Referenced by ⇅
Year
abcADM : Fit Accumulated Damage Models and Estimate Reliability using ABC (Version 1.0)
2019
acrt : Autocorrelation Robust Testing (Version 1.0.1)
2016
AdaptiveSparsity : Adaptive Sparsity Models (Version 1.6)
2013
ADMMnet : Regularized Model with Selecting the Number of Non-Zeros (Version 0.1.1)
2015
AlphaHull3D : Alpha Hull Computation (Version 2.0.0)
2022
APAtree : Computation of the "Area Potentially Available" (APA) to Trees (Version 1.0.1)
2021
APML0 : Augmented and Penalized Minimization Method L0 (Version 0.10)
2017
BacArena : Modeling Framework for Cellular Communities in their
Environments (Version 1.8.2)
2015
bartBMA : Bayesian Additive Regression Trees using Bayesian Model
Averaging (Version 1.0)
2020
BartMixVs : Variable Selection Using Bayesian Additive Regression Trees (Version 1.0.0)
2022
Barycenter : Regularized Wasserstein Distances and Barycenters (Version 1.3.1)
2016
bayesbr : Beta Regression on a Bayesian Model (Version 0.0.1.0)
2020
BayesMRA : Bayesian Multi-Resolution Gaussian Process Approximations (Version 1.0.0)
2020
BayesSPsurv : Bayesian Spatial Split Population Survival Model (Version 0.1.4)
2020
bcp : Bayesian Analysis of Change Point Problems (Version 4.0.3)
2006
Biocomb : Feature Selection and Classification with the Embedded
Validation Procedures for Biomedical Data Analysis (Version 0.4)
2015
BiProbitPartial : Bivariate Probit with Partial Observability (Version 1.0.3)
2019
bmotif : Motif Analyses of Bipartite Networks (Version 2.0.2)
2018
bmrm : Bundle Methods for Regularized Risk Minimization Package (Version 4.1)
2013
BMTME : Bayesian Multi-Trait Multi-Environment for Genomic Selection
Analysis (Version 1.0.19)
2019
Boov : Boolean Operations on Volumes (Version 1.0.0)
2022
cattonum : Encode Categorical Features (Version 0.0.5)
2018
CENFA : Climate and Ecological Niche Factor Analysis (Version 1.1.1)
2018
changepointsHD : Change-Point Estimation for Expensive and High-Dimensional
Models (Version 0.3.3)
2017
chickn : "Compressive" Hierarchical Kernel Clustering Toolbox (Version 1.2.3)
2020
climdex.pcic : PCIC Implementation of Climdex Routines (Version 1.1-11)
2011
ClustMMDD : Variable Selection in Clustering by Mixture Models for Discrete
Data (Version 1.0.4)
2015
Compack : Regression with Compositional Covariates (Version 0.1.0)
2020
cort : Some Empiric and Nonparametric Copula Models (Version 0.3.2)
2020
datastructures : Implementation of Core Data Structures (Version 0.2.9)
2017
deepboost : Deep Boosting Ensemble Modeling (Version 0.1.6)
2016
delaunay : 2d, 2.5d, and 3d Delaunay Tessellations (Version 2.0.0)
2022
dfpk : Bayesian Dose-Finding Designs using Pharmacokinetics (PK) for
Phase I Clinical Trials (Version 3.5.1)
2016
diffusr : Network Diffusion Algorithms (Version 0.1.4)
2016
discretecdAlgorithm : Coordinate-Descent Algorithm for Learning Sparse Discrete
Bayesian Networks (Version 0.0.7)
2016
diseq : Estimation Methods for Markets in Equilibrium and Disequilibrium (Version 0.4.6)
2020
diveRsity : A Comprehensive, General Purpose Population Genetics Analysis
Package (Version 1.9.90)
2012
dynamichazard : Dynamic Hazard Models using State Space Models (Version 1.0.2)
2016
DynComm : Dynamic Network Communities Detection and Generation (Version 2020.1.6)
2020
ECctmc : Simulation from Endpoint-Conditioned Continuous Time Markov
Chains (Version 0.2.5)
2016
EMVS : The Expectation-Maximization Approach to Bayesian Variable
Selection (Version 1.2.1)
2018
ergmclust : ERGM-Based Network Clustering (Version 1.0.0)
2021
EstHer : Estimation of Heritability in High Dimensional Sparse Linear
Mixed Models using Variable Selection (Version 1.0)
2015
fastlogranktest : A Fast Way to Calculate the p-Value of One or Multiple
Log-Rank-Tests (Version 0.2.1)
2019
FDRSeg : FDR-Control in Multiscale Change-Point Segmentation (Version 1.0-3)
2017
ffstream : Forgetting Factor Methods for Change Detection in Streaming Data (Version 0.1.7.2)
2016
fm.index : Fast String Searching (Version 0.1.1)
2022
futureheatwaves : Find, Characterize, and Explore Extreme Events in Climate
Projections (Version 1.0.3)
2016
GenomicMating : Efficient Breeding by Genomic Mating (Version 2.0)
2017
gfpop : Graph-Constrained Functional Pruning Optimal Partitioning (Version 1.1.1)
2020
glmdisc : Discretization and Grouping for Logistic Regression (Version 0.6)
2019
gren : Adaptive Group-Regularized Logistic Elastic Net Regression (Version 0.0.1)
2018
gwfa : Geographically Weighted Fractal Analysis (Version 0.0.4)
2016
HARModel : Heterogeneous Autoregressive Models (Version 1.0)
2018
hdtg : Generate Samples from Multivariate Truncated Normal Distributions (Version 0.2.3)
2022
hergm : Hierarchical Exponential-Family Random Graph Models (Version 4.1-10)
2010
HHG : Heller-Heller-Gorfine Tests of Independence and Equality of
Distributions (Version 2.3.7)
2013
hit : Hierarchical Inference Testing (Version 0.4.0)
2015
hmlasso : Lasso with High Missing Rate (Version 0.0.1)
2019
htdp : Horizontal Time Dependent Positioning (Version 0.1.4)
2016
iBATCGH : Integrative Bayesian Analysis of Transcriptomic and CGH Data (Version 1.3.1)
2014
iilasso : Independently Interpretable Lasso (Version 0.0.2)
2018
independence : Fast Rank-Based Independence Testing (Version 1.0.1)
2020
iptools : Manipulate, Validate and Resolve "IP" Addresses (Version 0.7.2)
2015
kernelPSI : Post-Selection Inference for Nonlinear Variable Selection (Version 1.1.1)
2019
L1mstate : L1-Regularized Multi-State Models (Version 1.0.1)
2020
lazygreedy : Applying the Lazy-Greedy Spanning Algorithm (Version 1.0)
2020
lclGWAS : Efficient Estimation of Discrete-Time Multivariate Frailty Model
Using Exact Likelihood Function for Grouped Survival Data (Version 1.0.3)
2016
ldat : Large Data Sets (Version 0.3.3)
2017
LDheatmap : Graphical Display of Pairwise Linkage Disequilibria Between SNPs (Version 1.0-6)
2005
libstableR : Fast and Accurate Evaluation, Random Number Generation and
Parameter Estimation of Skew Stable Distributions (Version 1.0.2)
2017
LinearDetect : Change Point Detection in High-Dimensional Linear Regression
Models (Version 0.1.5)
2021
linearQ : Linear Algorithm for Simulating Quantiles in Multiscale
Change-Point Segmentation Problem (Version 2.0)
2018
lvec : Out of Memory Vectors (Version 0.2.5)
2017
MapeBay : Multivariate Analysis of Variance Panel, PERMANOVA and Bayesian (Version 0.1.0)
2021
match2C : Match One Sample using Two Criteria (Version 1.2.4)
2020
MeshesTools : Some Tools for 3D Meshes (Version 1.0.0)
2022
MetaheuristicFPA : An Implementation of Flower Pollination Algorithm in R (Version 1.0)
2016
microsamplingDesign : Finding Optimal Microsampling Designs for Non-Compartmental
Pharmacokinetic Analysis (Version 1.0.8)
2018
MIDASwrappeR : Microcluster-Based Detector of Anomalies in Edge Streams (Version 0.5.1)
2020
minimaxdesign : Minimax and Minimax Projection Designs (Version 0.1.5)
2016
MinkowskiSum : Minkowski Addition Between 3D Meshes (Version 1.0.0)
2022
mixedClust : Co-Clustering of Mixed Type Data (Version 1.0.2)
2019
molic : Multivariate Outlier Detection in Contingency Tables (Version 2.0.3)
2020
MrSGUIDE : Multiple Responses Subgroup Identification using "GUIDE"
Algorithm (Version 0.1.2)
2020
mssm : Multivariate State Space Models (Version 0.1.6)
2019
mudens : Density Estimate (Version 1.3.2)
2018
mumm : Multiplicative Mixed Models using the Template Model Builder (Version 0.2.1)
2018
netchain : Inferring Causal Effects on Collective Outcomes under
Interference (Version 0.2.0)
2019
nVennR : Create n-Dimensional, Quasi-Proportional Venn Diagrams (Version 0.2.3)
2018
odeintr : C++ ODE Solvers Compiled on-Demand (Version 1.7.1)
2015
odpc : One-Sided Dynamic Principal Components (Version 2.0.5)
2017
opentimsr : An Open-Source Loader for Bruker"s timsTOF Data Files (Version 1.0.13)
2020
ordinalClust : Ordinal Data Clustering, Co-Clustering and Classification (Version 1.3.5)
2017
outerbase : Outer Product Regression (Version 0.1.0)
2022
PAMA : Rank Aggregation with Partition Mallows Model (Version 1.2.0)
2020
pcoxtime : Penalized Cox Proportional Hazard Model for Time-Dependent
Covariates (Version 1.0.4)
2021
perccal : Implementing Double Bootstrap Linear Regression Confidence
Intervals Using the "perc-cal" Method (Version 1.0)
2016
perfectphyloR : Reconstruct Perfect Phylogenies from DNA Sequence Data (Version 0.2.1)
2019
pirate : Generated Effect Modifier (Version 1.0.0)
2016
polyfreqs : Bayesian Population Genomics in Autopolyploids (Version 1.0.2)
2015
PolygonSoup : Mesh from Polygon Soup (Version 1.0.1)
2022
ProbReco : Score Optimal Probabilistic Forecast Reconciliation (Version 0.1.2)
2020
ProFound : Photometry Tools (Version 1.14.1)
2017
propr : Calculating Proportionality Between Vectors of Compositional
Data (Version 4.2.6)
2016
psrwe : PS-Integrated Methods for Incorporating Real-World Evidence in Clinical Studies (Version 3.2)
2020
psychtm : Text Mining Methods for Psychological Research (Version 2021.1.0)
2021
ptf : Probit Tensor Factorization (Version 0.0.1)
2021
ptsuite : Tail Index Estimation for Power Law Distributions (Version 1.0.0)
2019
PWD : Time Series Regression Using the Power Weighted Densities (PWD)
Approach (Version 1.0)
2016
R.SamBada : Processing Pipeline for "SamBada" from Pre- To Post-Processing (Version 0.1.3)
2019
rankUncertainty : Methods for Working with Uncertainty in Rankings (Version 1.0.2.0)
2021
ranlip : (Version )
0
rbart : Bayesian Trees for Conditional Mean and Variance (Version 1.0)
2019
RcppDL : Deep Learning Methods via Rcpp (Version 0.0.5)
2014
rCRM : Regularized Continual Reassessment Method (Version 0.1.1)
2018
rDppDiversity : Subset Searching Algorithm Using DPP Greedy MAP (Version 0.0.2)
2021
reclin : Record Linkage Toolkit (Version 0.1.2)
2018
recom : "Recom" REmoves COMments of Rscript File for you (Version 1.0)
2021
ReorderCluster : Reordering the Dendrogram According to the Class Labels (Version 2.0)
2014
rforensicbatwing : BATWING for Calculating Forensic Trace-Suspect Match
Probabilities (Version 1.3.1)
2013
rgeolocate : IP Address Geolocation (Version 1.4.2)
2015
riot : R Inputs/Outputs for Tractography (Version 1.1.0)
2022
Rlda : Bayesian LDA for Mixed-Membership Clustering Analysis (Version 0.2.6)
2017
rmdcev : Kuhn-Tucker and Multiple Discrete-Continuous Extreme Value
Models (Version 1.2.5)
2019
robets : Forecasting Time Series with Robust Exponential Smoothing (Version 1.4)
2016
robFitConGraph : Graph-Constrained Robust Covariance Estimation (Version 0.4.1)
2019
rollRegres : Fast Rolling and Expanding Window Linear Regression (Version 0.1.4)
2018
rootWishart : Distribution of Largest Root for Single and Double Wishart
Settings (Version 0.4.1)
2016
RstoxData : Tools to Read and Manipulate Fisheries Data (Version 1.2.1)
2020
rTLS : Tools to Process Point Clouds Derived from Terrestrial Laser Scanning (Version 0.2.6.1)
2021
Rvoterdistance : Calculates the Distance Between Voter and Multiple Polling
Locations (Version 1.1)
2017
SAMM : Some Algorithms for Mixed Models (Version 1.1.1)
2016
scPOP : Metrics for Benchmarking scRNA-Seq Batch Correction (Version 0.1.0)
2021
seagull : Lasso, Group Lasso, and Sparse-Group Lasso for Mixed Models (Version 1.1.0)
2020
SelvarMix : Regularization for Variable Selection in Model-Based Clustering
and Discriminant Analysis (Version 1.2.1)
2014
sequences : Generic and Biological Sequences (Version 0.5.9)
2013
SkeweDF : Optimization of Skewed Distributions with Birth-Death Processes (Version 0.1.0)
2021
smog : Structural Modeling by using Overlapped Group Penalty (Version 2.1.0)
2019
SpaCCr : Spatial Convex Clustering (Version 0.1.0)
2016
spamtree : Spatial Multivariate Trees (Version 0.2.2)
2021
SparseFactorAnalysis : Scaling Count and Binary Data with Sparse Factor Analysis (Version 1.0)
2015
spatialfusion : Multivariate Analysis of Spatial Data Using a Unifying Spatial Fusion Framework (Version 0.7-2)
2019
SPQR : Semi-Parametric Quantile Regression (Version 0.1.0)
2022
spruce : Spatial Random Effects Clustering of Single Cell Data (Version 0.99.1)
2022
swmmr : R Interface for US EPA"s SWMM (Version 0.9.1)
2017
telemac : R Interface to the TELEMAC Model Suite (Version 0.1.1)
2021
treeducken : Nested Phylogenetic Tree Simulator (Version 1.1.0)
2020
treemisc : Data Sets and Functions to Accompany "Tree-Based Methods for
Statistical Learning in R" (Version 0.0.1)
2022
treeplyr : "dplyr" Functionality for Matched Tree and Data Objects (Version 0.1.10)
2016
vennLasso : Variable Selection for Heterogeneous Populations (Version 0.1.6)
2017
vlad : Variable Life Adjusted Display and Other Risk-Adjusted Quality
Control Charts (Version 0.2.2)
2018
wellknown : Convert Between "WKT" and "GeoJSON" (Version 0.7.4)
2015
wingui : Advanced Windows Functions (Version 0.2)
2015
xtensor : Headers for the "xtensor" Library (Version 0.14.1-0)
2017
yaps : Track Estimation using YAPS (Yet Another Positioning Solver) (Version 1.2.5)
2021
ziphsmm : Zero-Inflated Poisson Hidden (Semi-)Markov Models (Version 2.0.6)
2017
cgalMeshes : R6 Based Utilities for 3D Meshes using "CGAL" (Version 1.0.0)
2022
lazyNumbers : Exact Floating-Point Arithmetic (Version 1.2.1)
2022
glmmrMCML : Markov Chain Monte Carlo Maximum Likelihood for Generalised
Linear Mixed Models (Version 0.2.2)
2023
dsfa : Distributional Stochastic Frontier Analysis (Version 2.0.2)
2022
morf : Modified Ordered Random Forest (Version 1.0.0)
2023
cgalPolygons : (Version )
0
concordancer : An "Rcpp" Implementation of Lin"s Concordance Correlation
Coefficient (CCC) (Version 1.0.2)
2023
Rpcop : Principal Curves of Oriented Points (Version 1.1)
2022
defm : Estimation and Simulation of Multi-Binary Response Models (Version 0.2.1.0)
2023
concrete : Continuous-Time Competing Risks Estimation using Targeted
Minimum Loss-Based Estimation (TMLE) (Version 1.0.5)
2023
NRAHDLTP : Location Tests for High-Dimensional Problems Including
Normal-Reference Approach (Version 0.1.2)
2023
gdalBindings : GDAL Classes Wrapper for Reading and Writing Raster Blocks (Version 0.1.17)
2023
gbm3 : Generalized Boosted Regression Models (Version 3.0)
2024
vyos : Interface for Multiple Data Providers 'EDDS' and 'FRED' (Version 1.0.2)
2024
GSNA : Gene Set Networking Analysis Package (Version 0.1.4.2)
2024
WSGeometry : Geometric Tools Based on Balanced/Unbalanced Optimal Transport (Version 1.2.1)
2021
fwildclusterboot : Fast Wild Cluster Bootstrap Inference for Linear Models (Version 0.13.0)
2021
liger : Lightweight Iterative Geneset Enrichment (Version 2.0.1)
2018
CARlasso : Conditional Autoregressive LASSO (Version 0.1.2)
2021
autocart : Autocorrelation Regression Trees (Version 1.4.5)
2021
fractalRegression : Performs Fractal Analysis and Fractal Regression (Version 1.2)
2021
lpme : Nonparametric Estimation of Measurement Error Models (Version 1.1.3)
2014
seqest : Sequential Method for Classification and Generalized Estimating Equations Problem (Version 1.0.1)
2020
pedmod : Pedigree Models (Version 0.2.4)
2021
supc : The Self-Updating Process Clustering Algorithms (Version 0.2.6.2)
2017
maxnodf : Approximate Maximisation of Nestedness in Bipartite Graphs (Version 1.0.0)
2020
slopeOP : Change-in-Slope OP Algorithm with a Finite Number of States (Version 1.0.1)
2020
gfilmm : Generalized Fiducial Inference for Normal Linear Mixed Models (Version 2.0.5)
2020
gfilogisreg : Generalized Fiducial Inference for Binary Logistic Regression Models (Version 1.0.3)
2021
netcox : Structural Learning in Cox Models with Time-Dependent Covariates (Version 1.0.1)
2023
StrucDiv : Spatial Structural Diversity Quantification in Raster Data (Version 0.2.1)
2022
rxode2et : Event Table Functions for 'rxode2' (Version 2.0.13)
2022
rxode2random : Random Number Generation Functions for 'rxode2' (Version 2.1.1)
2022
image.dlib : Image Processing Functionality using the 'dlib' Package (Version 0.1.1)
2020
landscapetools : Landscape Utility Toolbox (Version 0.5.0)
2018
rxode2parse : Parsing and Code Generation Functions for 'rxode2' (Version 2.0.19)
2022
sphereTessellation : Delaunay and Voronoï Tessellations on the Sphere (Version 1.2.0)
2023
physiology : Calculate physiologic characteristics of awake and anesthetized adults, children and infants (Version 1.2.1)
2015
cycleRtools : Tools for Cycling Data Analysis (Version 1.1.1)
2015
diffudist : Diffusion Distance for Complex Networks (Version 1.0.1)
2021
bayesGAM : Fit Multivariate Response Generalized Additive Models using Hamiltonian Monte Carlo (Version 0.0.2)
2020
readxlsb : Read 'Excel' Binary (.xlsb) Workbooks (Version 0.1.61)
2019
rego : Automatic Time Series Forecasting and Missing Value Imputation (Version 1.6.1)
2022
binaryMM : Flexible Marginalized Models for Binary Correlated Outcomes (Version 0.1.1)
2022
dartR : Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis (Version 2.9.9.5)
2017
rmi : Mutual Information Estimators (Version 0.1.1)
2018
ConConPiWiFun : Optimisation with Continuous Convex Piecewise (Linear and Quadratic) Functions (Version 0.4.6.1)
2013
FeatureHashing : Creates a Model Matrix via Feature Hashing with a Formula Interface (Version 0.9.2)
2014
IOHexperimenter : Benchmarking Part of the 'IOHprofiler' (Version 0.1.4)
2020
MRS : Multi-Resolution Scanning for Cross-Sample Differences (Version 1.2.6)
2015
PPtreeregViz : Projection Pursuit Regression Tree Visualization (Version 2.0.5)
2022
VARDetect : Multiple Change Point Detection in Structural VAR Models (Version 0.1.8)
2021
elections.dtree : Ranked Voting Election Audits with Dirichlet-Trees (Version 2.0.0)
2022
exceedProb : Confidence Intervals for Exceedance Probability (Version 0.0.1)
2019
ondisc : Fast, Universal, and Intuitive Computing on Large-Scale Single-Cell Data (Version 1.0.0)
2021
synthACS : Synthetic Microdata and Spatial MicroSimulation Modeling for ACS Data (Version 1.7.1)
2016
fastQR : Fast QR Decomposition and Update (Version 1.1.4)
2025
btb : Beyond the Border - Kernel Density Estimation for Urban Geography (Version 0.2.2)
2016
nbfar : Negative Binomial Factor Regression Models ('nbfar') (Version 0.1)
2022
spectralGraphTopology : Learning Graphs from Data via Spectral Constraints (Version 0.2.3)
2019
