Word Factor Vectors (Version 0.0.1)
2019
waydown : Computation of Approximate Potentials for Weakly Non-Gradient Fields (Version 1.1.0)
2021
waywiser : Ergonomic Methods for Assessing Spatial Models (Version 0.6.0)
2022
wdnet : Weighted and Directed Networks (Version 1.2.3)
2022
wfe : Weighted Linear Fixed Effects Regression Models for Causal Inference (Version 1.9.1)
2011
widyr : Widen, Process, then Re-Tidy Data (Version 0.1.5)
2017
winputall : Variable Input Allocation Among Crops (Version 1.0.1)
2024
wordmap : Feature Extraction and Document Classification with Noisy Labels (Version 0.9.1)
2024
wordspace : Distributional Semantic Models in R (Version 0.2-8)
2016
xLLiM : High Dimensional Locally-Linear Mapping (Version 2.3)
2016
xgboost : Extreme Gradient Boosting (Version 1.7.8.1)
2014
xrf : eXtreme RuleFit (Version 0.2.2)
2019
xrnet : Hierarchical Regularized Regression (Version 1.0.0)
2020
xxdi : Calculate Expertise Indices (Version 1.2.3)
2024
ycevo : Nonparametric Estimation of the Yield Curve Evolution (Version 0.2.1)
2022
zenplots : Zigzag Expanded Navigation Plots (Version 1.0.6)
2016
Showing 1-1685 of 1685
RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN).
Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.
Verify/Update your account