XBRL : Extraction of Business Financial Information from 'XBRL' Documents (Version 0.99.19.1)
2013
classifierplots : Generates a Visualization of Classifier Performance as a Grid of Diagnostic Plots (Version 1.4.0)
2017
clogitL1 : Fitting Exact Conditional Logistic Regression with Lasso and Elastic Net Penalties (Version 1.5)
2013
covafillr : Local Polynomial Regression of State Dependent Covariates in State-Space Models (Version 0.4.4)
2016
cppRouting : Algorithms for Routing and Solving the Traffic Assignment Problem (Version 3.2)
2019
ADMMsigma : Penalized Precision Matrix Estimation via ADMM (Version 2.1)
2018
ALassoSurvIC : Adaptive Lasso for the Cox Regression with Interval Censored and Possibly Left Truncated Data (Version 0.1.1)
2019
APackOfTheClones : Visualization of Clonal Expansion for Single Cell Immune Profiles (Version 1.3.0)
2023
ARCensReg : Fitting Univariate Censored Linear Regression Model with Autoregressive Errors (Version 3.0.2)
2016
ATAforecasting : Automatic Time Series Analysis and Forecasting using the Ata Method (Version 0.0.61)
2021
AcceptReject : Acceptance-Rejection Method for Generating Pseudo-Random Observations (Version 0.1.2)
2024
AlphaPart : Partition/Decomposition of Breeding Values by Paths of Information (Version 0.9.8)
2019
AnaCoDa : Analysis of Codon Data under Stationarity using a Bayesian Framework (Version 0.1.4.4)
2018
AntMAN : Anthology of Mixture Analysis Tools (Version 1.1.0)
2019
AovBay : Classic, Nonparametric and Bayesian One-Way Analysis of Variance Panel (Version 0.1.0)
2021
Apoderoides : Prioritize and Delete Erroneous Taxa in a Large Phylogenetic Tree (Version 3.0.1)
2024
Apollonius : 2D Apollonius Graphs (Version 1.0.1)
2023
BAMMtools : Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees (Version 2.1.12)
2014
BCSub : A Bayesian Semiparametric Factor Analysis Model for Subtype Identification (Clustering) (Version 0.5)
2016
BClustLonG : A Dirichlet Process Mixture Model for Clustering Longitudinal Gene Expression Data (Version 0.1.3)
2017
BHMSMAfMRI : Bayesian Hierarchical Multi-Subject Multiscale Analysis of Functional MRI (fMRI) Data (Version 2.3)
2014
BMisc : Miscellaneous Functions for Panel Data, Quantiles, and Printing Results (Version 1.4.8)
2017
BPrinStratTTE : Causal Effects in Principal Strata Defined by Antidrug Antibodies (Version 0.0.7)
2023
BTYDplus : Probabilistic Models for Assessing and Predicting your Customer Base (Version 1.2.0)
2016
BVSNLP : Bayesian Variable Selection in High Dimensional Settings using Nonlocal Priors (Version 1.1.9)
2017
BayesComm : Bayesian Community Ecology Analysis (Version 0.1-2)
2014
BayesReversePLLH : Fits the Bayesian Piecewise Linear Log-Hazard Model (Version 1.5)
2020
BayesSUR : Bayesian Seemingly Unrelated Regression Models in High-Dimensional Settings (Version 2.3-1)
2019
BayesSenMC : Different Models of Posterior Distributions of Adjusted Odds Ratio (Version 0.1.5)
2019
BayesianTools : General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics (Version 0.1.8)
2017
BeeGUTS : General Unified Threshold Model of Survival for Bees using Bayesian Inference (Version 1.5.0)
2022
BipartiteModularityMaximization : Partition Bipartite Network into Non-Overlapping Biclusters by Optimizing Bipartite Modularity (Version 1.23.120.1)
2022
Blend : Robust Bayesian Longitudinal Regularized Semiparametric Mixed Models (Version 0.1.1.1)
2024
BondValuation : Fixed Coupon Bond Valuation Allowing for Odd Coupon Periods and Various Day Count Conventions (Version 0.1.1)
2018
BranchGLM : Efficient Best Subset Selection for GLMs via Branch and Bound Algorithms (Version 3.0.1)
2022
Buddle : A Deep Learning for Statistical Classification and Regression Analysis with Random Effects (Version 2.0.2)
2018
CAESAR.Suite : CAESAR: a Cross-Technology and Cross-Resolution Framework for Spatial Omics Annotation (Version 0.3.0)
2024
CARBayesST : Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data (Version 4.0)
2014
CASMAP : Detection of Statistically Significant Combinations of SNPs in Association Mapping (Version 0.6.1)
2018
CKLRT : Composite Kernel Machine Regression Based on Likelihood Ratio Test (Version 0.2.3)
2018
CKMRpop : Forward-in-Time Simulation and Tallying of Pairwise Relationships (Version 0.1.3)
2021
COAP : High-Dimensional Covariate-Augmented Overdispersed Poisson Factor Model (Version 1.3)
2024
CRTConjoint : Conditional Randomization Testing (CRT) Approach for Conjoint Analysis (Version 0.1.0)
2022
CVR : Canonical Variate Regression (Version 0.1.1)
2017
CamelUp : 'CamelUp' Board Game as a Teaching Aid for Introductory Statistics (Version 2.0.3)
2019
CatReg : Solution Paths for Linear and Logistic Regression Models with Categorical Predictors, with SCOPE Penalty (Version 2.0.4)
2020
CausalGPS : Matching on Generalized Propensity Scores with Continuous Exposures (Version 0.5.1)
2021
CautiousLearning : Control Charts with Guaranteed In-Control Performance and Cautious Parameters Learning (Version 1.0.1)
2019
Cleanet : Automated Doublet Detection and Classification for Cytometry Data (Version 1.0.0)
2024
ClusPred : Simultaneous Semi-Parametric Estimation of Clustering and Regression (Version 1.1.0)
2021
ClusROC : ROC Analysis in Three-Class Classification Problems for Clustered Data (Version 1.0.3)
2022
ClusVis : Gaussian-Based Visualization of Gaussian and Non-Gaussian Model-Based Clustering (Version 1.2.0)
2017
ClusterR : Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans, K-Medoids and Affinity Propagation Clustering (Version 1.3.6)
2016
ClusterStability : Assessment of Stability of Individual Objects or Clusters in Partitioning Solutions (Version 1.0.4)
2015
CodeDepends : Analysis of R Code for Reproducible Research and Code Comprehension (Version 0.6.7)
2017
Colossus : "Risk Model Regression and Analysis with Complex Non-Linear Models" (Version 1.4.6)
2023
ConjointChecks : Implementation of a Method to Check the Cancellation Axioms of Additive Conjoint Measurement (Version 0.2.0)
2012
ConsReg : Fits Regression & ARMA Models Subject to Constraints to the Coefficient (Version 0.1.0)
2020
CoxPlus : Cox Regression (Proportional Hazards Model) with Multiple Causes and Mixed Effects (Version 1.5.7)
2015
CptNonPar : Nonparametric Change Point Detection for Multivariate Time Series (Version 0.3.2)
2023
Cyclops : Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis (Version 3.6.0)
2016
CytoSimplex : Simplex Visualization of Cell Fate Similarity in Single-Cell Data (Version 0.2.0)
2023
DAISIE : Dynamical Assembly of Islands by Speciation, Immigration and Extinction (Version 4.6.0)
2015
DCEM : Clustering Big Data using Expectation Maximization Star (EM*) Algorithm (Version 2.0.5)
2018
DCSmooth : Nonparametric Regression and Bandwidth Selection for Spatial Models (Version 1.1.2)
2021
DPP : Inference of Parameters of Normal Distributions from a Mixture of Normals (Version 0.1.2)
2017
DTRKernSmooth : Estimate and Make Inference About Optimal Treatment Regimes via Smoothed Methods (Version 1.1.0)
2023
DiscreteFDR : FDR Based Multiple Testing Procedures with Adaptation for Discrete Tests (Version 2.1.0)
2018
DiscreteFWER : FWER-Based Multiple Testing Procedures with Adaptation for Discrete Tests (Version 1.0.0)
2024
EAinference : Estimator Augmentation and Simulation-Based Inference (Version 0.2.3)
2017
EBMAforecast : Estimate Ensemble Bayesian Model Averaging Forecasts using Gibbs Sampling or EM-Algorithms (Version 1.0.32)
2012
EFAtools : Fast and Flexible Implementations of Exploratory Factor Analysis Tools (Version 0.6.1)
2020
EMMIXgene : A Mixture Model-Based Approach to the Clustering of Microarray Expression Data (Version 0.1.4)
2018
EMgaussian : Expectation-Maximization Algorithm for Multivariate Normal (Gaussian) with Missing Data (Version 0.2.2)
2024
EWGoF : Goodness-of-Fit Tests for the Exponential and Two-Parameter Weibull Distributions (Version 2.2.2)
2014
EloSteepness : Bayesian Dominance Hierarchy Steepness via Elo Rating and David's Scores (Version 0.5.0)
2022
EmpiricalCalibration : Routines for Performing Empirical Calibration of Observational Study Estimates (Version 3.1.4)
2016
EpiLPS : A Fast and Flexible Bayesian Tool for Estimating Epidemiological Parameters (Version 1.3.0)
2021
EpiNow2 : Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters (Version 1.7.1)
2020
EquiTrends : Equivalence Testing for Pre-Trends in Difference-in-Differences Designs (Version 1.0.0)
2024
EthSEQ : Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data (Version 3.0.2)
2017
FBCRM : Phase I Optimal Dose Assignment using the FBCRM and MFBCRM Methods (Version 1.1)
2022
FBFsearch : Algorithm for Searching the Space of Gaussian Directed Acyclic Graph Models Through Moment Fractional Bayes Factors (Version 1.3)
2013
FDX : False Discovery Exceedance Controlling Multiple Testing Procedures (Version 2.0.2)
2020
FMCCSD : Efficient Estimation of Clustered Current Status Data (Version 1.0)
2020
FORTLS : Automatic Processing of Terrestrial-Based Technologies Point Cloud Data for Forestry Purposes (Version 1.6.2)
2021
FSSF : Generate Fully-Sequential Space-Filling Designs Inside a Unit Hypercube (Version 0.1.2)
2020
FSelectorRcpp : 'Rcpp' Implementation of 'FSelector' Entropy-Based Feature Selection Algorithms with a Sparse Matrix Support (Version 0.3.13)
2017
FactorHet : Estimate Heterogeneous Effects in Factorial Experiments Using Grouping and Sparsity (Version 1.0.0)
2025
FamilyRank : Algorithm for Ranking Predictors Using Graphical Domain Knowledge (Version 1.0)
2021
FastBandChol : Fast Estimation of a Covariance Matrix by Banding the Cholesky Factor (Version 0.1.1)
2015
FarmSelect : Factor Adjusted Robust Model Selection (Version 1.0.2)
2018
FastSF : Fast Structural Filtering (Version 0.1.1)
2017
GAGAs : Global Adaptive Generative Adjustment Algorithm for Generalized Linear Models (Version 0.6.2)
2022
GBJ : Generalized Berk-Jones Test for Set-Based Inference in Genetic Association Studies (Version 0.5.4)
2017
GCPBayes : Bayesian Meta-Analysis of Pleiotropic Effects Using Group Structure (Version 4.3.0)
2021
GEEaSPU : Adaptive Association Tests for Multiple Phenotypes using Generalized Estimating Equations (GEE) (Version 1.0.2)
2016
GFDmcv : General Hypothesis Testing Problems for Multivariate Coefficients of Variation (Version 0.1.0)
2023
GGMncv : Gaussian Graphical Models with Nonconvex Regularization (Version 2.1.1)
2020
GLMaSPU : An Adaptive Test on High Dimensional Parameters in Generalized Linear Models (Version 1.0)
2016
GMKMcharlie : Unsupervised Gaussian Mixture and Minkowski and Spherical K-Means with Constraints (Version 1.1.5)
2019
GPBayes : Tools for Gaussian Process Modeling in Uncertainty Quantification (Version 0.1.0-6)
2021
GPCERF : Gaussian Processes for Estimating Causal Exposure Response Curves (Version 0.2.4)
2022
GPCMlasso : Differential Item Functioning in Generalized Partial Credit Models (Version 0.1-8)
2018
GPM : Gaussian Process Modeling of Multi-Response and Possibly Noisy Datasets (Version 3.0.1)
2018
GPvam : Maximum Likelihood Estimation of Multiple Membership Mixed Models Used in Value-Added Modeling (Version 3.2-0)
2012
GSE : Robust Estimation in the Presence of Cellwise and Casewise Contamination and Missing Data (Version 4.2-3)
2013
GUILDS : Implementation of Sampling Formulas for the Unified Neutral Model of Biodiversity and Biogeography, with or without Guild Structure (Version 1.4.7)
2014
GUTS : Fast Calculation of the Likelihood of a Stochastic Survival Model (Version 1.2.6)
2011
GUniFrac : Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis (Version 1.9)
2012
GWASinlps : Non-Local Prior Based Iterative Variable Selection Tool for Genome-Wide Association Studies (Version 2.4)
2017
GWEX : Multi-Site Stochastic Models for Daily Precipitation and Temperature (Version 1.1.3)
2019
GiniDistance : A New Gini Correlation Between Quantitative and Qualitative Variables (Version 0.1.1)
2019
GrpString : Patterns and Statistical Differences Between Two Groups of Strings (Version 0.3.2)
2017
HACSim : Iterative Extrapolation of Species' Haplotype Accumulation Curves for Genetic Diversity Assessment (Version 1.0.7-1)
2019
HDLSSkST : Distribution-Free Exact High Dimensional Low Sample Size k-Sample Tests (Version 2.1.0)
2020
HDNRA : High-Dimensional Location Testing with Normal-Reference Approaches (Version 2.0.1)
2024
HDclust : Clustering High Dimensional Data with Hidden Markov Model on Variable Blocks (Version 1.0.4)
2018
HMB : Hierarchical Model-Based Estimation Approach (Version 1.1)
2018
HMMEsolver : A Fast Solver for Henderson Mixed Model Equation via Row Operations (Version 0.1.2)
2017
HMMmlselect : Determine the Number of States in Hidden Markov Models via Marginal Likelihood (Version 0.1.6)
2019
HiGarrote : Nonnegative Garrote Method Incorporating Hierarchical Relationships (Version 2.0.0)
2024
ICtest : Estimating and Testing the Number of Interesting Components in Linear Dimension Reduction (Version 0.3-6)
2016
ILSE : Linear Regression Based on 'ILSE' for Missing Data (Version 1.1.7)
2022
Immigrate : Iterative Max-Min Entropy Margin-Maximization with Interaction Terms for Feature Selection (Version 0.2.1)
2018
InteRD : The Integrated and Robust Deconvolution (Version 0.1.1)
2022
IntegratedMRF : Integrated Prediction using Uni-Variate and Multivariate Random Forests (Version 1.1.9)
2016
IrishDirectorates : A Dynamic Bipartite Latent Space Model to Analyse Irish Companies' Boards from 2003 to 2013 (Version 1.5)
2016
JMbayes : Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach (Version 0.9-0)
2012
KSgeneral : Computing P-Values of the One-Sample K-S Test and the Two-Sample K-S and Kuiper Tests for (Dis)Continuous Null Distribution (Version 2.0.2)
2018
KoulMde : Koul's Minimum Distance Estimation in Regression and Image Segmentation Problems (Version 3.2.1)
2015
LARisk : Estimation of Lifetime Attributable Risk of Cancer from Radiation Exposure (Version 1.0.0)
2019
LaMa : Fast Numerical Maximum Likelihood Estimation for Latent Markov Models (Version 2.0.6)
2024
LambertW : Probabilistic Models to Analyze and Gaussianize Heavy-Tailed, Skewed Data (Version 0.6.9-2)
2009
LassoBacktracking : Modelling Interactions in High-Dimensional Data with Backtracking (Version 1.1)
2016
LikertMakeR : Synthesise and Correlate Likert Scale and Rating-Scale Data Based on Summary Statistics (Version 1.3.0)
2022
LocalControl : Nonparametric Methods for Generating High Quality Comparative Effectiveness Evidence (Version 1.1.4)
2017
LongMemoryTS : Long Memory Time Series (Version 0.1.0)
2019
MAPITR : MArginal ePIstasis Test for Regions (Version 1.1.2)
2020
MDDC : Modified Detecting Deviating Cells Algorithm in Pharmacovigilance (Version 1.1.0)
2024
MIRES : Measurement Invariance Assessment Using Random Effects Models and Shrinkage (Version 0.1.1)
2021
MNARclust : Clustering Data with Non-Ignorable Missingness using Semi-Parametric Mixture Models (Version 1.1.0)
2021
MSCA : Unsupervised Clustering of Multiple Censored Time-to-Event Endpoints (Version 1.2.1)
2025
MSIMST : Bayesian Monotonic Single-Index Regression Model with the Skew-T Likelihood (Version 1.1)
2024
MSmix : Finite Mixtures of Mallows Models with Spearman Distance for Full and Partial Rankings (Version 2.0.0)
2024
MTS : All-Purpose Toolkit for Analyzing Multivariate Time Series (MTS) and Estimating Multivariate Volatility Models (Version 1.2.1)
2014
MagmaClustR : Clustering and Prediction using Multi-Task Gaussian Processes with Common Mean (Version 1.2.1)
2022
ManifoldOptim : An R Interface to the 'ROPTLIB' Library for Riemannian Manifold Optimization (Version 1.0.1)
2016
MarZIC : Marginal Mediation Effects with Zero-Inflated Compositional Mediator (Version 1.0.1)
2023
MatrixLDA : Penalized Matrix-Normal Linear Discriminant Analysis (Version 0.2)
2016
MetaHD : A Multivariate Meta-Analysis Model for High-Dimensional Metabolomics Data (Version 0.1.3)
2024
MomTrunc : Moments of Folded and Doubly Truncated Multivariate Distributions (Version 6.1)
2018
Morpho : Calculations and Visualisations Related to Geometric Morphometrics (Version 2.13)
2013
MultiCOAP : High-Dimensional Covariate-Augmented Overdispersed Multi-Study Poisson Factor Model (Version 1.1)
2024
MultiFit : Multiscale Fisher's Independence Test for Multivariate Dependence (Version 1.1.1)
2018
N2R : Fast and Scalable Approximate k-Nearest Neighbor Search Methods using 'N2' Library (Version 1.0.3)
2020
NCutYX : Clustering of Omics Data of Multiple Types with a Multilayer Network Representation (Version 0.1.0)
2018
NPflow : Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry Data (Version 0.13.6)
2016
NestedCategBayesImpute : Modeling, Imputing and Generating Synthetic Versions of Nested Categorical Data in the Presence of Impossible Combinations (Version 1.2.1)
2016
OTclust : Mean Partition, Uncertainty Assessment, Cluster Validation and Visualization Selection for Cluster Analysis (Version 1.0.6)
2019
OptCirClust : Circular, Periodic, or Framed Data Clustering: Fast, Optimal, and Reproducible (Version 0.0.4)
2020
PAC : Partition-Assisted Clustering and Multiple Alignments of Networks (Version 1.1.6)
2016
PAGFL : Joint Estimation of Latent Groups and Group-Specific Coefficients in (Time-Varying) Panel Data Models (Version 1.1.4)
2024
PCObw : Bandwidth Selector with Penalized Comparison to Overfitting Criterion (Version 0.0.1)
2022
PHSMM : Penalised Maximum Likelihood Estimation for Hidden Semi-Markov Models (Version 1.0)
2021
POMaSPU : Adaptive Association Tests for Multiple Phenotypes using Proportional Odds Model (POM-aSPU) (Version 1.0.0)
2017
PPSFS : Partial Profile Score Feature Selection in High-Dimensional Generalized Linear Interaction Models (Version 0.1.1)
2022
PQLseq : Efficient Mixed Model Analysis of Count Data in Large-Scale Genomic Sequencing Studies (Version 1.2.1)
2018
PRECAST : Embedding and Clustering with Alignment for Spatial Omics Datasets (Version 1.8)
2022
PanelCount : Random Effects and/or Sample Selection Models for Panel Count Data (Version 2.0.1)
2015
PanelMatch : Matching Methods for Causal Inference with Time-Series Cross-Sectional Data (Version 3.1.3)
2020
Peptides : Calculate Indices and Theoretical Physicochemical Properties of Protein Sequences (Version 2.4.6)
2014
Phase12Compare : Simulates SPSO and Efftox Phase 12 Trials with Correlated Outcomes (Version 1.5)
2019
PheVis : Automatic Phenotyping of Electronic Health Record at Visit Resolution (Version 1.0.4)
2021
PhenotypeSimulator : Flexible Phenotype Simulation from Different Genetic and Noise Models (Version 0.3.4)
2017
PieceExpIntensity : Bayesian Model to Find Changepoints Based on Rates and Count Data (Version 1.0.4)
2017
PoissonBinomial : Efficient Computation of Ordinary and Generalized Poisson Binomial Distributions (Version 1.2.7)
2020
ProFAST : Probabilistic Factor Analysis for Spatially-Aware Dimension Reduction (Version 1.7)
2023
QRM : Provides R-Language Code to Examine Quantitative Risk Management Concepts (Version 0.4-35)
2012
QTL.gCIMapping.GUI : QTL Genome-Wide Composite Interval Mapping with Graphical User Interface (Version 2.1.1)
2018
QuadratiK : Collection of Methods Constructed using Kernel-Based Quadratic Distances (Version 1.1.3)
2024
QuantRegGLasso : Adaptively Weighted Group Lasso for Semiparametric Quantile Regression Models (Version 1.0.1)
2024
Quartet : Comparison of Phylogenetic Trees Using Quartet and Split Measures (Version 1.2.7)
2019
RCTRecruit : Non-Parametric Recruitment Prediction for Randomized Clinical Trials (Version 0.2.0)
2025
REndo : Fitting Linear Models with Endogenous Regressors using Latent Instrumental Variables (Version 2.4.10)
2015
RI2by2 : Randomization Inference for Treatment Effects on a Binary Outcome (Version 1.4)
2014
RITCH : R Parser for the ITCH-Protocol (Version 0.1.26)
2023
RJcluster : A Fast Clustering Algorithm for High Dimensional Data Based on the Gram Matrix Decomposition (Version 3.2.4)
2020
RKHSMetaMod : Ridge Group Sparse Optimization Problem for Estimation of a Meta Model Based on Reproducing Kernel Hilbert Spaces (Version 1.1)
2019
RLRsim : Exact (Restricted) Likelihood Ratio Tests for Mixed and Additive Models (Version 3.1-9)
2007
RLumModel : Solving Ordinary Differential Equations to Understand Luminescence (Version 0.2.11)
2016
RMixtCompIO : Minimal Interface of the C++ 'MixtComp' Library for Mixture Models with Heterogeneous and (Partially) Missing Data (Version 4.0.11)
2019
RPEGLMEN : Gamma and Exponential Generalized Linear Models with Elastic Net Penalty (Version 1.1.4)
2019
RPtests : Goodness of Fit Tests for High-Dimensional Linear Regression Models (Version 0.1.5)
2016
RSNNS : Neural Networks using the Stuttgart Neural Network Simulator (SNNS) (Version 0.4-17)
2010
RSSL : Implementations of Semi-Supervised Learning Approaches for Classification (Version 0.9.8)
2016
RScelestial : Scelestial: Steiner Tree Based Single-Cell Lineage Tree Inference (Version 1.0.4)
2019
RTSA : 'Trial Sequential Analysis' for Error Control and Inference in Sequential Meta-Analyses (Version 0.2.2)
2023
RTransferEntropy : Measuring Information Flow Between Time Series with Shannon and Renyi Transfer Entropy (Version 0.2.21)
2018
RaceID : Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data (Version 0.3.9)
2018
Rborist : Extensible, Parallelizable Implementation of the Random Forest Algorithm (Version 0.3-11)
2015
RcppAnnoy : 'Rcpp' Bindings for 'Annoy', a Library for Approximate Nearest Neighbors (Version 0.0.23)
2014
RcppArmadillo : 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library (Version 15.2.3-1)
2010
RcppBlaze : 'Rcpp' Integration for the 'Blaze' High-Performance 'C++' Math Library (Version 1.0.1)
2017
RcppEigen : 'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library (Version 0.3.4.0.2)
2011
RcppEnsmallen : Header-Only C++ Mathematical Optimization Library for 'Armadillo' (Version 0.3.10.0.1)
2018
RcppFastFloat : 'Rcpp' Bindings for the 'fast_float' Header-Only Library for Number Parsing (Version 0.0.5)
2021
RcppHNSW : 'Rcpp' Bindings for 'hnswlib', a Library for Approximate Nearest Neighbors (Version 0.6.0)
2019
RcppInt64 : 'Rcpp'-Based Helper Functions to Pass 'Int64' and 'nanotime' Values Between 'R' and 'C++' (Version 0.0.5)
2023
RcppSimdJson : 'Rcpp' Bindings for the 'simdjson' Header-Only Library for 'JSON' Parsing (Version 0.1.15)
2020
RcppStreams : 'Rcpp' Integration of the 'Streamulus' 'DSEL' for Stream Processing (Version 0.1.4)
2015
RcppZiggurat : 'Rcpp' Integration of Different "Ziggurat" Normal RNG Implementations (Version 0.1.8)
2013
ReAD : Powerful Replicability Analysis of Genome-Wide Association Studies (Version 1.0.1)
2023
RecAssoRules : Recursive Mining for Frequent Pattern and Confident Association Rules (Version 1.0)
2020
Rforestry : Random Forests, Linear Trees, and Gradient Boosting for Inference and Interpretability (Version 0.11.1.0)
2021
Rirt : Data Analysis and Parameter Estimation Using Item Response Theory (Version 0.0.2)
2019
Rlibeemd : Ensemble Empirical Mode Decomposition (EEMD) and Its Complete Variant (CEEMDAN) (Version 1.4.4)
2015
Rlibkdv : A Versatile Kernel Density Visualization Library for Geospatial Analytics (Heatmap) (Version 1.1)
2023
Rmalschains : Continuous Optimization using Memetic Algorithms with Local Search Chains (MA-LS-Chains) (Version 0.2-10)
2012
Rmodule : Automated Markov Chain Monte Carlo for Arbitrarily Structured Correlation Matrices (Version 1.0)
2023
Rnmr1D : Perform the Complete Processing of a Set of Proton Nuclear Magnetic Resonance Spectra (Version 1.3.2)
2018
Rphylopars : Phylogenetic Comparative Tools for Missing Data and Within-Species Variation (Version 0.3.10)
2015
Rquefts : Quantitative Evaluation of the Native Fertility of Tropical Soils (Version 1.2-5)
2019
Rtsne : T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation (Version 0.17)
2014
SAGMM : Clustering via Stochastic Approximation and Gaussian Mixture Models (Version 0.2.5)
2019
SBMTrees : Longitudinal Sequential Imputation and Prediction with Bayesian Trees Mixed-Effects Models for Longitudinal Data (Version 1.4)
2024
SC.MEB : Spatial Clustering with Hidden Markov Random Field using Empirical Bayes (Version 1.1)
2021
SCCI : Stochastic Complexity-Based Conditional Independence Test for Discrete Data (Version 1.2)
2019
SCIntRuler : Guiding the Integration of Multiple Single-Cell RNA-Seq Datasets (Version 0.99.6)
2024
SELF : A Structural Equation Embedded Likelihood Framework for Causal Discovery (Version 0.1.1)
2017
SGPR : Sparse Group Penalized Regression for Bi-Level Variable Selection (Version 0.1.2)
2024
SILGGM : Statistical Inference of Large-Scale Gaussian Graphical Model in Gene Networks (Version 1.0.0)
2017
SIMplyBee : 'AlphaSimR' Extension for Simulating Honeybee Populations and Breeding Programmes (Version 0.4.1)
2022
SIRmcmc : Compartmental Susceptible-Infectious-Recovered (SIR) Model of Community and Household Infection (Version 1.1.1)
2021
SMITIDvisu : Visualize Data for Host and Viral Population from 'SMITIDstruct' using 'HTMLwidgets' (Version 0.0.9)
2019
SNSeg : Self-Normalization(SN) Based Change-Point Estimation for Time Series (Version 1.0.3)
2023
SPARSEMODr : SPAtial Resolution-SEnsitive Models of Outbreak Dynamics (Version 1.2.0)
2020
STAREG : An Empirical Bayes Approach for Replicability Analysis Across Two Studies (Version 1.0.4)
2023
STARTdesign : Single to Double Arm Transition Design for Phase II Clinical Trials (Version 1.0)
2017
SUNGEO : Sub-National Geospatial Data Archive: Geoprocessing Toolkit (Version 1.3.0)
2020
SequenceSpikeSlab : Exact Bayesian Model Selection Methods for the Sparse Normal Sequence Model (Version 1.0.1)
2019
SeqNet : Generate RNA-Seq Data from Gene-Gene Association Networks (Version 1.1.3)
2019
SimTOST : Sample Size Estimation for Bio-Equivalence Trials Through Simulation (Version 1.0.2)
2025
SpaCOAP : High-Dimensional Spatial Covariate-Augmented Overdispersed Poisson Factor Model (Version 1.3)
2024
SpaDES.tools : Additional Tools for Developing Spatially Explicit Discrete Event Simulation (SpaDES) Models (Version 2.1.1)
2017
SpaTopic : Topic Inference to Identify Tissue Architecture in Multiplexed Images (Version 1.2.0)
2024
SparseChol : Sparse Matrix C++ Classes Including Sparse Cholesky LDL Decomposition of Symmetric Matrices (Version 0.3.2)
2022
SparseLPM : The Sparse Latent Position Model for Nonnegative Interaction Data (Version 1.0)
2018
SpecsVerification : Forecast Verification Routines for Ensemble Forecasts of Weather and Climate (Version 0.5-3)
2014
StempCens : Spatio-Temporal Estimation and Prediction for Censored/Missing Responses (Version 1.2.0)
2019
StepwiseTest : Multiple Testing Method to Control Generalized Family-Wise Error Rate and False Discovery Proportion (Version 1.0)
2016
SuperGauss : Superfast Likelihood Inference for Stationary Gaussian Time Series (Version 2.0.4)
2017
SurrogateBMA : Flexible Evaluation of Surrogate Markers with Bayesian Model Averaging (Version 1.0)
2024
TESS : Diversification Rate Estimation and Fast Simulation of Reconstructed Phylogenetic Trees under Tree-Wide Time-Heterogeneous Birth-Death Processes Including Mass-Extinction Events (Version 2.1.2)
2012
TFMPvalue : Efficient and Accurate P-Value Computation for Position Weight Matrices (Version 1.0.0)
2014
TFRE : A Tuning-Free Robust and Efficient Approach to High-Dimensional Regression (Version 0.1.0)
2024
TauStar : Efficient Computation and Testing of the Bergsma-Dassios Sign Covariance (Version 1.1.8)
2015
TestCor : FWER and FDR Controlling Procedures for Multiple Correlation Tests (Version 0.0.2.2)
2019
TestDesign : Optimal Test Design Approach to Fixed and Adaptive Test Construction (Version 1.7.0)
2019
TukeyRegion : Tukey Region and Median (Version 0.1.6.3)
2017
UtilityFrailtyPH12 : Implementing EFF-TOX and Monotone Utility Based Phase 12 Trials (Version 1.0)
2019
VBel : Variational Bayes for Fast and Accurate Empirical Likelihood Inference (Version 1.1.7)
2024
VarSelLCM : Variable Selection for Model-Based Clustering of Mixed-Type Data Set with Missing Values (Version 2.1.3.2)
2015
WeightedTreemaps : Generate and Plot Voronoi or Sunburst Treemaps from Hierarchical Data (Version 0.1.4)
2023
WhiteLabRt : Novel Methods for Reproduction Number Estimation, Back-Calculation, and Forecasting (Version 1.0.1)
2024
XDNUTS : Discontinuous Hamiltonian Monte Carlo with Varying Trajectory Length (Version 1.6.5)
2024
YPBP : Yang and Prentice Model with Baseline Distribution Modeled by Bernstein Polynomials (Version 0.0.1)
2020
YPInterimTesting : Interim Monitoring Using Adaptively Weighted Log-Rank Test in Clinical Trials (Version 1.0.3)
2017
YPPE : Yang and Prentice Model with Piecewise Exponential Baseline Distribution (Version 1.0.1)
2019
YatchewTest : Yatchew (1997), De Chaisemartin & D'Haultfoeuille (2024) Linearity Test (Version 1.1.1)
2024
activegp : Gaussian Process Based Design and Analysis for the Active Subspace Method (Version 1.1.1)
2020
ade4 : Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences (Version 1.7-23)
2002
adjSURVCI : Parameter and Adjusted Probability Estimation for Right-Censored Data (Version 1.0)
2021
adjclust : Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix (Version 0.6.11)
2017
adpss : Design and Analysis of Locally or Globally Efficient Adaptive Designs (Version 0.1.2)
2018
aftgee : Accelerated Failure Time Model with Generalized Estimating Equations (Version 1.2.1)
2012
aihuman : Experimental Evaluation of Algorithm-Assisted Human Decision-Making (Version 1.0.1)
2023
alphabetr : Algorithms for High-Throughput Sequencing of Antigen-Specific T Cells (Version 0.2.2)
2017
aphylo : Statistical Inference and Prediction of Annotations in Phylogenetic Trees (Version 0.3-6)
2022
aricode : Efficient Computations of Standard Clustering Comparison Measures (Version 1.0.3)
2018
asmbPLS : Predicting and Classifying Patient Phenotypes with Multi-Omics Data (Version 1.0.0)
2023
augSIMEX : Analysis of Data with Mixed Measurement Error and Misclassification in Covariates (Version 3.7.4)
2017
baclava : Bayesian Analysis of Cancer Latency with Auxiliary Variable Augmentation (Version 1.1)
2024
baggingbwsel : Bagging Bandwidth Selection in Kernel Density and Regression Estimation (Version 1.1)
2021
bamm : Species Distribution Models as a Function of Biotic, Abiotic and Movement Factors (BAM) (Version 0.5.0)
2022
batchmix : Semi-Supervised Bayesian Mixture Models Incorporating Batch Correction (Version 2.2.1)
2022
batman : Convert Categorical Representations of Logicals to Actual Logicals (Version 0.1.0)
2015
bayesDP : Implementation of the Bayesian Discount Prior Approach for Clinical Trials (Version 1.3.7)
2017
bayesWatch : Bayesian Change-Point Detection for Process Monitoring with Fault Detection (Version 0.1.4)
2023
bayeslm : Efficient Sampling for Gaussian Linear Regression with Arbitrary Priors (Version 1.0.1)
2017
baygel : Bayesian Shrinkage Estimators for Precision Matrices in Gaussian Graphical Models (Version 0.3.0)
2023
bcROCsurface : Bias-Corrected Methods for Estimating the ROC Surface of Continuous Diagnostic Tests (Version 1.0-6)
2016
beastt : Bayesian Evaluation, Analysis, and Simulation Software Tools for Trials (Version 0.0.3)
2024
bggum : Bayesian Estimation of Generalized Graded Unfolding Model Parameters (Version 1.0.2)
2020
bigergm : Fit, Simulate, and Diagnose Hierarchical Exponential-Family Models for Big Networks (Version 1.2.5)
2024
bigmemory : Manage Massive Matrices with Shared Memory and Memory-Mapped Files (Version 4.6.4)
2008
binaryGP : Fit and Predict a Gaussian Process Model with (Time-Series) Binary Response (Version 0.2)
2017
bioacoustics : Analyse Audio Recordings and Automatically Extract Animal Vocalizations (Version 0.2.10)
2018
bisque : Approximate Bayesian Inference via Sparse Grid Quadrature Evaluation (BISQuE) for Hierarchical Models (Version 1.0.2)
2019
blockCV : Spatial and Environmental Blocking for K-Fold and LOO Cross-Validation (Version 3.2-0)
2020
blockForest : Block Forests: Random Forests for Blocks of Clinical and Omics Covariate Data (Version 0.2.7)
2018
blockmodels : Latent and Stochastic Block Model Estimation by a 'V-EM' Algorithm (Version 1.1.5)
2015
bpgmm : Bayesian Model Selection Approach for Parsimonious Gaussian Mixture Models (Version 1.1.1)
2019
breakfast : Methods for Fast Multiple Change-Point/Break-Point Detection and Estimation (Version 2.5)
2017
bsplinePsd : Bayesian Nonparametric Spectral Density Estimation Using B-Spline Priors (Version 0.6.0)
2017
bssm : Bayesian Inference of Non-Linear and Non-Gaussian State Space Models (Version 2.0.3)
2017
bvarsv : Bayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters (Version 1.1)
2014
bvartools : Bayesian Inference of Vector Autoregressive and Error Correction Models (Version 0.2.4)
2019
cPCG : Efficient and Customized Preconditioned Conjugate Gradient Method for Solving System of Linear Equations (Version 1.0)
2019
cctools : Tools for the Continuous Convolution Trick in Nonparametric Estimation (Version 0.1.3)
2017
cdcsis : Conditional Distance Correlation Based Feature Screening and Conditional Independence Inference (Version 2.0.5)
2014
cgAUC : Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it (Version 1.2.1)
2012
chillR : Statistical Methods for Phenology Analysis in Temperate Fruit Trees (Version 0.77)
2013
clustermq : Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM, PBS/Torque) (Version 0.9.9)
2017
cnaOpt : Optimizing Consistency and Coverage in Configurational Causal Modeling (Version 0.5.3)
2019
cocons : Covariate-Based Covariance Functions for Nonstationary Spatial Modeling (Version 0.1.5)
2024
coglasso : Collaborative Graphical Lasso - Multi-Omics Network Reconstruction (Version 1.1.0)
2024
collUtils : Auxiliary Package for Package 'CollapsABEL' (Version 1.0.5)
2016
communication : Feature Extraction and Model Estimation for Audio of Human Speech (Version 0.1)
2021
conStruct : Models Spatially Continuous and Discrete Population Genetic Structure (Version 1.0.6)
2018
coneproj : Primal or Dual Cone Projections with Routines for Constrained Regression (Version 1.23)
2013
corels : R Binding for the 'Certifiably Optimal RulE ListS (Corels)' Learner (Version 0.0.5)
2020
corrcoverage : Correcting the Coverage of Credible Sets from Bayesian Genetic Fine Mapping (Version 1.2.1)
2019
cramer : Multivariate Nonparametric Cramer-Test for the Two-Sample-Problem (Version 0.9-4)
2001
crawl : Fit Continuous-Time Correlated Random Walk Models to Animal Movement Data (Version 2.3.0)
2008
crfsuite : Conditional Random Fields for Labelling Sequential Data in Natural Language Processing (Version 0.4.2)
2018
crosstalkr : Analysis of Graph-Structured Data with a Focus on Protein-Protein Interaction Networks (Version 1.0.5)
2021
cstab : Selection of Number of Clusters via Normalized Clustering Instability (Version 0.2-2)
2016
ctmcd : Estimating the Parameters of a Continuous-Time Markov Chain from Discrete-Time Data (Version 1.4.4)
2016
cusum : Cumulative Sum (CUSUM) Charts for Monitoring of Hospital Performance (Version 0.4.1)
2018
cutpointr : Determine and Evaluate Optimal Cutpoints in Binary Classification Tasks (Version 1.2.1)
2018
datasailr : Row by Row Data Processing Tool, Using 'DataSailr' Script (Version 0.8.11)
2020
dbscan : Density-Based Spatial Clustering of Applications with Noise (DBSCAN) and Related Algorithms (Version 1.2.4)
2015
dcm2 : Calculating the M2 Model Fit Statistic for Diagnostic Classification Models (Version 1.0.2)
2023
dcortools : Providing Fast and Flexible Functions for Distance Correlation Analysis (Version 0.1.7)
2021
deformula : Integration of One-Dimensional Functions with Double Exponential Formulas (Version 0.1.2)
2015
demu : Optimal Design Emulators via Point Processes (Version 0.3.0)
2018
deseats : Data-Driven Locally Weighted Regression for Trend and Seasonality in TS (Version 1.1.1)
2023
detectRUNS : Detect Runs of Homozygosity and Runs of Heterozygosity in Diploid Genomes (Version 0.9.6)
2018
dexterMST : CML and Bayesian Calibration of Multistage Tests (Version 0.9.6)
2018
dfphase1 : Phase I Control Charts (with Emphasis on Distribution-Free Methods) (Version 1.2.0)
2016
diagis : Diagnostic Plot and Multivariate Summary Statistics of Weighted Samples from Importance Sampling (Version 0.2.3)
2016
disclapmix2 : Mixtures of Discrete Laplace Distributions using Numerical Optimisation (Version 0.6.1)
2023
distantia : Advanced Toolset for Efficient Time Series Dissimilarity Analysis (Version 2.0.2)
2019
diversityForest : Innovative Complex Split Procedures in Random Forests Through Candidate Split Sampling (Version 0.6.0)
2020
dnapath : Differential Network Analysis using Gene Pathways (Version 0.7.6)
2020
dosearch : Causal Effect Identification from Multiple Incomplete Data Sources (Version 1.0.12)
2019
dtwclust : Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance (Version 6.0.0)
2015
eDNAjoint : Joint Modeling of Traditional and Environmental DNA Survey Data in a Bayesian Framework (Version 0.3.3)
2024
earthtide : Parallel Implementation of 'ETERNA 3.40' for Prediction and Analysis of Earth Tides (Version 0.1.7)
2019
echelon : The Echelon Analysis and the Detection of Spatial Clusters using Echelon Scan Method (Version 0.4.0)
2020
ecp : Non-Parametric Multiple Change-Point Analysis of Multivariate Data (Version 3.1.6)
2013
edgebundle : Algorithms for Bundling Edges in Networks and Visualizing Flow and Metro Maps (Version 0.4.2)
2021
edina : Bayesian Estimation of an Exploratory Deterministic Input, Noisy and Gate Model (Version 0.1.2)
2020
edlibR : R Integration for Edlib, the C/C++ Library for Exact Pairwise Sequence Alignment using Edit (Levenshtein) Distance (Version 1.0.3)
2022
eive : An Algorithm for Reducing Errors-in-Variable Bias in Simple and Multiple Linear Regressions (Version 3.1.3)
2012
elfDistr : Kumaraswamy Complementary Weibull Geometric (Kw-CWG) Probability Distribution (Version 1.0.1)
2019
empichar : Evaluates the Empirical Characteristic Function for Multivariate Samples (Version 1.0.1)
2019
epizootic : Spatially Explicit Population Models of Disease Transmission in Wildlife (Version 2.0.0)
2024
evesim : Evolution Emulator: Species Diversification under an Evolutionary Relatedness Dependent Scenario (Version 1.0.0)
2025
fDMA : Dynamic Model Averaging and Dynamic Model Selection for Continuous Outcomes (Version 2.2.9)
2017
fabMix : Overfitting Bayesian Mixtures of Factor Analyzers with Parsimonious Covariance and Unknown Number of Components (Version 5.1)
2018
fableCount : INGARCH and GLARMA Models for Count Time Series in Fable Framework (Version 0.1.0)
2024
factorstochvol : Bayesian Estimation of (Sparse) Latent Factor Stochastic Volatility Models (Version 1.1.0)
2016
fasano.franceschini.test : Fasano-Franceschini Test: A Multivariate Kolmogorov-Smirnov Two-Sample Test (Version 2.2.2)
2021
fastJT : Efficient Jonckheere-Terpstra Test Statistics for Robust Machine Learning and Genome-Wide Association Studies (Version 1.0.8)
2017
fastRhockey : Functions to Access Premier Hockey Federation and National Hockey League Play by Play Data (Version 0.4.0)
2021
fastText : Efficient Learning of Word Representations and Sentence Classification (Version 1.0.5)
2021
fastTopics : Fast Algorithms for Fitting Topic Models and Non-Negative Matrix Factorizations to Count Data (Version 0.7-37)
2022
fastWavelets : Compute Maximal Overlap Discrete Wavelet Transform (MODWT) and À Trous Discrete Wavelet Transform (Version 1.0.1)
2022
fastglm : Fast and Stable Fitting of Generalized Linear Models using 'RcppEigen' (Version 0.0.4)
2019
fastkmedoids : Faster K-Medoids Clustering Algorithms: FastPAM, FastCLARA, FastCLARANS (Version 1.2)
2020
fastliu : Fast Functions for Liu Regression with Regularization Parameter and Statistics (Version 1.0)
2024
fastpos : Finds the Critical Sequential Point of Stability for a Pearson Correlation (Version 0.6.0)
2019
fbroc : Fast Algorithms to Bootstrap Receiver Operating Characteristics Curves (Version 0.4.1)
2015
fctbases : Functional Bases (Version 1.1.1)
2020
fdaconcur : Concurrent Regression and History Index Models for Functional Data (Version 0.1.3)
2022
fdadensity : Functional Data Analysis for Density Functions by Transformation to a Hilbert Space (Version 0.1.4)
2017
fdarep : Two-Dimensional FPCA, Marginal FPCA, and Product FPCA for Repeated Functional Data (Version 0.1.1)
2024
flamingos : Functional Latent Data Models for Clustering Heterogeneous Curves ('FLaMingos') (Version 0.1.0)
2019
forestControl : Approximate False Positive Rate Control in Selection Frequency for Random Forest (Version 0.2.2)
2018
fssemR : Fused Sparse Structural Equation Models to Jointly Infer Gene Regulatory Network (Version 0.1.8)
2019
gRc : Inference in Graphical Gaussian Models with Edge and Vertex Symmetries (Version 0.5.1)
2007
gaselect : Genetic Algorithm (GA) for Variable Selection from High-Dimensional Data (Version 1.0.25)
2015
genieclust : Fast and Robust Hierarchical Clustering with Noise Point Detection (Version 1.2.0)
2020
geoFourierFDA : Ordinary Functional Kriging Using Fourier Smoothing and Gaussian Quadrature (Version 0.1.0)
2021
geocmeans : Implementing Methods for Spatial Fuzzy Unsupervised Classification (Version 0.3.4)
2021
ggbrain : Create Images of Volumetric Brain Data in NIfTI Format Using 'ggplot2' Syntax (Version 0.9.1)
2022
ggrepel : Automatically Position Non-Overlapping Text Labels with 'ggplot2' (Version 0.9.6)
2016
gigg : Group Inverse-Gamma Gamma Shrinkage for Sparse Regression with Grouping Structure (Version 0.2.1)
2021
giniVarCI : Gini Indices, Variances and Confidence Intervals for Finite and Infinite Populations (Version 0.0.1-3)
2024
glcm : Calculate Textures from Grey-Level Co-Occurrence Matrices (GLCMs) (Version 1.6.6)
2014
glmmLasso : Variable Selection for Generalized Linear Mixed Models by L1-Penalized Estimation (Version 1.6.3)
2011
glmmPen : High Dimensional Penalized Generalized Linear Mixed Models (pGLMM) (Version 1.5.4.8)
2022
glmmfields : Generalized Linear Mixed Models with Robust Random Fields for Spatiotemporal Modeling (Version 0.1.8)
2018
glmmrOptim : Approximate Optimal Experimental Designs Using Generalised Linear Mixed Models (Version 0.3.6)
2023
gmtFD : General Multiple Tests for Univariate and Multivariate Functional Data (Version 0.1.0)
2024
gmwmx : Estimate Functional and Stochastic Parameters of Linear Models with Correlated Residuals (Version 1.0.3)
2022
gravmagsubs : Gravitational and Magnetic Attraction of 3-D Vertical Rectangular Prisms (Version 1.0.1)
2023
greed : Clustering and Model Selection with the Integrated Classification Likelihood (Version 0.6.2)
2021
greeks : Sensitivities of Prices of Financial Options and Implied Volatilities (Version 1.5.1)
2021
groupedSurv : Efficient Estimation of Grouped Survival Models Using the Exact Likelihood Function (Version 1.0.5.1)
2018
growfunctions : Bayesian Non-Parametric Dependent Models for Time-Indexed Functional Data (Version 0.17)
2014
grpCox : Penalized Cox Model for High-Dimensional Data with Grouped Predictors (Version 1.0.2)
2020
gsaot : Compute Global Sensitivity Analysis Indices Using Optimal Transport (Version 1.1.1)
2025
gyro : Hyperbolic Geometry (Version 1.4.0)
2022
habCluster : Detecting Spatial Clustering Based on Connection Cost Between Grids (Version 1.0.5)
2022
hdbinseg : Change-Point Analysis of High-Dimensional Time Series via Binary Segmentation (Version 1.0.3)
2018
hdbm : High Dimensional Bayesian Mediation Analysis (Version 0.9.0)
2019
hermiter : Efficient Sequential and Batch Estimation of Univariate and Bivariate Probability Density Functions and Cumulative Distribution Functions along with Quantiles (Univariate) and Nonparametric Correlation (Bivariate) (Version 2.3.1)
2020
hetGP : Heteroskedastic Gaussian Process Modeling and Design under Replication (Version 1.1.8)
2017
hkevp : Spatial Extreme Value Analysis with the Hierarchical Model of Reich and Shaby (2012) (Version 1.1.6)
2016
hommel : Methods for Closed Testing with Simes Inequality, in Particular Hommel's Method (Version 1.8)
2017
hopit : Hierarchical Ordered Probit Models with Application to Reporting Heterogeneity (Version 0.11.6)
2019
hsphase : Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data (Version 2.0.4)
2013
hydrotoolbox : Hydrological Tools for Handling Hydro-Meteorological Data Records (Version 1.1.2)
2021
hyperSpec : Work with Hyperspectral Data, i.e. Spectra + Meta Information (Spatial, Time, Concentration, ...) (Version 0.100.3)
2009
hypervolume : High Dimensional Geometry, Set Operations, Projection, and Inference Using Kernel Density Estimation, Support Vector Machines, and Convex Hulls (Version 3.1.6)
2013
iClusterVB : Fast Integrative Clustering and Feature Selection for High Dimensional Data (Version 0.1.4)
2024
iNEXT.3D : Interpolation and Extrapolation for Three Dimensions of Biodiversity (Version 1.0.12)
2024
ibmcraftr : Toolkits to Develop Individual-Based Models in Infectious Disease (Version 1.0.0)
2016
icensmis : Study Design and Data Analysis in the Presence of Error-Prone Diagnostic Tests and Self-Reported Outcomes (Version 1.5.0)
2012
icosa : Global Triangular and Penta-Hexagonal Grids Based on Tessellated Icosahedra (Version 0.12.0)
2017
idem : Inference in Randomized Controlled Trials with Death and Missingness (Version 5.2)
2016
image.ContourDetector : Implementation of the Unsupervised Smooth Contour Line Detection for Images (Version 0.1.2)
2020
image.textlinedetector : Segment Images in Text Lines and Words (Version 0.2.3)
2020
imagine : IMAGing engINEs, Tools for Application of Image Filters to Data Matrices (Version 2.1.3)
2016
immunarch : Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design in R (Version 0.10.3)
2020
indelmiss : Insertion Deletion Analysis While Accounting for Possible Missing Data (Version 1.0.10)
2016
invgamstochvol : Obtains the Log Likelihood for an Inverse Gamma Stochastic Volatility Model (Version 1.0.0)
2023
jaccard : Test Similarity Between Binary Data using Jaccard/Tanimoto Coefficients (Version 0.1.0)
2018
jackalope : A Swift, Versatile Phylogenomic and High-Throughput Sequencing Simulator (Version 1.1.6)
2019
jiebaR : Chinese Text Segmentation (Version 0.11.1)
2014
jmatrix : Read from/Write to Disk Matrices with any Data Type in a Binary Format (Version 1.5.2)
2022
jmotif : Time Series Analysis Toolkit Based on Symbolic Aggregate Discretization, i.e. SAX (Version 1.2.1)
2015
joineRML : Joint Modelling of Multivariate Longitudinal Data and Time-to-Event Outcomes (Version 0.4.7)
2016
jsonStrings : Manipulation of JSON Strings (Version 2.1.1)
2021
jsonify : Convert Between 'R' Objects and Javascript Object Notation (JSON) (Version 1.2.3)
2018
kanjistat : A Statistical Framework for the Analysis of Japanese Kanji Characters (Version 0.14.2)
2023
kmer : Fast K-Mer Counting and Clustering for Biological Sequence Analysis (Version 1.1.2)
2018
l0ara : Sparse Generalized Linear Model with L0 Approximation for Feature Selection (Version 0.1.6)
2016
later : Utilities for Scheduling Functions to Execute Later with Event Loops (Version 1.4.5)
2017
lbfgsb3c : Limited Memory BFGS Minimizer with Bounds on Parameters with optim() 'C' Interface (Version 2024-3.5)
2018
ldmppr : Estimate and Simulate from Location Dependent Marked Point Processes (Version 1.1.1)
2024
lidR : Airborne LiDAR Data Manipulation and Visualization for Forestry Applications (Version 4.2.3)
2016
linconGaussR : Sampling Multivariate Normal Distribution under Linear Constraints (Version 0.1)
2021
linelistBayes : Bayesian Analysis of Epidemic Data Using Line List and Case Count Approaches (Version 1.0)
2024
lodr : Linear Model Fitting with LOD Covariates (Version 1.0)
2020
logKDE : Computing Log-Transformed Kernel Density Estimates for Positive Data (Version 0.3.3)
2018
lrstat : Power and Sample Size Calculation for Non-Proportional Hazards and Beyond (Version 0.2.15)
2021
lsbclust : Least-Squares Bilinear Clustering for Three-Way Data (Version 1.1)
2015
lslx : Semi-Confirmatory Structural Equation Modeling via Penalized Likelihood or Least Squares (Version 0.6.11)
2017
lvmcomp : Stochastic EM Algorithms for Latent Variable Models with a High-Dimensional Latent Space (Version 1.2)
2018
mDAG : Inferring Causal Network from Mixed Observational Data Using a Directed Acyclic Graph (Version 1.2.3)
2019
marble : Robust Marginal Bayesian Variable Selection for Gene-Environment Interactions (Version 0.0.3)
2023
marginaleffects : Predictions, Comparisons, Slopes, Marginal Means, and Hypothesis Tests (Version 0.31.0)
2021
markovmix : Mixture of Markov Chains with Support of Higher Orders and Multiple Sequences (Version 0.1.3)
2023
mbbefd : Maxwell Boltzmann Bose Einstein Fermi Dirac Distribution and Destruction Rate Modelling (Version 0.8.14)
2013
mccca : Visualizing Class Specific Heterogeneous Tendencies in Categorical Data (Version 1.1.0.1)
2022
mcemGLM : Maximum Likelihood Estimation for Generalized Linear Mixed Models (Version 1.1.3)
2015
mcga : Machine Coded Genetic Algorithms for Real-Valued Optimization Problems (Version 3.0.9)
2010
meshed : Bayesian Regression with Meshed Gaussian Processes (Version 0.2.3)
2021
metaBMA : Bayesian Model Averaging for Random and Fixed Effects Meta-Analysis (Version 0.6.9)
2017
metaRange : Framework to Build Mechanistic and Metabolic Constrained Species Distribution Models (Version 1.1.4)
2023
metacart : Meta-CART: A Flexible Approach to Identify Moderators in Meta-Analysis (Version 3.0.4)
2017
metacoder : Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data (Version 0.3.8)
2016
metadynminer : Tools to Read, Analyze and Visualize Metadynamics HILLS Files from 'Plumed' (Version 0.1.7)
2018
metadynminer3d : Tools to Read, Analyze and Visualize Metadynamics 3D HILLS Files from 'Plumed' (Version 0.0.2)
2019
metafolio : Metapopulation Simulations for Conserving Salmon Through Portfolio Optimization (Version 0.1.2)
2014
mhazard : Nonparametric and Semiparametric Methods for Multivariate Failure Time Data (Version 0.2.3)
2020
miceadds : Some Additional Multiple Imputation Functions, Especially for 'mice' (Version 3.18-36)
2014
microclass : Methods for Taxonomic Classification of Prokaryotes (Version 1.2)
2016
microsimulation : Discrete Event Simulation in R and C++, with Tools for Cost-Effectiveness Analysis (Version 1.4.5)
2021
miic : Learning Causal or Non-Causal Graphical Models Using Information Theory (Version 2.0.3)
2017
milorGWAS : Mixed Logistic Regression for Genome-Wide Analysis Studies (GWAS) (Version 0.7.1)
2020
minMSE : Implementation of the minMSE Treatment Assignment Method for One or Multiple Treatment Groups (Version 0.5.1)
2019
minerva : Maximal Information-Based Nonparametric Exploration for Variable Analysis (Version 1.5.10)
2012
minqa : Derivative-Free Optimization Algorithms by Quadratic Approximation (Version 1.2.8)
2010
mirtCAT : Computerized Adaptive Testing with Multidimensional Item Response Theory (Version 1.14)
2014
mirtjml : Joint Maximum Likelihood Estimation for High-Dimensional Item Factor Analysis (Version 1.4.0)
2018
miscset : Miscellaneous Tools Set (Version 1.1.0)
2014
missDeaths : Simulating and Analyzing Time to Event Data in the Presence of Population Mortality (Version 2.8)
2015
mixedCCA : Sparse Canonical Correlation Analysis for High-Dimensional Mixed Data (Version 1.6.3)
2020
mixl : Simulated Maximum Likelihood Estimation of Mixed Logit Models for Large Datasets (Version 1.3.5)
2019
mixsqp : Sequential Quadratic Programming for Fast Maximum-Likelihood Estimation of Mixture Proportions (Version 0.3-54)
2018
mmcif : Mixed Multivariate Cumulative Incidence Functions (Version 0.1.1)
2022
mnis : Easy Downloading Capabilities for the Members' Name Information Service (Version 0.3.1)
2016
mobsim : Spatial Simulation and Scale-Dependent Analysis of Biodiversity Changes (Version 0.3.2)
2017
modsem : Latent Interaction (and Moderation) Analysis in Structural Equation Models (SEM) (Version 1.0.15)
2024
momentuHMM : Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models (Version 1.5.8)
2017
mrMLM.GUI : Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for Genome-Wide Association Study with Graphical User Interface (Version 4.0.2)
2018
mrfDepth : Depth Measures in Multivariate, Regression and Functional Settings (Version 1.0.17)
2017
mrregression : Regression Analysis for Very Large Data Sets via Merge and Reduce (Version 1.0.0)
2020
msde : Bayesian Inference for Multivariate Stochastic Differential Equations (Version 1.0.5)
2017
mssearchr : Library Search Against Electron Ionization Mass Spectral Databases (Version 0.2.0)
2024
mulea : Enrichment Analysis Using Multiple Ontologies and False Discovery Rate (Version 1.1.1)
2024
multgee : GEE Solver for Correlated Nominal or Ordinal Multinomial Responses (Version 1.9.0)
2012
multilevLCA : Estimates and Plots Single-Level and Multilevel Latent Class Models (Version 2.1.2)
2023
multinomialLogitMix : Clustering Multinomial Count Data under the Presence of Covariates (Version 1.1)
2022
multinomineq : Bayesian Inference for Multinomial Models with Inequality Constraints (Version 0.2.6)
2019
multipleDL : Addressing Detection Limits by Cumulative Probability Models (CPMs) (Version 1.0.0)
2023
multivar : Penalized Estimation of Multiple-Subject Vector Autoregressive (multi-VAR) Models (Version 1.1.0)
2020
mvrsquared : Compute the Coefficient of Determination for Vector or Matrix Outcomes (Version 0.1.5)
2020
mwcsr : Solvers for Maximum Weight Connected Subgraph Problem and Its Variants (Version 0.1.10)
2021
n1qn1 : Port of the 'Scilab' 'n1qn1' Module for Unconstrained BFGS Optimization (Version 6.0.1-12)
2017
nabor : Wraps 'libnabo', a Fast K Nearest Neighbour Library for Low Dimensions (Version 0.5.0)
2014
navigation : Analyze the Impact of Sensor Error Modelling on Navigation Performance (Version 0.0.1)
2023
ncpen : Unified Algorithm for Non-convex Penalized Estimation for Generalized Linear Models (Version 1.0.0)
2018
nebula : Negative Binomial Mixed Models Using Large-Sample Approximation for Differential Expression Analysis of ScRNA-Seq Data (Version 1.5.6)
2022
netcmc : Spatio-Network Generalised Linear Mixed Models for Areal Unit and Network Data (Version 1.0.2)
2022
ngspatial : Fitting the Centered Autologistic and Sparse Spatial Generalized Linear Mixed Models for Areal Data (Version 1.2-2)
2012
nlmixr2est : Nonlinear Mixed Effects Models in Population PK/PD, Estimation Routines (Version 5.0.2)
2022
nlmixr2extra : Nonlinear Mixed Effects Models in Population PK/PD, Extra Support Functions (Version 5.0.0)
2022
nn2poly : Neural Network Weights Transformation into Polynomial Coefficients (Version 0.1.3)
2024
nnlib2Rcpp : A Tool for Creating Custom Neural Networks in C++ and using Them in R (Version 0.2.9)
2020
noncompliance : Causal Inference in the Presence of Treatment Noncompliance Under the Binary Instrumental Variable Model (Version 0.2.2)
2016
nprobust : Nonparametric Robust Estimation and Inference Methods using Local Polynomial Regression and Kernel Density Estimation (Version 0.5.0)
2016
numberofalleles : Compute the Probability Distribution of the Number of Alleles in a DNA Mixture (Version 1.0.1)
2022
ohoegdm : Ordinal Higher-Order Exploratory General Diagnostic Model for Polytomous Data (Version 0.1.1)
2022
opera : Online Prediction by Expert Aggregation (Version 1.2.0)
2016
optimization : Flexible Optimization of Complex Loss Functions with State and Parameter Space Constraints (Version 1.0-9)
2016
ordinalForest : Ordinal Forests: Prediction and Variable Ranking with Ordinal Target Variables (Version 2.4-4)
2017
orthoDr : Semi-Parametric Dimension Reduction Models Using Orthogonality Constrained Optimization (Version 0.6.8)
2017
osmdata : Import 'OpenStreetMap' Data as Simple Features or Spatial Objects (Version 0.3.0)
2017
outbreaker2 : Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data (Version 1.1.4)
2017
pPCA : Partial Principal Component Analysis of Partitioned Large Sparse Matrices (Version 1.1)
2024
pacotest : Testing for Partial Copulas and the Simplifying Assumption in Vine Copulas (Version 0.4.3)
2017
paropt : Parameter Optimizing of ODE-Systems (Version 0.3.3)
2020
patternplot : Versatile Pie Charts, Ring Charts, Bar Charts and Box Plots using Patterns, Colors and Images (Version 2.0.0)
2016
pcaone : Fast and Accurate Randomized Singular Value Decomposition Algorithms with 'PCAone' (Version 1.1.0)
2022
penAFT : Fit the Semiparametric Accelerated Failure Time Model with Elastic Net and Sparse Group Lasso Penalties (Version 0.3.2)
2022
penalized : L1 (Lasso and Fused Lasso) and L2 (Ridge) Penalized Estimation in GLMs and in the Cox Model (Version 0.9-53)
2007
permuco : Permutation Tests for Regression, (Repeated Measures) ANOVA/ANCOVA and Comparison of Signals (Version 1.1.3)
2018
pgKDEsphere : Parametrically Guided Kernel Density Estimator for Spherical Data (Version 1.0.2)
2024
pgee.mixed : Penalized Generalized Estimating Equations for Bivariate Mixed Outcomes (Version 0.1.0)
2016
philentropy : Similarity and Distance Quantification Between Probability Functions (Version 0.10.0)
2017
piqp : R Interface to Proximal Interior Point Quadratic Programming Solver (Version 0.2.2)
2023
plac : A Pairwise Likelihood Augmented Cox Estimator for Left-Truncated Data (Version 0.1.3)
2016
plotSEMM : Graphing Nonlinear Relations Among Latent Variables from Structural Equation Mixture Models (Version 2.4)
2012
pmartR : Panomics Marketplace - Quality Control and Statistical Analysis for Panomics Data (Version 2.5.1)
2023
policytree : Policy Learning via Doubly Robust Empirical Welfare Maximization over Trees (Version 1.2.3)
2020
polyRAD : Genotype Calling with Uncertainty from Sequencing Data in Polyploids and Diploids (Version 2.0.0)
2018
pomdp : Infrastructure for Partially Observable Markov Decision Processes (POMDP) (Version 1.2.5)
2018
poolfstat : Computing f-Statistics and Building Admixture Graphs Based on Allele Count or Pool-Seq Read Count Data (Version 3.0.0)
2018
ppgmmga : Projection Pursuit Based on Gaussian Mixtures and Evolutionary Algorithms (Version 1.3.1)
2018
precrec : Calculate Accurate Precision-Recall and ROC (Receiver Operator Characteristics) Curves (Version 0.14.5)
2015
predkmeans : Covariate Adaptive Clustering (Version 0.1.1)
2017
prospectr : Miscellaneous Functions for Processing and Sample Selection of Spectroscopic Data (Version 0.2.8)
2013
protViz : Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics (Version 0.7.9)
2012
psd : Adaptive, Sine-Multitaper Power Spectral Density and Cross Spectrum Estimation (Version 2.1.2)
2013
pseudoCure : A Pseudo-Observations Approach for Analyzing Survival Data with a Cure Fraction (Version 1.0.0)
2025
qfratio : Moments and Distributions of Ratios of Quadratic Forms Using Recursion (Version 1.1.1)
2023
qgraph : Graph Plotting Methods, Psychometric Data Visualization and Graphical Model Estimation (Version 1.9.8)
2011
qris : Quantile Regression Model for Residual Lifetime Using an Induced Smoothing Approach (Version 1.1.1)
2022
rPBK : Inference and Prediction of Generic Physiologically-Based Kinetic Models (Version 0.2.5)
2022
raceland : Pattern-Based Zoneless Method for Analysis and Visualization of Racial Topography (Version 1.2.2)
2019
rags2ridges : Ridge Estimation of Precision Matrices from High-Dimensional Data (Version 2.2.9)
2014
randomUniformForest : Random Uniform Forests for Classification, Regression and Unsupervised Learning (Version 1.1.6)
2014
rangeBuilder : Occurrence Filtering, Geographic Standardization and Generation of Species Range Polygons (Version 2.2)
2016
ranktreeEnsemble : Ensemble Models of Rank-Based Trees with Extracted Decision Rules (Version 0.24)
2023
rare : Linear Model with Tree-Based Lasso Regularization for Rare Features (Version 0.1.2)
2018
ravetools : Signal and Image Processing Toolbox for Analyzing Intracranial Electroencephalography Data (Version 0.2.4)
2022
rcbayes : Estimate Rogers-Castro Migration Age Schedules with Bayesian Models (Version 0.3.0)
2021
readsparse : Read and Write Sparse Matrices in 'SVMLight' and 'LibSVM' Formats (Version 0.1.5-8)
2021
remstimate : Optimization Frameworks for Tie-Oriented and Actor-Oriented Relational Event Models (Version 2.3.14)
2023
reservr : Fit Distributions and Neural Networks to Censored and Truncated Data (Version 0.0.3)
2022
resultant : Utilities for Multivariate Polynomials with Rational Coefficients (Version 1.0.0)
2024
rflashtext : FlashText Algorithm for Finding and Replacing Words (Version 1.0.0)
2022
riskRegression : Risk Regression Models and Prediction Scores for Survival Analysis with Competing Risks (Version 2025.09.17)
2011
rjaf : Regularized Joint Assignment Forest with Treatment Arm Clustering (Version 0.1.3)
2024
rlas : Read and Write 'las' and 'laz' Binary File Formats Used for Remote Sensing Data (Version 1.8.2)
2016
rlfsm : Simulations and Statistical Inference for Linear Fractional Stable Motions (Version 1.1.2)
2018
rlme : Rank-Based Estimation and Prediction in Random Effects Nested Models (Version 0.5)
2013
rminizinc : R Interface to 'MiniZinc' (Version 0.0.8)
2020
rnndescent : Nearest Neighbor Descent Method for Approximate Nearest Neighbors (Version 0.1.8)
2023
roben : Robust Bayesian Variable Selection for Gene-Environment Interactions (Version 0.1.2)
2020
robustcov : Collection of Robust Covariance and (Sparse) Precision Matrix Estimators (Version 0.1)
2021
rocTree : Receiver Operating Characteristic (ROC)-Guided Classification and Survival Tree (Version 1.1.1)
2019
rrum : Bayesian Estimation of the Reduced Reparameterized Unified Model with Gibbs Sampling (Version 0.2.2)
2019
rsvddpd : Robust Singular Value Decomposition using Density Power Divergence (Version 1.0.1)
2021
rubias : Bayesian Inference from the Conditional Genetic Stock Identification Model (Version 0.3.4)
2018
ruimtehol : Learn Text 'Embeddings' with 'Starspace' (Version 0.3.2)
2019
rvMF : Fast Generation of von Mises-Fisher Distributed Pseudo-Random Vectors (Version 0.1.0)
2023
samurais : Statistical Models for the Unsupervised Segmentation of Time-Series ('SaMUraiS') (Version 0.1.0)
2019
satdad : Sensitivity Analysis Tools for Dependence and Asymptotic Dependence (Version 1.1)
2023
saturnin : Spanning Trees Used for Network Inference (Version 1.1.1)
2015
sbmSDP : Semidefinite Programming for Fitting Block Models of Equal Block Sizes (Version 0.2)
2015
scalablebayesm : Distributed Markov Chain Monte Carlo for Bayesian Inference in Marketing (Version 0.2)
2025
scellpam : Applying Partitioning Around Medoids to Single Cell Data with High Number of Cells (Version 1.4.6.2)
2022
scoringRules : Scoring Rules for Parametric and Simulated Distribution Forecasts (Version 1.1.3)
2016
scregclust : Reconstructing the Regulatory Programs of Target Genes in scRNA-Seq Data (Version 0.2.2)
2024
sdcMicro : Statistical Disclosure Control Methods for Anonymization of Data and Risk Estimation (Version 5.8.0)
2007
secsse : Several Examined and Concealed States-Dependent Speciation and Extinction (Version 3.5.0)
2019
secure : Sequential Co-Sparse Factor Regression (Version 0.6)
2017
segMGarch : Multiple Change-Point Detection for High-Dimensional GARCH Processes (Version 1.3)
2018
semicmprskcoxmsm : Use Inverse Probability Weighting to Estimate Treatment Effect for Semi Competing Risks Data (Version 0.2.0)
2022
sensitivity : Global Sensitivity Analysis of Model Outputs and Importance Measures (Version 1.30.2)
2006
sentometrics : An Integrated Framework for Textual Sentiment Time Series Aggregation and Prediction (Version 1.0.1)
2017
seqHMM : Mixture Hidden Markov Models for Social Sequence Data and Other Multivariate, Multichannel Categorical Time Series (Version 2.1.0)
2015
sffdr : Surrogate Functional False Discovery Rates for Genome-Wide Association Studies (Version 1.0.0)
2024
sgdGMF : Estimation of Generalized Matrix Factorization Models via Stochastic Gradient Descent (Version 1.0.1)
2025
shrinkDSM : Efficient Bayesian Inference for Dynamic Survival Models with Shrinkage (Version 1.0.0)
2021
shrinkTVP : Efficient Bayesian Inference for Time-Varying Parameter Models with Shrinkage (Version 3.1.1)
2019
shrinkTVPVAR : Efficient Bayesian Inference for TVP-VAR-SV Models with Shrinkage (Version 1.0.1)
2024
sigminer : Extract, Analyze and Visualize Mutational Signatures for Genomic Variations (Version 2.3.1)
2019
simRestore : Simulate the Effect of Management Policies on Restoration Efforts (Version 1.1.5)
2023
sitmo : Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files (Version 2.0.2)
2016
sits : Satellite Image Time Series Analysis for Earth Observation Data Cubes (Version 1.5.4)
2022
skpr : Design of Experiments Suite: Generate and Evaluate Optimal Designs (Version 1.9.2)
2017
slfm : Fitting a Bayesian Sparse Latent Factor Model in Gene Expression Analysis (Version 1.0.2)
2014
smarter : A Collection of Modified R Functions to Make Basic Coding More Convenient (Version 1.0.1)
2025
sorcering : Soil Organic Carbon and CN Ratio Driven Nitrogen Modelling Framework (Version 1.2.1)
2021
spBPS : Bayesian Predictive Stacking for Scalable Geospatial Transfer Learning (Version 0.0-4)
2024
spBayesSurv : Bayesian Modeling and Analysis of Spatially Correlated Survival Data (Version 1.1.9)
2014
sparsereg : Sparse Bayesian Models for Regression, Subgroup Analysis, and Panel Data (Version 1.2)
2015
sparsevb : Spike-and-Slab Variational Bayes for Linear and Logistic Regression (Version 0.1.1)
2021
spinBayes : Semi-Parametric Gene-Environment Interaction via Bayesian Variable Selection (Version 0.2.2)
2019
spreadr : Simulating Spreading Activation in a Network (Version 0.2.0)
2018
springer : Sparse Group Variable Selection for Gene-Environment Interactions in the Longitudinal Study (Version 0.1.9)
2020
ssMousetrack : Bayesian State-Space Modeling of Mouse-Tracking Experiments via Stan (Version 1.1.7)
2018
sstvars : Toolkit for Reduced Form and Structural Smooth Transition Vector Autoregressive Models (Version 1.2.2)
2024
starma : Modelling Space Time AutoRegressive Moving Average (STARMA) Processes (Version 1.3)
2015
stcpR6 : Sequential Test and Change-Point Detection Algorithms Based on E-Values / E-Detectors (Version 0.9.8)
2024
steadyICA : ICA and Tests of Independence via Multivariate Distance Covariance (Version 1.0.1)
2015
stochvol : Efficient Bayesian Inference for Stochastic Volatility (SV) Models (Version 3.2.8)
2013
stosim : Stochastic Simulator for Reliability Modeling of Repairable Systems (Version 0.0.15)
2014
stpm : Stochastic Process Model for Analysis of Longitudinal and Time-to-Event Outcomes (Version 1.7.12)
2016
sundialr : An Interface to 'SUNDIALS' Ordinary Differential Equation (ODE) Solvers (Version 0.1.6.2)
2018
superml : Build Machine Learning Models Like Using Python's Scikit-Learn Library in R (Version 0.5.7)
2018
surtvep : Cox Non-Proportional Hazards Model with Time-Varying Coefficients (Version 1.0.0)
2023
survPen : Multidimensional Penalized Splines for (Excess) Hazard Models, Relative Mortality Ratio Models and Marginal Intensity Models (Version 2.0.2)
2019
surveysd : Survey Standard Error Estimation for Cumulated Estimates and their Differences in Complex Panel Designs (Version 2.0.0)
2019
symbolicQspray : Multivariate Polynomials with Symbolic Parameters in their Coefficients (Version 1.1.0)
2024
synlik : Synthetic Likelihood Methods for Intractable Likelihoods (Version 0.1.7)
2014
tabulate : Pretty Console Output for Tables (Version 0.1.0)
2022
tame : Timing, Anatomical, Therapeutic and Chemical Based Medication Clustering (Version 0.2.1)
2023
tdROC : Nonparametric Estimation of Time-Dependent ROC, Brier Score, and Survival Difference from Right Censored Time-to-Event Data with or without Competing Risks (Version 2.0)
2016
tergmLite : Fast Simulation of Simple Temporal Exponential Random Graph Models (Version 2.6.1)
2020
thunder : Computation and Visualisation of Atmospheric Convective Parameters (Version 1.1.5)
2021
tiledb : Modern Database Engine for Complex Data Based on Multi-Dimensional Arrays (Version 0.33.0)
2020
tipsae : Tools for Handling Indices and Proportions in Small Area Estimation (Version 1.0.3)
2022
tlars : The T-LARS Algorithm: Early-Terminated Forward Variable Selection (Version 1.0.1)
2022
tree.interpreter : Random Forest Prediction Decomposition and Feature Importance Measure (Version 0.1.3)
2019
treenomial : Comparison of Trees using a Tree Defining Polynomial (Version 1.1.4)
2019
treeshap : Compute SHAP Values for Your Tree-Based Models Using the 'TreeSHAP' Algorithm (Version 0.3.1)
2023
truncnormbayes : Estimates Moments for a Truncated Normal Distribution using 'Stan' (Version 0.0.3)
2022
trustOptim : Trust Region Optimization for Nonlinear Functions with Sparse Hessians (Version 0.8.7.4)
2012
tsBSS : Blind Source Separation and Supervised Dimension Reduction for Time Series (Version 1.0.0)
2015
tsnet : Fitting, Comparing, and Visualizing Networks Based on Time Series Data (Version 0.2.0)
2024
twangContinuous : Toolkit for Weighting and Analysis of Nonequivalent Groups - Continuous Exposures (Version 1.0.0)
2021
udpipe : Tokenization, Parts of Speech Tagging, Lemmatization and Dependency Parsing with the 'UDPipe' 'NLP' Toolkit (Version 0.8.15)
2017
ulid : Generate Universally Unique 'Lexicographically' 'Sortable' Identifiers (Version 0.4.0)
2019
ungroup : Penalized Composite Link Model for Efficient Estimation of Smooth Distributions from Coarsely Binned Data (Version 1.4.4)
2018
uwot : The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality Reduction (Version 0.2.4)
2019
varbvs : Large-Scale Bayesian Variable Selection Using Variational Methods (Version 2.6-10)
2012
visit : Vaccine Phase I Design with Simultaneous Evaluation of Immunogenicity and Toxicity (Version 2.2)
2019
walker : Bayesian Generalized Linear Models with Time-Varying Coefficients (Version 1.0.10)
2017
windfarmGA : Genetic Algorithm for Wind Farm Layout Optimization (Version 4.0.0)
2017
wkutils : Utilities for Well-Known Geometry Vectors (Version 0.1.3)
2020
wru : Who are You? Bayesian Prediction of Racial Category Using Surname, First Name, Middle Name, and Geolocation (Version 3.0.3)
2015
bayesAB : Fast Bayesian Methods for AB Testing (Version 1.1.3)
2016
benchr : High Precise Measurement of R Expressions Execution Time (Version 0.2.5)
2016
coreCollection : Core Collection (Version 0.9.5)
2022
gppm : Gaussian Process Panel Modeling (Version 0.2.0)
2018
pcIRT : IRT Models for Polytomous and Continuous Item Responses (Version 0.2.4)
2014
MDEI : Implementing the Method of Direct Estimation and Inference (Version 1.0)
2023
autoRasch : Semi-Automated Rasch Analysis (Version 0.2.2)
2022
bayeslm
Priors : (Version )
0
covdepGE : Covariate Dependent Graph Estimation (Version 1.0.1)
2022
fipp : Induced Priors in Bayesian Mixture Models (Version 1.0.0)
2021
fmf : Fast Class Noise Detector with Multi-Factor-Based Learning (Version 1.1.1)
2020
meteorits : Mixture-of-Experts Modeling for Complex Non-Normal Distributions (Version 0.1.1)
2019
mgss : A Matrix-Free Multigrid Preconditioner for Spline Smoothing (Version 1.2)
2021
netcontrol : Control Theory Methods for Networks (Version 0.1)
2020
registr : Curve Registration for Exponential Family Functional Data (Version 2.2.1)
2020
sasfunclust : Sparse and Smooth Functional Clustering (Version 1.0.0)
2021
sbo : Text Prediction via Stupid Back-Off N-Gram Models (Version 0.5.0)
2020
DMQ : Dynamic Multiple Quantile (DMQ) Model (Version 0.1.2)
2023
EstMix : Tumor Clones Percentage Estimations (Version 1.0.1)
2018
KODAMA : Knowledge Discovery by Accuracy Maximization (Version 3.0)
2014
MMVBVS : Missing Multivariate Bayesian Variable Selection (Version 0.8.0)
2019
SBCK : Statistical Bias Correction Kit (Version 1.0.0)
2021
ast2ast : Translates an R Function to a C++ Function (Version 0.3.2)
2022
fwsim : Fisher-Wright Population Simulation (Version 0.3.4)
2012
gapfill : Fill Missing Values in Satellite Data (Version 0.9.6-1)
2016
gpuR : GPU Functions for R Objects (Version 2.0.6)
2015
nse : Numerical Standard Errors Computation in R (Version 1.22)
2017
skm : Selective k-Means (Version 0.1.5.4)
2017
IOHanalyzer : Data Analysis Part of 'IOHprofiler' (Version 0.1.8.17)
2019
beanz : Bayesian Analysis of Heterogeneous Treatment Effect (Version 3.1)
2016
isotracer : Isotopic Tracer Analysis Using MCMC (Version 1.1.8)
2021
qtlpoly : Random-Effect Multiple QTL Mapping in Autopolyploids (Version 0.2.4)
2021
ARCokrig : Autoregressive Cokriging Models for Multifidelity Codes (Version 0.1.3)
2020
BCT : Bayesian Context Trees for Discrete Time Series (Version 1.2)
2020
BOSSreg : Best Orthogonalized Subset Selection (BOSS) (Version 0.2.0)
2019
BayesRGMM : Bayesian Robust Generalized Mixed Models for Longitudinal Data (Version 2.2)
2021
BinaryDosage : Creates, Merges, and Reads Binary Dosage Files (Version 1.0.0)
2020
CPAT : Change Point Analysis Tests (Version 0.1.0)
2018
CircSpaceTime : Spatial and Spatio-Temporal Bayesian Model for Circular Data (Version 0.9.0)
2019
CoOL : Causes of Outcome Learning (Version 1.1.2)
2021
CodeDepends
Comprehension : (Version )
0
DGM : Dynamic Graphical Models (Version 1.7.4)
2018
DriftBurstHypothesis : Calculates the Test-Statistic for the Drift Burst Hypothesis (Version 0.4.0.1)
2019
DtD : Distance to Default (Version 0.2.2)
2018
FIT : Transcriptomic Dynamics Models in Field Conditions (Version 0.0.6)
2016
FRESHD : Fast Robust Estimation of Signals in Heterogeneous Data (Version 1.0)
2022
FSInteract : Fast Searches for Interactions (Version 0.1.2)
2015
FarmTest : Factor-Adjusted Robust Multiple Testing (Version 2.2.0)
2017
GAS : Generalized Autoregressive Score Models (Version 0.3.4.1)
2016
GPM
Datasets : (Version )
0
GxEScanR : Run GWAS/GWEIS Scans Using Binary Dosage Files (Version 2.0.2)
2020
HMMEsolver
Operations : (Version )
0
LassoGEE : High-Dimensional Lasso Generalized Estimating Equations (Version 1.0)
2020
LowWAFOMNX : Low WAFOM Niederreiter-Xing Sequence (Version 1.1.1)
2017
LowWAFOMSobol : Low WAFOM Sobol Sequence (Version 1.1.1)
2017
NAIR : Network Analysis of Immune Repertoire (Version 1.0.4)
2023
PLSiMCpp : Methods for Partial Linear Single Index Model (Version 1.0.4)
2021
PhenotypeSimulator
Models : (Version )
0
RcppCensSpatial : Spatial Estimation and Prediction for Censored/Missing Responses (Version 0.3.0)
2021
Ryacas0 : Legacy 'Ryacas' (Interface to 'Yacas' Computer Algebra System) (Version 0.4.5)
2019
SFS : Similarity-First Search Seriation Algorithm (Version 0.1.4)
2017
SMMA : Soft Maximin Estimation for Large Scale Array-Tensor Models (Version 1.0.3)
2017
SMME : Soft Maximin Estimation for Large Scale Heterogeneous Data (Version 1.1.1)
2021
SNPknock : Knockoffs for Hidden Markov Models and Genetic Data (Version 0.8.2)
2017
SpatialKWD : Spatial KWD for Large Spatial Maps (Version 0.4.1)
2021
StepSignalMargiLike : Step-Wise Signal Extraction via Marginal Likelihood (Version 2.6.0)
2017
TAG : Transformed Additive Gaussian Processes (Version 0.5.1)
2019
TransPhylo : Inference of Transmission Tree from a Dated Phylogeny (Version 1.4.5)
2020
VUROCS : Volume under the ROC Surface for Multi-Class ROC Analysis (Version 1.0)
2020
adaHuber : Adaptive Huber Estimation and Regression (Version 1.1)
2022
agtboost : Adaptive and Automatic Gradient Boosting Computations (Version 0.9.3)
2020
ahMLE : Methods for the Additive Hazard Model (Version 1.20.1)
2021
bayescopulareg : Bayesian Copula Regression (Version 0.1.3)
2020
bestridge : A Comprehensive R Package for Best Subset Selection (Version 1.0.7)
2021
biClassify : Binary Classification Using Extensions of Discriminant Analysis (Version 1.3)
2020
bmabasket : Bayesian Model Averaging for Basket Trials (Version 0.1.2)
2021
chunkR : Read Tables in Chunks (Version 1.1.1)
2018
clusterHD : Tools for Clustering High-Dimensional Data (Version 1.0.2)
2022
cmenet : Bi-Level Selection of Conditional Main Effects (Version 0.1.2)
2019
concom : Connected Components of an Undirected Graph (Version 1.0.0)
2022
covTestR : Covariance Matrix Tests (Version 0.1.4)
2017
coxrt : Cox Proportional Hazards Regression for Right-Truncated Data (Version 1.0.3)
2018
cusum
Performance : (Version )
0
dgumbel : The Gumbel Distribution Functions and Gradients (Version 1.0.1)
2020
dsmisc : Data Science Box of Pandora Miscellaneous (Version 0.3.3)
2020
fastcmh : Significant Interval Discovery with Categorical Covariates (Version 0.2.7)
2016
fasterElasticNet : An Amazing Fast Way to Fit Elastic Net (Version 1.1.2)
2018
fmerPack : Tools of Heterogeneity Pursuit via Finite Mixture Effects Model (Version 0.0-1)
2021
fourPNO : Bayesian 4 Parameter Item Response Model (Version 1.1.0)
2015
gbp : A Bin Packing Problem Solver (Version 0.1.0.4)
2017
geoFKF : Kriging Method for Spatial Functional Data (Version 0.1.1)
2020
geoFourierFDA
Quadrature : (Version )
0
gesso : Hierarchical GxE Interactions in a Regularized Regression Model (Version 1.0.2)
2021
gghilbertstrings : A Fast 'ggplot2'-Based Implementation of Hilbert Curves (Version 0.3.3)
2021
glamlasso : Penalization in Large Scale Generalized Linear Array Models (Version 3.0.1)
2015
graphkernels : Graph Kernels (Version 1.6.1)
2017
higlasso : Hierarchical Integrative Group LASSO (Version 0.9.0)
2020
iccbeta : Multilevel Model Intraclass Correlation for Slope Heterogeneity (Version 1.2.0)
2014
imbalance : Preprocessing Algorithms for Imbalanced Datasets (Version 1.0.2.1)
2017
imptree : Classification Trees with Imprecise Probabilities (Version 0.5.1)
2018
infinitefactor : Bayesian Infinite Factor Models (Version 1.0)
2020
intcensROC : AUC Estimation of Interval Censored Survival Data (Version 0.1.3)
2018
ivsacim : Structural Additive Cumulative Intensity Models with IV (Version 2.1.0)
2020
latentgraph : Graphical Models with Latent Variables (Version 1.1)
2020
lazyarray : Persistent Large Data Array with Lazy-Loading on Demand (Version 1.1.0)
2020
ldsr : Linear Dynamical System Reconstruction (Version 0.0.2)
2020
ltsspca : Sparse Principal Component Based on Least Trimmed Squares (Version 0.1.0)
2019
mined : Minimum Energy Designs (Version 1.0-3)
2018
motmot : Models of Trait Macroevolution on Trees (Version 2.1.3)
2012
penPHcure : Variable Selection in PH Cure Model with Time-Varying Covariates (Version 1.0.2)
2019
pgsc : Computes Powell's Generalized Synthetic Control Estimator (Version 1.0.0)
2018
qpmadr : Interface to the 'qpmad' Quadratic Programming Solver (Version 1.1.0-0)
2020
relliptical : The Truncated Elliptical Family of Distributions (Version 1.3.0)
2021
sdpdth : M-Estimator for Threshold Spatial Dynamic Panel Data Model (Version 0.2)
2021
spFW : Hierarchical Spatial Finlay-Wilkinson Model (Version 0.1.0)
2022
sparkwarc : Load WARC Files into Apache Spark (Version 0.1.6)
2017
sparseHessianFD : Numerical Estimation of Sparse Hessians (Version 0.3.3.7)
2012
spectre : Predict Regional Community Composition (Version 1.0.5)
2021
sprintr : Sparse Reluctant Interaction Modeling (Version 0.9.0)
2019
strider : Strided Iterator and Range (Version 1.3)
2017
surbayes : Bayesian Analysis of Seemingly Unrelated Regression Models (Version 0.1.2)
2020
survival.svb : Fit High-Dimensional Proportional Hazards Models (Version 0.0-2)
2021
unine : Unine Light Stemmer (Version 0.2.0)
2019
SeqDetect : Sequence and Latent Process Detector (Version 1.0.7)
2020
bigMap : Big Data Mapping (Version 2.3.1)
2019
hBayesDM : Hierarchical Bayesian Modeling of Decision-Making Tasks (Version 1.2.1)
2016
heuristicsmineR : Discovery of Process Models with the Heuristics Miner (Version 0.3.0)
2019
spBFA : Spatial Bayesian Factor Analysis (Version 1.5.0)
2019
BNPmix : Bayesian Nonparametric Mixture Models (Version 1.1.0)
2019
DatAssim : Data Assimilation (Version 1.0)
2017
EigenR : Complex Matrix Algebra with 'Eigen' (Version 1.3.0)
2020
GPCERF
Curves : (Version )
0
GofKmt : Khmaladze Martingale Transformation Goodness-of-Fit Test (Version 2.3.1)
2016
HDJM : Penalized High-Dimensional Joint Model (Version 0.1.0)
2023
HypergeoMat : Hypergeometric Function of a Matrix Argument (Version 4.0.3)
2019
ICRanks : Simultaneous Confidence Intervals for Ranks (Version 3.2)
2017
MPCR : Multi- And Mixed-Precision Computations (Version 1.1.4)
2024
MR.RGM : Fitting Multivariate Bidirectional Mendelian Randomization Networks Using Bayesian Directed Cyclic Graphical Models (Version 0.1.0)
2024
RCDT : Fast 2D Constrained Delaunay Triangulation (Version 1.3.0)
2022
RationalMatrix : Exact Matrix Algebra for Rational Matrices (Version 1.0.0)
2023
SobolSequence : Sobol Sequences with Better Two-Dimensional Projections (Version 1.0.1)
2017
VBJM : Variational Inference for Joint Model (Version 0.1.0)
2023
bayestransmission : Bayesian Transmission Models (Version 0.1.0)
2026
blaster : Native R Implementation of an Efficient BLAST-Like Algorithm (Version 1.0.7)
2021
communication
Speech : (Version )
0
cpss : Change-Point Detection by Sample-Splitting Methods (Version 0.0.3)
2020
gfiExtremes : Generalized Fiducial Inference for Extremes (Version 1.0.1)
2020
jack : Jack, Zonal, Schur, and Other Symmetric Polynomials (Version 6.1.0)
2019
lnmixsurv : Bayesian Mixture Log-Normal Survival Model (Version 3.1.6)
2024
mgwrsar : GWR, Mixed GWR with Spatial Autocorrelation and Multiscale GWR (Top-Down Scale Approaches) (Version 1.3.1)
2018
mlxR : Simulation of Longitudinal Data (Version 4.2.0)
2015
pMEM : Predictive Moran's Eigenvector Maps (Version 0.1-1)
2024
pleiotest : Fast Sequential Pleiotropy Test (Version 1.0.0)
2021
qs : Quick Serialization of R Objects (Version 0.27.3)
2019
qspray : Multivariate Polynomials with Rational Coefficients (Version 3.1.0)
2022
ratioOfQsprays : Fractions of Multivariate Polynomials with Rational Coefficients (Version 1.1.0)
2024
rbridge : Restricted Bridge Estimation (Version 1.0.2)
2019
serocalculator : Estimating Infection Rates from Serological Data (Version 1.4.0)
2024
sirus : Stable and Interpretable RUle Set (Version 0.3.3)
2019
starvz : R-Based Visualization Techniques for Task-Based Applications (Version 0.8.4)
2020
steps : Spatially- and Temporally-Explicit Population Simulator (Version 1.3.0)
2019
symbolicQspray
Coefficients : (Version )
0
tidygenomics : Tidy Verbs for Dealing with Genomic Data Frames (Version 0.1.2)
2017
CircularDDM : Circular Drift-Diffusion Model (Version 0.1.0)
2017
CircularSilhouette : Fast Silhouette on Circular or Linear Data Clusters (Version 0.0.1)
2022
Ckmeans.1d.dp : Optimal, Fast, and Reproducible Univariate Clustering (Version 4.3.5)
2010
Cleanet
Data : (Version )
0
ClinicalTrialSummary : Summary Measures for Clinical Trials with Survival Outcomes (Version 1.1.1)
2017
ClusPred
Regression : (Version )
0
ClustVarLV : Clustering of Variables Around Latent Variables (Version 2.1.1)
2013
CoMiRe : Convex Mixture Regression (Version 0.8)
2020
Colossus
Models" : (Version )
0
CompositionalRF : Multivariate Random Forest with Compositional Responses (Version 1.4)
2024
ConsReg
Coefficient : (Version )
0
CorMID : Correct Mass Isotopologue Distribution Vectors (Version 0.3.1)
2022
Countr : Flexible Univariate Count Models Based on Renewal Processes (Version 3.6.1)
2016
CovTools : Statistical Tools for Covariance Analysis (Version 0.5.6)
2017
CptNonPar
Series : (Version )
0
Crossover : Analysis and Search of Crossover Designs (Version 0.1-22)
2014
CrownScorchTLS : Estimate Crown Scorch from Terrestrial LiDAR Scans (Version 0.1.1)
2025
CspStandSegmentation
Data : (Version )
0
Cyclops
Analysis : (Version )
0
CytoSimplex
Data : (Version )
0
DAISIE
Extinction : (Version )
0
DCEM
Algorithm : (Version )
0
DCLEAR : Distance Based Cell Lineage Reconstruction (Version 1.0.13)
2021
DCPO : Dynamic Comparative Public Opinion (Version 0.5.3)
2020
DDD : Diversity-Dependent Diversification (Version 5.2.4)
2012
DDRTree : Learning Principal Graphs with DDRTree (Version 0.1.5)
2016
DEploid : Deconvolute Mixed Genomes with Unknown Proportions (Version 0.5.7)
2016
DEploid.utils : 'DEploid' Data Analysis and Results Interpretation (Version 0.0.1)
2024
DGP4LCF : Dependent Gaussian Processes for Longitudinal Correlated Factors (Version 1.0.0.1)
2024
EpiInvert : Variational Techniques in Epidemiology (Version 0.3.1)
2022
EpiLPS
Parameters : (Version )
0
EpiNow2
Parameters : (Version )
0
NlinTS : Models for Non Linear Causality Detection in Time Series (Version 1.4.6)
2018
Numero : Statistical Framework to Define Subgroups in Complex Datasets (Version 1.10.1)
2017
RDSsamplesize : RDS Sample Size Estimation and Power Calculation (Version 0.5.0)
2022
bfp : Bayesian Fractional Polynomials (Version 0.0-49)
2010
bggum
Parameters : (Version )
0
bgms : Bayesian Analysis of Networks of Binary and/or Ordinal Variables (Version 0.1.6.2)
2023
bgsmtr : Bayesian Group Sparse Multi-Task Regression (Version 0.7)
2016
bhetGP : Bayesian Heteroskedastic Gaussian Processes (Version 1.0.1)
2025
bife : Binary Choice Models with Fixed Effects (Version 0.7.3)
2016
bigPCAcpp : Principal Component Analysis for 'bigmemory' Matrices (Version 0.9.0)
2025
bigPLSR : Partial Least Squares Regression Models with Big Matrices (Version 0.7.2)
2025
bigPLScox : Partial Least Squares for Cox Models with Big Matrices (Version 0.8.1)
2025
bigReg : Generalized Linear Models (GLM) for Large Data Sets (Version 0.1.5)
2016
bigSurvSGD : Big Survival Analysis Using Stochastic Gradient Descent (Version 0.0.1)
2020
biglasso : Extending Lasso Model Fitting to Big Data (Version 1.6.1)
2016
eyelinkReader : Import Gaze Data for EyeLink Eye Tracker (Version 1.0.3)
2022
fChange : Functional Change Point Detection and Analysis (Version 2.1.0)
2017
fEGarch : SM/LM EGARCH & GARCH, VaR/ES Backtesting & Dual LM Extensions (Version 1.0.4)
2025
fHMM : Fitting Hidden Markov Models to Financial Data (Version 1.4.2)
2021
fICA : Classical, Reloaded and Adaptive FastICA Algorithms (Version 1.1-3)
2013
fRLR : Fit Repeated Linear Regressions (Version 1.3.0)
2017
fable.prophet : Prophet Modelling Interface for 'fable' (Version 0.1.0)
2020
fable : Forecasting Models for Tidy Time Series (Version 0.4.1)
2019
fableCount
Framework : (Version )
0
ABCoptim : Implementation of Artificial Bee Colony (ABC) Optimization (Version 0.15.0)
2013
ABM : Agent Based Model Simulation Framework (Version 0.4.3)
2023
ACDm : Tools for Autoregressive Conditional Duration Models (Version 1.1.0)
2015
ACEt : Estimating Dynamic Heritability and Twin Model Comparison (Version 1.9.0)
2016
ADMM : Algorithms using Alternating Direction Method of Multipliers (Version 0.3.4)
2017
ADSIHT : Adaptive Double Sparse Iterative Hard Thresholding (Version 0.2.1)
2024
ALFAM2 : Dynamic Model of Ammonia Emission from Field-Applied Manure (Version 4.2.14)
2024
ALUES : Agricultural Land Use Evaluation System (Version 0.2.1)
2022
AMISforInfectiousDiseases : Implement the AMIS Algorithm for Infectious Disease Models (Version 0.1.0)
2025
ANN2 : Artificial Neural Networks for Anomaly Detection (Version 2.4.0)
2017
APackOfTheClones
Profiles : (Version )
0
ASV : Stochastic Volatility Models with or without Leverage (Version 1.1.4)
2022
ATAforecasting
Method : (Version )
0
ATNr : Run Allometric Trophic Networks Models (Version 1.1.2)
2022
AcceptReject
Observations : (Version )
0
ActiveLearning4SPM : Active Learning for Process Monitoring (Version 0.1.0)
2025
AdaptGauss : Gaussian Mixture Models (GMM) (Version 1.6)
2015
AhoCorasickTrie : Fast Searching for Multiple Keywords in Multiple Texts (Version 0.1.3)
2016
AllelicSeries : Allelic Series Test (Version 0.1.1.5)
2023
AlphaSimR : Breeding Program Simulations (Version 2.1.0)
2018
AlphaPart
Information : (Version )
0
Amelia : A Program for Missing Data (Version 1.8.3)
2007
AnaCoDa
Framework : (Version )
0
AovBay
Panel : (Version )
0
Apoderoides
Tree : (Version )
0
AsianOption : Asian Option Pricing with Price Impact (Version 0.1.0)
2025
BAMBI : Bivariate Angular Mixture Models (Version 2.3.6)
2017
BAREB : A Bayesian Repulsive Biclustering Model for Periodontal Data (Version 0.1.2)
2020
BART : Bayesian Additive Regression Trees (Version 2.9.9)
2017
BCClong : Bayesian Consensus Clustering for Multiple Longitudinal Features (Version 1.0.3)
2023
BCEE : The Bayesian Causal Effect Estimation Algorithm (Version 1.3.2)
2015
BEKKs : Multivariate Conditional Volatility Modelling and Forecasting (Version 1.4.6)
2022
BET : Binary Expansion Testing (Version 0.5.4)
2020
BGGM : Bayesian Gaussian Graphical Models (Version 2.1.6)
2020
BGVAR : Bayesian Global Vector Autoregressions (Version 2.5.9)
2020
BHSBVAR : Structural Bayesian Vector Autoregression Models (Version 3.1.3)
2018
BIDistances : Bioinformatic Distances (Version 0.1.3)
2023
BIFIEsurvey : Tools for Survey Statistics in Educational Assessment (Version 3.8.0)
2014
BINtools : Bayesian BIN (Bias, Information, Noise) Model of Forecasting (Version 0.2.0)
2021
BLMEngineInR : Biotic Ligand Model Engine (Version 0.1.7)
2025
BLPestimatoR : Performs a BLP Demand Estimation (Version 0.3.4)
2017
BLSM : Bayesian Latent Space Model (Version 0.1.0)
2018
BMisc
Results : (Version )
0
BNSL : Bayesian Network Structure Learning (Version 0.1.4)
2017
BPrinStratTTE
Antibodies : (Version )
0
BSL : Bayesian Synthetic Likelihood (Version 3.2.5)
2018
BSPBSS : Bayesian Spatial Blind Source Separation (Version 1.0.6)
2022
BSSprep : Whitening Data as Preparation for Blind Source Separation (Version 0.1)
2021
BSTFA : Bayesian Spatio-Temporal Factor Analysis Model (Version 0.1.0)
2025
BTLLasso : Modelling Heterogeneity in Paired Comparison Data (Version 0.1-14)
2015
BTM : Biterm Topic Models for Short Text (Version 0.3.8)
2018
BTtest : Estimate the Number of Factors in Large Nonstationary Datasets (Version 0.10.3)
2023
BWStest : Baumgartner Weiss Schindler Test of Equal Distributions (Version 0.2.3)
2016
BalancedSampling : Balanced and Spatially Balanced Sampling (Version 2.1.1)
2014
Bayenet : Robust Bayesian Elastic Net (Version 0.3)
2023
BayesChange : Bayesian Methods for Change Point Analysis (Version 2.2.0)
2025
BayesDLMfMRI : Statistical Analysis for Task-Based Fmri Data (Version 0.0.3)
2023
BayesDecon : Density Deconvolution Using Bayesian Semiparametric Methods (Version 0.1.4)
2026
BayesESS : Determining Effective Sample Size (Version 0.1.19)
2018
BayesFactor : Computation of Bayes Factors for Common Designs (Version 0.9.12-4.7)
2012
BayesGmed : Bayesian Causal Mediation Analysis using 'Stan' (Version 0.0.3)
2023
BayesGrowth : Estimate Fish Growth Using MCMC Analysis (Version 1.0.0)
2023
BayesLN : Bayesian Inference for Log-Normal Data (Version 0.2.12)
2020
BayesMFSurv : Bayesian Misclassified-Failure Survival Model (Version 0.1.0)
2019
BayesMallows : Bayesian Preference Learning with the Mallows Rank Model (Version 2.2.7)
2018
BayesMallowsSMC2 : Nested Sequential Monte Carlo for the Bayesian Mallows Model (Version 0.2.0)
2026
BayesPIM : Bayesian Prevalence-Incidence Mixture Model (Version 1.0.0)
2025
BayesPPD : Bayesian Power Prior Design (Version 1.1.3)
2021
BayesPPDSurv : Bayesian Power Prior Design for Survival Data (Version 1.0.3)
2024
BayesProject : Fast Projection Direction for Multivariate Changepoint Detection (Version 1.0)
2020
BayesRegDTR : Bayesian Regression for Dynamic Treatment Regimes (Version 1.1.2)
2025
BayesSenMC
Ratio : (Version )
0
BayesSurvive : Bayesian Survival Models for High-Dimensional Data (Version 0.1.0)
2024
BayesfMRI : Spatial Bayesian Methods for Task Functional MRI Studies (Version 0.11.0)
2023
BayesianLasso : Bayesian Lasso Regression and Tools for the Lasso Distribution (Version 0.3.6)
2025
BayesianPlatformDesignTimeTrend : Simulate and Analyse Bayesian Platform Trial with Time Trend (Version 1.2.3)
2023
BayesianTools
Statistics : (Version )
0
Bayesrel : Bayesian Reliability Estimation (Version 0.7.8)
2019
BeSS : Best Subset Selection in Linear, Logistic and CoxPH Models (Version 2.0.4)
2017
Benchmarking : Benchmark and Frontier Analysis Using DEA and SFA (Version 0.33)
2010
Bernadette : Bayesian Inference and Model Selection for Stochastic Epidemics (Version 1.1.6)
2023
Bestie : Bayesian Estimation of Intervention Effects (Version 0.1.5)
2020
BeviMed : Bayesian Evaluation of Variant Involvement in Mendelian Disease (Version 7.0)
2016
BiDAG : Bayesian Inference for Directed Acyclic Graphs (Version 2.1.4)
2017
BigDataStatMeth
Methods : (Version )
0
BigQuic : Big Quadratic Inverse Covariance Estimation (Version 1.1-13)
2016
BigVAR : Dimension Reduction Methods for Multivariate Time Series (Version 1.1.4)
2016
BinSegBstrap : Piecewise Smooth Regression by Bootstrapped Binary Segmentation (Version 1.0-1)
2019
BinaryReplicates : Dealing with Binary Replicates (Version 1.0.0)
2026
Bioi : Biological Image Analysis (Version 0.2.10)
2018
BivRec : Bivariate Alternating Recurrent Event Data Analysis (Version 1.2.1)
2018
Blend
Models : (Version )
0
BoltzMM : Boltzmann Machines with MM Algorithms (Version 0.1.5)
2018
BoostMLR : Boosting for Multivariate Longitudinal Responses (Version 1.0.3)
2020
BosonSampling : Classical Boson Sampling (Version 0.1.5)
2017
BranchGLM
Algorithms : (Version )
0
BuyseTest : Generalized Pairwise Comparisons (Version 3.3.4)
2016
CARBayes : Spatial Generalised Linear Mixed Models for Areal Unit Data (Version 6.1.1)
2012
CARBayesST
Data : (Version )
0
CARME : CAR-MM Modelling in Stan (Version 0.1.1)
2023
CARMS : Continuous Time Markov Rate Modeling for Reliability Analysis (Version 1.0.1)
2024
CB2 : CRISPR Pooled Screen Analysis using Beta-Binomial Test (Version 1.3.6)
2019
CCMMR : Minimization of the Convex Clustering Loss Function (Version 0.2.1)
2023
CDM : Cognitive Diagnosis Modeling (Version 8.3-14)
2011
CDatanet : Econometrics of Network Data (Version 2.2.2)
2021
CERFIT : Causal Effect Random Forest of Interaction Trees (Version 0.1.1)
2022
CFC : Cause-Specific Framework for Competing-Risk Analysis (Version 1.2.1)
2015
CGGP : Composite Grid Gaussian Processes (Version 1.0.4)
2019
CKLRT
Test : (Version )
0
CLVTools : Tools for Customer Lifetime Value Estimation (Version 0.12.1)
2020
CMGFM : Covariate-Augumented Generalized Factor Model (Version 1.1)
2024
CNVRG : Dirichlet Multinomial Modeling of Relative Abundance Data (Version 1.0.0)
2020
COMIX : Coarsened Mixtures of Hierarchical Skew Kernels (Version 1.0.1)
2022
COMPoissonReg : Conway-Maxwell Poisson (COM-Poisson) Regression (Version 0.8.1)
2010
CPGLIB : Competing Proximal Gradients Library (Version 1.1.2)
2021
CRTConjoint
Analysis : (Version )
0
CSTE : Covariate Specific Treatment Effect (CSTE) Curve (Version 3.0.0)
2021
CSeQTL : Cell Type-Specific Expression Quantitative Trail Loci Mapping (Version 1.0.0)
2025
CVXR : Disciplined Convex Optimization (Version 1.0-15)
2017
CWT : Continuous Wavelet Transformation for Spectroscopy (Version 0.2.1)
2024
CamelUp
Statistics : (Version )
0
Carlson : Carlson Elliptic Integrals and Incomplete Elliptic Integrals (Version 3.0.0)
2020
CaseBasedReasoning : Case Based Reasoning (Version 0.3)
2018
CausalGPS
Exposures : (Version )
0
CausalQueries : Make, Update, and Query Binary Causal Models (Version 1.4.4)
2020
ChangePointTaylor : Identify Changes in Mean (Version 0.3)
2020
ChannelAttribution : Markov Model for Online Multi-Channel Attribution (Version 2.2.4)
2015
CensSpatial : Censored Spatial Models (Version 3.6)
2016
DER : Income Polarization Index (Version 1.3)
2025
DIFM : Dynamic ICAR Spatiotemporal Factor Models (Version 1.0.1)
2024
DNAmotif : DNA Sequence Motifs (Version 0.1.1)
2024
DMCfun : Diffusion Model of Conflict (DMC) in Reaction Time Tasks (Version 4.0.1)
2020
DLMtool : Data-Limited Methods Toolkit (Version 6.0.6)
2014
DNAtools : Tools for Analysing Forensic Genetic DNA Data (Version 0.2-5)
2010
DOVE : Durability of Vaccine Efficacy (Version 1.11)
2021
DPTM : Dynamic Panel Multiple Threshold Model with Fixed Effects (Version 3.0.2)
2024
DR.SC : Joint Dimension Reduction and Spatial Clustering (Version 3.7)
2021
DRDID : Doubly Robust Difference-in-Differences Estimators (Version 1.2.3)
2020
DRPT : Density Ratio Permutation Test (Version 1.1)
2025
DSWE : Data Science for Wind Energy (Version 1.8.4)
2021
DTDA.cif : Doubly Truncated Data Analysis, Cumulative Incidence Functions (Version 1.0.2)
2019
DataGraph : Export Data from 'R' to 'DataGraph' (Version 1.2.15)
2017
DataVisualizations : Visualizations of High-Dimensional Data (Version 1.4.0)
2018
DataViz : Data Visualisation Using an HTML Page and 'D3.js' (Version 0.2.8)
2019
DatabionicSwarm : Swarm Intelligence for Self-Organized Clustering (Version 2.0.0)
2017
DeCAFS : Detecting Changes in Autocorrelated and Fluctuating Signals (Version 3.3.5)
2020
DepthProc : Statistical Depth Functions for Multivariate Analysis (Version 2.1.6)
2014
DescTools : Tools for Descriptive Statistics (Version 0.99.60)
2014
Dire : Linear Regressions with a Latent Outcome Variable (Version 2.2.0)
2021
DiscreteDists : Discrete Statistical Distributions (Version 1.1.1)
2024
DrImpute : Imputing Dropout Events in Single-Cell RNA-Sequencing Data (Version 1.0)
2017
DstarM : Analyze Two Choice Reaction Time Data with the D*M Method (Version 0.5.0)
2016
DySS : Dynamic Screening Systems (Version 1.0.1)
2022
DyadiCarma
'RcppArmadillo' : (Version )
0
DysPIA : Dysregulated Pathway Identification Analysis (Version 1.3)
2020
EFAfactors : Determining the Number of Factors in Exploratory Factor Analysis (Version 1.2.4)
2024
EFAtools
Tools : (Version )
0
EMC2 : Bayesian Hierarchical Analysis of Cognitive Models of Choice (Version 3.4.1)
2024
EMbC : Expectation-Maximization Binary Clustering (Version 2.0.4)
2015
ETAS : Modeling Earthquake Data Using 'ETAS' Model (Version 0.7.2)
2012
Ease : Simulating Explicit Population Genetics Models (Version 0.1.2)
2022
EasyABC : Efficient Approximate Bayesian Computation Sampling Schemes (Version 1.6)
2012
EcoEnsemble : A General Framework for Combining Ecosystem Models (Version 1.1.2)
2022
EloChoice : Preference Rating for Visual Stimuli Based on Elo Ratings (Version 0.29.4)
2015
EmiR : Evolutionary Minimizer for R (Version 1.0.5)
2021
EloRating : Animal Dominance Hierarchies by Elo Rating (Version 0.46.18)
2014
EquiTrends
Designs : (Version )
0
EthSEQ
Data : (Version )
0
Euclimatch : Euclidean Climatch Algorithm (Version 1.0.2)
2023
ExactMultinom : Multinomial Goodness-of-Fit Tests (Version 0.1.3)
2020
ExactVaRTest : Exact Finite-Sample Value-at-Risk Back-Testing (Version 0.1.3)
2025
ExhaustiveSearch : A Fast and Scalable Exhaustive Feature Selection Framework (Version 1.0.2)
2021
FBCRM
Methods : (Version )
0
FBMS : Flexible Bayesian Model Selection and Model Averaging (Version 1.3)
2023
FDOTT : Optimal Transport Based Testing in Factorial Design (Version 0.1.0)
2025
FDX
Procedures : (Version )
0
FENmlm : Fixed Effects Nonlinear Maximum Likelihood Models (Version 2.4.4)
2015
FIESTAutils : Utility Functions for Forest Inventory Estimation and Analysis (Version 1.3.2)
2022
FKSUM : Fast Kernel Sums (Version 1.0.1)
2019
FLOPART : Functional Labeled Optimal Partitioning (Version 2024.6.19)
2023
FLORAL : Fit Log-Ratio Lasso Regression for Compositional Data (Version 0.6.0)
2023
FLSSS : Mining Rigs for Problems in the Subset Sum Family (Version 9.2.8)
2014
FRESA.CAD : Feature Selection Algorithms for Computer Aided Diagnosis (Version 3.4.8)
2014
FRK : Fixed Rank Kriging (Version 2.3.2)
2017
FSSF
Hypercube : (Version )
0
FVDDPpkg : Implement Fleming-Viot-Dependent Dirichlet Processes (Version 0.1.2)
2024
FastBandChol
Factor : (Version )
0
FastGP : Efficiently Using Gaussian Processes with Rcpp and RcppEigen (Version 1.2)
2015
FastGaSP : Fast and Exact Computation of Gaussian Stochastic Process (Version 0.6.2)
2019
FastJM : Semi-Parametric Joint Modeling of Longitudinal and Survival Data (Version 1.5.3)
2022
FastKRR : Kernel Ridge Regression using 'RcppArmadillo' (Version 0.1.2)
2025
FaultTree : Fault Trees for Risk and Reliability Analysis (Version 1.0.1)
2020
FastUtils : Fast, Readable Utility Functions (Version 0.2.1)
2024
FiRE : Finder of Rare Entities (FiRE) (Version 1.0.1)
2019
FinNet : Quickly Build and Manipulate Financial Networks (Version 0.2.1)
2023
FisPro : Fuzzy Inference System Design and Optimization (Version 1.1.4)
2019
FlexRL : A Flexible Model for Record Linkage (Version 0.1.1)
2024
FlexReg : Regression Models for Bounded Continuous and Discrete Responses (Version 1.4.1)
2020
FlexVarJM : Estimate Joint Models with Subject-Specific Variance (Version 0.1.0)
2023
FlyingR : Simulation of Bird Flight Range (Version 0.2.2)
2020
FunChisq : Model-Free Functional Chi-Squared and Exact Tests (Version 2.5.4)
2014
FuncDiv : Compute Contributional Diversity Metrics (Version 1.0.0)
2023
GA : Genetic Algorithms (Version 3.2.5)
2012
GADAG : A Genetic Algorithm for Learning Directed Acyclic Graphs (Version 0.99.0)
2017
GAPR : Generalized Association Plots (Version 0.1.4)
2025
GBOP2 : Generalized Bayesian Optimal Phase II Design (G-BOP2) (Version 0.1.4)
2025
GCPM : Generalized Credit Portfolio Model (Version 1.2.2)
2014
GCPBayes
Structure : (Version )
0
GCSM : Implements Generic Composite Similarity Measure (Version 0.2.0)
2020
GDINA : The Generalized DINA Model Framework (Version 2.9.12)
2016
GENLIB : Genealogical Data Analysis (Version 1.1.10)
2014
GFM : Generalized Factor Model (Version 1.2.2)
2022
GGClassification : Gabriel Graph Based Large-Margin Classifiers (Version 0.1)
2020
GGIRread : Wearable Accelerometer Data File Readers (Version 1.0.7)
2022
GLCMTextures : GLCM Textures of Raster Layers (Version 0.6.3)
2022
GLMcat : Generalized Linear Models for Categorical Responses (Version 1.0.0)
2020
GMCM : Fast Estimation of Gaussian Mixture Copula Models (Version 1.4)
2014
GMMAT : Generalized Linear Mixed Model Association Tests (Version 1.5.0)
2023
GPBayes
Quantification : (Version )
0
GPCMlasso
Models : (Version )
0
GPFDA : Gaussian Process for Functional Data Analysis (Version 3.1.3)
2013
GPGame : Solving Complex Game Problems using Gaussian Processes (Version 1.2.1)
2017
GPTCM
Priors : (Version )
0
GPareto : Gaussian Processes for Pareto Front Estimation and Optimization (Version 1.1.9)
2014
GPpenalty : Penalized Likelihood in Gaussian Processes (Version 1.0.1)
2025
GPvecchia : Scalable Gaussian-Process Approximations (Version 0.1.7)
2019
GRAB : Genome-Wide Robust Analysis for Biobank Data (GRAB) (Version 0.2.4)
2025
GTEs : Group Technical Effects (Version 1.0.0)
2025
GUD : Bayesian Modal Regression Based on the GUD Family (Version 1.0.2)
2024
GUTS
Model : (Version )
0
GWEX
Temperature : (Version )
0
GWmodel : Geographically-Weighted Models (Version 2.4-1)
2013
GauPro : Gaussian Process Fitting (Version 0.2.17)
2016
GeDS : Geometrically Designed Spline Regression (Version 0.3.3)
2017
GenEst : Generalized Mortality Estimator (Version 1.4.9)
2018
GeneralizedUmatrix : Credible Visualization for Two-Dimensional Projections of Data (Version 1.3.1)
2017
GeneralizedUmatrixGPU : Credible Visualization for Two-Dimensional Projections of Data (Version 0.1.10)
2025
GeneralizedWendland : Fully Parameterized Generalized Wendland Covariance Function (Version 0.6.1)
2022
GenomeAdmixR : Simulate Admixture of Genomes (Version 2.1.12)
2021
GeoFIS : Spatial Data Processing for Decision Making (Version 1.1.1)
2021
GiRaF : Gibbs Random Fields Analysis (Version 1.0.2)
2016
GillespieSSA2 : Gillespie's Stochastic Simulation Algorithm for Impatient People (Version 0.3.0)
2019
GiniDistance
Variables : (Version )
0
Glarmadillo : Solve the Graphical Lasso Problem with 'Armadillo' (Version 1.1.1)
2023
Gmedian : Geometric Median, k-Medians Clustering and Robust Median PCA (Version 1.2.7)
2016
Gmisc : Descriptive Statistics, Transition Plots, and More (Version 3.1.0)
2015
GpGp : Fast Gaussian Process Computation Using Vecchia's Approximation (Version 1.0.0)
2018
GreedyEPL : Greedy Expected Posterior Loss (Version 1.3)
2017
GreedyExperimentalDesign : Greedy Experimental Design Construction (Version 1.6)
2016
GridOnClusters : Multivariate Joint Grid Discretization (Version 0.3.2)
2020
GrpString
Strings : (Version )
0
HBV.IANIGLA : Modular Hydrological Model (Version 0.2.6)
2019
HDMAADMM : ADMM for High-Dimensional Mediation Models (Version 0.0.1)
2023
HDNRA
Approaches : (Version )
0
HDSpatialScan : Multivariate and Functional Spatial Scan Statistics (Version 1.0.5)
2021
HDTSA : High Dimensional Time Series Analysis Tools (Version 1.0.5-1)
2021
HLMdiag : Diagnostic Tools for Hierarchical (Multilevel) Linear Models (Version 0.5.1)
2011
HSAR : Hierarchical Spatial Autoregressive Model (Version 0.6.0)
2015
HTLR : Bayesian Logistic Regression with Heavy-Tailed Priors (Version 1.0)
2019
HTT : Hypothesis Testing Tree (Version 0.1.2)
2022
HUM : Compute HUM Value and Visualize ROC Curves (Version 2.0)
2014
HardyWeinberg : Statistical Tests and Graphics for Hardy-Weinberg Equilibrium (Version 1.7.9)
2007
HiCociety : Inferring Chromatin Interaction Modules from 3C-Based Data (Version 0.1.38)
2025
HiGarrote
Relationships : (Version )
0
HistDAWass : Histogram-Valued Data Analysis (Version 1.0.8)
2015
IAPWS95 : Thermophysical Properties of Water and Steam (Version 1.2.5)
2016
IBMPopSim : Individual Based Model Population Simulation (Version 1.1.0)
2020
IBclust : Information Bottleneck Methods for Clustering Mixed-Type Data (Version 1.2.1)
2025
ICAOD : Optimal Designs for Nonlinear Models via ICA (Version 1.0.2)
2016
ICEbox : Individual Conditional Expectation Plot Toolbox (Version 1.2)
2013
ICSKAT : Interval-Censored Sequence Kernel Association Test (Version 0.3.0)
2021
ICcalib : Cox Model with Interval-Censored Starting Time of a Covariate (Version 1.0.8)
2018
ICvectorfields : Vector Fields from Spatial Time Series of Population Abundance (Version 0.1.2)
2021
IFC : Tools for Imaging Flow Cytometry (Version 0.2.1)
2020
IHSEP : Inhomogeneous Self-Exciting Process (Version 0.3.1)
2016
IRTM : Theory-Driven Item Response Theory (IRT) Models (Version 0.0.1.1)
2025
IRon : Solving Imbalanced Regression Tasks (Version 0.1.5)
2022
ISOpureR : Deconvolution of Tumour Profiles (Version 1.1.3)
2014
ImpactEffectsize : Calculation and Visualization of the Impact Effect Size Measure (Version 0.8)
2019
IncDTW : Incremental Calculation of Dynamic Time Warping (Version 1.1.4.6)
2017
IntervalSurgeon : Operating on Integer-Bounded Intervals (Version 1.3)
2018
IsingSampler : Sampling Methods and Distribution Functions for the Ising Model (Version 0.2.4)
2014
IsoSpecR : The IsoSpec Algorithm (Version 2.3.3)
2016
JANE : Just Another Latent Space Network Clustering Algorithm (Version 2.1.0)
2024
JFM : Rock Mass Structural Analysis from 3D Mesh of Point Cloud (Version 1.0.1)
2022
JMH : Joint Model of Heterogeneous Repeated Measures and Survival Data (Version 1.0.3)
2023
JMI : Jackknife Mutual Information (Version 0.1.0)
2018
JMbayes2 : Extended Joint Models for Longitudinal and Time-to-Event Data (Version 0.5-7)
2021
JOUSBoost : Implements Under/Oversampling for Probability Estimation (Version 2.1.0)
2016
JSM : Semiparametric Joint Modeling of Survival and Longitudinal Data (Version 1.0.2)
2016
JUMP : Replicability Analysis of High-Throughput Experiments (Version 1.0.2)
2023
JacobiEigen : Classical Jacobi Eigenvalue Algorithm (Version 0.3-4)
2015
JuliaCall : Seamless Integration Between R and 'Julia' (Version 0.17.6)
2017
KDEmcmc : Kernel Density Estimation with a Markov Chain Monte Carlo Sample (Version 0.0.2)
2025
KONPsurv : KONP Tests: Powerful K-Sample Tests for Right-Censored Data (Version 1.0.4)
2019
KWCChangepoint
Data : (Version )
0
KernSmoothIRT : Nonparametric Item Response Theory (Version 6.4)
2011
KernelKnn : Kernel k Nearest Neighbors (Version 1.1.6)
2016
Keyboard : Bayesian Designs for Early Phase Clinical Trials (Version 0.1.3)
2020
KeyboardSimulator : Keyboard and Mouse Input Simulation for Windows OS (Version 2.6.2)
2018
L0Learn : Fast Algorithms for Best Subset Selection (Version 2.1.0)
2018
L1centrality : Graph/Network Analysis Based on L1 Centrality (Version 0.4.0)
2023
LA : Lioness Algorithm (LA) (Version 2.3)
2021
LAM : Some Latent Variable Models (Version 0.7-22)
2017
LBSPR : Length-Based Spawning Potential Ratio (Version 0.1.6)
2016
LCPA : A General Framework for Latent Classify and Profile Analysis (Version 1.0.0)
2026
LDAandLDAS : Linkage Disequilibrium of Ancestry (LDA) and LDA Score (LDAS) (Version 1.1.3)
2022
LGCU
Charts : (Version )
0
LMMELSM : Fit Latent Multivariate Mixed Effects Location Scale Models (Version 0.2.1)
2021
LMMsolver : Linear Mixed Models with Sparse Matrix Methods and Smoothing (Version 1.0.12)
2021
LMN : Inference for Linear Models with Nuisance Parameters (Version 1.1.3)
2022
LOMAR : Localization Microscopy Data Analysis (Version 0.5.1)
2021
LOPART : Labeled Optimal Partitioning (Version 2024.6.19)
2020
LTFGRS
Scores : (Version )
0
LTFHPlus : Implementation of LT-FH++ (Version 2.2.0)
2024
LaF : Fast Access to Large ASCII Files (Version 0.8.6)
2011
LaMa
Models : (Version )
0
Langevin : Langevin Analysis in One and Two Dimensions (Version 1.3.3)
2015
LassoBacktracking
Backtracking : (Version )
0
LassoHiDFastGibbs
Regression : (Version )
0
LassoNet : 3CoSE Algorithm (Version 0.8.3)
2020
LeMaRns : Length-Based Multispecies Analysis by Numerical Simulation (Version 0.1.2)
2019
LearnNonparam : 'R6'-Based Flexible Framework for Permutation Tests (Version 1.3.0)
2024
Lmoments : L-Moments and Quantile Mixtures (Version 1.3-2)
2005
LorenzRegression : Lorenz and Penalized Lorenz Regressions (Version 2.3.0)
2023
Luminescence : Comprehensive Luminescence Dating Data Analysis (Version 1.1.2)
2012
MABOUST : Multi-Armed Bayesian Ordinal Utility-Based Sequential Trial (Version 1.0.1)
2020
MADMMplasso : Multi Variate Multi Response ADMM with Interaction Effects (Version 1.0.1)
2025
MADPop : MHC Allele-Based Differencing Between Populations (Version 1.1.7)
2017
MAGEE : Mixed Model Association Test for GEne-Environment Interaction (Version 1.4.4)
2023
MAINT.Data : Model and Analyse Interval Data (Version 2.7.4)
2011
MAT : Multidimensional Adaptive Testing (Version 2.3.2)
2011
MATES : Multi-View Aggregated Two Sample Tests (Version 0.1)
2026
MAVE : Methods for Dimension Reduction (Version 1.3.12)
2017
MAZE : Mediation Analysis for Zero-Inflated Mediators (Version 0.0.2)
2023
MBRM
Effects : (Version )
0
MCARtest : Optimal Nonparametric Testing of Missing Completely at Random (Version 1.3)
2022
MCMCprecision : Precision of Discrete Parameters in Transdimensional MCMC (Version 0.4.2)
2017
MCPModPack : Simulation-Based Design and Analysis of Dose-Finding Trials (Version 0.5)
2020
MD2sample : Various Methods for the Two Sample Problem in D>1 Dimensions (Version 1.1.0)
2025
MDCcure : Martingale Dependence Tools and Testing for Mixture Cure Models (Version 0.1.0)
2025
MDDC
Pharmacovigilance : (Version )
0
MEGENA : Multiscale Clustering of Geometrical Network (Version 1.3.7)
2016
MESS : Miscellaneous Esoteric Statistical Scripts (Version 0.6.0)
2012
MGDrivE : Mosquito Gene Drive Explorer (Version 1.6.2)
2019
MGMM : Missingness Aware Gaussian Mixture Models (Version 1.0.1.1)
2020
MHD : Metric Halfspace Depth (Version 0.1.3)
2023
MLModelSelection : Model Selection in Multivariate Longitudinal Data Analysis (Version 1.0)
2020
MM4LMM : Inference of Linear Mixed Models Through MM Algorithm (Version 3.0.3)
2018
MMGFM : Multi-Study Multi-Modality Generalized Factor Model (Version 1.2.1)
2024
MPBoost : Treatment Allocation in Clinical Trials by the Maximal Procedure (Version 0.1-6)
2019
MPTinR : Analyze Multinomial Processing Tree Models (Version 1.14.1)
2011
MSCA
Endpoints : (Version )
0
MSCquartets : Analyzing Gene Tree Quartets under the Multi-Species Coalescent (Version 3.2)
2019
MSEtool : Management Strategy Evaluation Toolkit (Version 3.7.5)
2018
MSGARCH : Markov-Switching GARCH Models (Version 2.51)
2016
MSIMST
Likelihood : (Version )
0
MSTest : Hypothesis Testing for Markov Switching Models (Version 0.1.8)
2022
MSclassifR : Automated Classification of Mass Spectra (Version 0.5.0)
2022
MSinference : Multiscale Inference for Nonparametric Time Trend(s) (Version 0.2.1)
2023
MTLR : Survival Prediction with Multi-Task Logistic Regression (Version 0.2.1)
2018
ManifoldOptim
Optimization : (Version )
0
MarZIC
Mediator : (Version )
0
MarginalMaxTest : Max-Type Test for Marginal Correlation with Bootstrap (Version 1.0.1)
2025
MatchIt : Nonparametric Preprocessing for Parametric Causal Inference (Version 4.7.2)
2005
MatrixCorrelation : Matrix Correlation Coefficients (Version 0.10.1)
2016
MatrixExtra : Extra Methods for Sparse Matrices (Version 0.1.15)
2021
MazamaRollUtils : Efficient Rolling Functions (Version 0.1.4)
2021
MediaK : Calculate MeDiA_K Distance (Version 1.0)
2015
MedianaDesigner : Power and Sample Size Calculations for Clinical Trials (Version 0.13)
2021
MendelianRandomization : Mendelian Randomization Package (Version 0.10.0)
2016
MetaStan : Bayesian Meta-Analysis via 'Stan' (Version 1.0.0)
2018
MetricGraph : Random Fields on Metric Graphs (Version 1.5.0)
2023
Mhorseshoe : Approximate Algorithm for Horseshoe Prior (Version 0.1.5)
2023
MiSPU : Microbiome Based Sum of Powered Score (MiSPU) Tests (Version 1.0)
2016
MicrobiomeStat : Statistical Methods for Microbiome Compositional Data (Version 1.3)
2021
MinTriadic
Statistics : (Version )
0
MissCP : Change Point Detection with Missing Values (Version 0.1.1)
2023
MixLFA : Mixture of Longitudinal Factor Analysis Methods (Version 1.0.0)
2024
MixMatrix : Classification with Matrix Variate Normal and t Distributions (Version 0.2.8)
2019
ModelMetrics : Rapid Calculation of Model Metrics (Version 1.2.2.2)
2016
MomTrunc
Distributions : (Version )
0
MonotonicityTest : Nonparametric Bootstrap Test for Regression Monotonicity (Version 1.3)
2025
Morpho
Morphometrics : (Version )
0
MuChPoint : Multiple Change Point (Version 0.6.4)
2018
MultOrdRS : Model Multivariate Ordinal Responses Including Response Styles (Version 0.1-3)
2021
MultSurvTests : Permutation Tests for Multivariate Survival Analysis (Version 0.2)
2021
MultiBD : Multivariate Birth-Death Processes (Version 1.0.0)
2016
MultiFit
Dependence : (Version )
0
MultiRFM : High-Dimensional Multi-Study Robust Factor Model (Version 1.1.0)
2025
MultiscaleDTM : Multi-Scale Geomorphometric Terrain Attributes (Version 1.0.1)
2022
MultivariateRandomForest : Models Multivariate Cases Using Random Forests (Version 1.1.5)
2016
NAM : Nested Association Mapping (Version 1.7.3)
2015
NLPwavelet : Bayesian Wavelet Analysis Using Non-Local Priors (Version 1.1)
2025
NNS : Nonlinear Nonparametric Statistics (Version 11.6.4)
2016
NPBayesImputeCat : Non-Parametric Bayesian Multiple Imputation for Categorical Data (Version 0.6)
2018
NPCirc : Nonparametric Circular Methods (Version 3.1.2)
2013
NPflow
Data : (Version )
0
NUSS : Mixed N-Grams and Unigram Sequence Segmentation (Version 0.1.0)
2024
NestMRMC : Single Reader Between-Cases AUC Estimator in Nested Data (Version 1.0)
2022
NetworkInference : Inferring Latent Diffusion Networks (Version 1.2.5)
2017
NetRep : Permutation Testing Network Module Preservation Across Datasets (Version 1.2.9)
2016
NetworkDistance : Distance Measures for Networks (Version 0.3.6)
2017
NetMix : Dynamic Mixed-Membership Network Regression Model (Version 0.2.0.3)
2019
OCNet : Optimal Channel Networks (Version 1.2.3)
2019
ODRF : Oblique Decision Random Forest for Classification and Regression (Version 0.0.5)
2023
OPSR : Ordered Probit Switching Regression (Version 1.0.1)
2024
OSFD : Output Space-Filling Design (Version 3.1)
2023
OmicFlow : Fast and Efficient (Automated) Analysis of Sparse Omics Data (Version 1.4.2)
2025
OncoBayes2 : Bayesian Logistic Regression for Oncology Dose-Escalation Trials (Version 0.9-4)
2019
OpenImageR : An Image Processing Toolkit (Version 1.3.0)
2016
OpenMx : Extended Structural Equation Modelling (Version 2.22.10)
2015
Opt5PL : Optimal Designs for the 5-Parameter Logistic Model (Version 0.1.1)
2018
OptimalBinningWoE : Optimal Binning and Weight of Evidence Framework for Modeling (Version 1.0.8)
2026
Orcs : Omnidirectional R Code Snippets (Version 1.2.3)
2018
OwenQ : Owen Q-Function (Version 1.0.8)
2019
PAC
Networks : (Version )
0
PAFit : Generative Mechanism Estimation in Temporal Complex Networks (Version 1.2.11)
2015
PANPRSnext : Building PRS Models Based on Summary Statistics of GWAs (Version 1.2.1)
2023
PAutilities : Streamline Physical Activity Research (Version 1.2.1)
2019
PCMBaseCpp : Fast Likelihood Calculation for Phylogenetic Comparative Models (Version 0.1.11)
2019
PCMRS : Model Response Styles in Partial Credit Models (Version 0.1-5)
2017
PCObw
Criterion : (Version )
0
PCpluS : Piecewise Constant Plus Smooth Regression (Version 1.0.1)
2025
PDEnaiveBayes : Plausible Naive Bayes Classifier Using PDE (Version 0.2.9)
2025
PEPBVS : Bayesian Variable Selection using Power-Expected-Posterior Prior (Version 2.2)
2023
PFIM : Population Fisher Information Matrix (Version 7.0.1)
2022
PHSMM
Models : (Version )
0
PINSPlus : Clustering Algorithm for Data Integration and Disease Subtyping (Version 2.0.9)
2018
PJFM : Variational Inference for High-Dimensional Joint Frailty Model (Version 0.1.0)
2024
PKPDsim : Tools for Performing Pharmacokinetic-Pharmacodynamic Simulations (Version 1.4.1)
2022
PLFD : Portmanteau Local Feature Discrimination for Matrix-Variate Data (Version 0.2.1)
2021
PLMIX : Bayesian Analysis of Finite Mixture of Plackett-Luce Models (Version 2.2.0)
2016
PLNmodels : Poisson Lognormal Models (Version 1.2.2)
2019
POSetR : Partially Ordered Sets in R (Version 1.1.4)
2021
POUMM : The Phylogenetic Ornstein-Uhlenbeck Mixed Model (Version 2.1.8)
2017
PP : Person Parameter Estimation (Version 0.6.3-11)
2011
PPMR : Probabilistic Two Sample Mendelian Randomization (Version 1.0.1)
2019
PPRL : Privacy Preserving Record Linkage (Version 0.3.9)
2018
PPforest : Projection Pursuit Classification Forest (Version 0.2.0)
2017
PPtreeViz : Projection Pursuit Classification Tree Visualization (Version 2.0.4)
2015
PRDA : Conduct a Prospective or Retrospective Design Analysis (Version 1.0.2)
2020
PRECAST
Datasets : (Version )
0
PRIMME : Eigenvalues and Singular Values and Vectors from Large Matrices (Version 3.2-6)
2017
PROsetta : Linking Patient-Reported Outcomes Measures (Version 0.4.2)
2020
PReMiuM : Dirichlet Process Bayesian Clustering, Profile Regression (Version 3.2.13)
2013
PSGD : Projected Subset Gradient Descent (Version 1.0.6)
2022
PSPI : Propensity Score Predictive Inference for Generalizability (Version 1.2)
2025
PUGMM : Parsimonious Ultrametric Gaussian Mixture Models (Version 0.1.2)
2024
PUlasso : High-Dimensional Variable Selection with Presence-Only Data (Version 3.2.5)
2017
PanelCount
Data : (Version )
0
PanelSelect : Panel Sample Selection Models (Version 1.0.0)
2025
PartialNetwork : Estimating Peer Effects Using Partial Network Data (Version 1.1.2)
2023
PenCoxFrail : Regularization in Cox Frailty Models (Version 2.0.1)
2016
Phase123 : Simulating and Conducting Phase 123 Trials (Version 2.1)
2018
Phase12Compare
Outcomes : (Version )
0
PheVis
Resolution : (Version )
0
PhylogeneticEM : Automatic Shift Detection using a Phylogenetic EM (Version 1.8.1)
2017
PieceExpIntensity
Data : (Version )
0
Pijavski : Global Univariate Minimization (Version 1.0.5)
2016
PoDBAY : Vaccine Efficacy Estimation Package (Version 1.4.3)
2021
PoissonMultinomial : The Poisson-Multinomial Distribution (Version 1.1)
2022
PolynomF : Polynomials in R (Version 2.0-8)
2008
PoolTestR : Prevalence and Regression for Pool-Tested (Group-Tested) Data (Version 0.2.0)
2021
PopED : Population (and Individual) Optimal Experimental Design (Version 0.7.0)
2014
PoweR : Computation of Power and Level Tables for Hypothesis Tests (Version 1.1.4)
2013
PracTools : Designing and Weighting Survey Samples (Version 1.7.5)
2013
ProFAST
Reduction : (Version )
0
ProbBreed : Probability Theory for Selecting Candidates in Plant Breeding (Version 1.0.4.9)
2023
ProbitSpatial : Probit with Spatial Dependence, SAR, SEM and SARAR Models (Version 1.1)
2016
ProcData : Process Data Analysis (Version 0.3.2)
2020
ProfileGLMM
Models : (Version )
0
ProjectionBasedClustering : Projection Based Clustering (Version 1.2.2)
2017
QF : Density, Cumulative and Quantile Functions of Quadratic Forms (Version 0.0.9)
2020
QRM
Concepts : (Version )
0
QTL.gCIMapping.GUI
Interface : (Version )
0
QTL.gCIMapping : QTL Genome-Wide Composite Interval Mapping (Version 3.4)
2018
QWDAP : Quantum Walk-Based Data Analysis and Prediction (Version 1.1.20)
2021
Qtools : Utilities for Quantiles (Version 1.6.0)
2016
QuadratiK
Distances : (Version )
0
QuantilePeer : Quantile Peer Effect Models (Version 0.0.1)
2025
Quartet
Measures : (Version )
0
Qval : The Q-Matrix Validation Methods Framework (Version 1.2.4)
2024
R2D2ordinal : Implements Pseudo-R2D2 Prior for Ordinal Regression (Version 1.0.2)
2025
R2sample : Various Methods for the Two Sample Problem (Version 4.1.0)
2022
RAINBOWR : Genome-Wide Association Study with SNP-Set Methods (Version 0.1.38)
2019
RBesT : R Bayesian Evidence Synthesis Tools (Version 1.8-2)
2017
RCSF : Airborne LiDAR Filtering Method Based on Cloth Simulation (Version 1.0.2)
2018
RDM : Quantify Dependence using Rearranged Dependence Measures (Version 0.1.1)
2023
RCTRecruit
Trials : (Version )
0
RDP : The Ramer-Douglas-Peucker Algorithm (Version 0.3.0)
2021
RClickhouse : 'Yandex Clickhouse' Interface for R with Basic 'dplyr' Support (Version 0.6.10)
2017
REddyProc : Post Processing of (Half-)Hourly Eddy-Covariance Measurements (Version 1.3.4)
2018
RGMM : Robust Mixture Model (Version 2.1.0)
2022
RGeode : Geometric Density Estimation (Version 0.1.0)
2017
RI2by2
Outcome : (Version )
0
RInside : C++ Classes to Embed R in C++ (and C) Applications (Version 0.2.19)
2009
RJafroc : Artificial Intelligence Systems and Observer Performance (Version 2.1.2)
2015
RLRsim
Models : (Version )
0
RLumCarlo : Monte-Carlo Methods for Simulating Luminescence Phenomena (Version 0.1.10)
2020
RLumModel
Luminescence : (Version )
0
RMCC : Airborne LiDAR Filtering Method Based on Multiscale Curvature (Version 0.1.2)
2022
RMCLab : Lab for Matrix Completion and Imputation of Discrete Rating Data (Version 0.1.0)
2025
RMFM : Robust Matrix Factor Model (Version 1.1.0)
2024
RMM : Revenue Management Modeling (Version 0.1.0)
2022
RMPSH : Recursive Modified Pattern Search on Hyper-Rectangle (Version 1.1.1)
2020
RMSNumpress : 'Rcpp' Bindings to Native C++ Implementation of MS Numpress (Version 1.0.1)
2020
RMSS : Robust Multi-Model Subset Selection (Version 1.2.3)
2023
RNOmni : Rank Normal Transformation Omnibus Test (Version 1.0.1.2)
2017
RNewsflow : Tools for Comparing Text Messages Across Time and Media (Version 1.2.8)
2016
RNifti : Fast R and C++ Access to NIfTI Images (Version 1.9.0)
2016
RNiftyReg : Image Registration Using the 'NiftyReg' Library (Version 2.8.4)
2010
ROI.plugin.qpoases : 'qpOASES' Plugin for the 'R' Optimization Infrastructure (Version 1.0-3)
2018
ROKET : Optimal Transport-Based Kernel Regression (Version 1.0.0)
2025
ROptSpace : Matrix Reconstruction from a Few Entries (Version 0.2.4)
2017
RPEGLMEN
Penalty : (Version )
0
RPatternJoin : String Similarity Joins for Hamming and Levenshtein Distances (Version 1.0.0)
2024
RPhosFate : Soil and Chemical Substance Emission and Transport Model (Version 2.0.1)
2022
RProtoBuf : R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3) (Version 0.4.25)
2010
RPtests
Models : (Version )
0
RQuantLib : R Interface to the 'QuantLib' Library (Version 0.4.26)
2002
RRI : Residual Randomization Inference for Regression Models (Version 1.1)
2019
RSNNS
(SNNS) : (Version )
0
RSSL
Classification : (Version )
0
RSTr : Gibbs Samplers for Discrete Bayesian Spatiotemporal Models (Version 1.0.0)
2026
RScelestial
Inference : (Version )
0
RSpectra : Solvers for Large-Scale Eigenvalue and SVD Problems (Version 0.16-2)
2016
RStoolbox : Remote Sensing Data Analysis (Version 1.0.2.2)
2015
RTCC : Detecting Trait Clustering in Environmental Gradients (Version 0.1.1)
2020
RTMB : 'R' Bindings for 'TMB' (Version 1.8)
2023
RTL : Risk Tool Library - Trading, Risk, Analytics for Commodities (Version 1.3.7)
2020
RVCompare : Compare Real Valued Random Variables (Version 0.1.8)
2021
RWDataPlyr : Read and Manipulate Data from 'RiverWare' (Version 0.6.6)
2018
RWNN : Random Weight Neural Networks (Version 0.4)
2024
RZigZag : Zig-Zag Sampler (Version 0.2.1)
2017
Racmacs : Antigenic Cartography Macros (Version 1.2.9)
2023
RadEro : Cs-137 Conversion Model (Version 1.0.8)
2024
Radviz : Project Multidimensional Data in 2D Space (Version 0.9.5)
2016
Rankcluster : Model-Based Clustering for Multivariate Partial Ranking Data (Version 0.98.0)
2013
Rapi : Interface for Multiple Data Providers 'EDDS' and 'FRED' (Version 1.0.6)
2024
RapidFuzz : String Similarity Computation Using 'RapidFuzz' (Version 1.0)
2024
Ravages : Rare Variant Analysis and Genetic Simulations (Version 1.1.3)
2020
RavenR : Raven Hydrological Modelling Framework R Support and Analysis (Version 2.2.4)
2020
Rblpapi : R Interface to 'Bloomberg' (Version 0.3.16)
2015
Rborist
Algorithm : (Version )
0
Rcatch22 : Calculation of 22 Canonical Time-Series Characteristics (Version 0.2.3)
2021
Rcereal : "Cereal Headers for R and C++ Serialization" (Version 1.3.2)
2015
RcppAPT : 'Rcpp' Interface to the APT Package Manager (Version 0.0.10)
2015
RcppAnnoy
Neighbors : (Version )
0
RcppArmadillo
Library : (Version )
0
RcppArray : 'Rcpp' Meets 'C++' Arrays (Version 0.3.0)
2023
RcppBDT : 'Rcpp' Bindings for the Boost Date_Time Library (Version 0.2.7)
2011
RcppBessel : Bessel Functions Rcpp Interface (Version 1.0.0)
2024
RcppBlaze
Library : (Version )
0
RcppCCTZ : 'Rcpp' Bindings for the 'CCTZ' Library (Version 0.2.14)
2015
RcppCGAL : 'Rcpp' Integration for 'CGAL' (Version 6.1)
2021
RcppCNPy : Read-Write Support for 'NumPy' Files via 'Rcpp' (Version 0.2.14)
2012
RcppCWB : 'Rcpp' Bindings for the 'Corpus Workbench' ('CWB') (Version 0.6.10)
2018
RcppClassic : Deprecated 'classic' 'Rcpp' 'API' (Version 0.9.13)
2010
RcppClassicExamples : Examples using 'RcppClassic' to Interface R and C++ (Version 0.1.3)
2012
RcppClock : Seamless 'Rcpp' Benchmarking (Version 1.1)
2021
RcppColMetric : Efficient Column-Wise Metric Computation Against Common Vector (Version 0.1.0)
2025
RcppColors : Color Mappings and 'C++' Header Files for Color Conversion (Version 0.6.0)
2022
RcppDE : Global Optimization by Differential Evolution in C++ (Version 0.1.8)
2010
RcppDPR : 'Rcpp' Implementation of Dirichlet Process Regression (Version 0.1.10)
2025
RcppDate : 'date' C++ Header Library for Date and Time Functionality (Version 0.0.6)
2020
RcppDist : 'Rcpp' Integration of Additional Probability Distributions (Version 0.1.1.1)
2018
RcppDynProg : 'Rcpp' Dynamic Programming (Version 0.2.1)
2019
RcppEigen
Library : (Version )
0
RcppEigenAD : Generate Partial Derivatives using 'Rcpp', 'Eigen' and 'CppAD' (Version 1.1.0)
2018
RcppEnsmallen
'Armadillo' : (Version )
0
RcppExamples : Examples using 'Rcpp' to Interface R and C++ (Version 0.1.10)
2010
RcppFarmHash : Interface to the Google 'FarmHash' Family of Hash Functions (Version 0.0.3)
2021
RcppFastAD : 'Rcpp' Bindings to 'FastAD' Auto-Differentiation (Version 0.0.4)
2023
RcppGSL : 'Rcpp' Integration for 'GNU GSL' Vectors and Matrices (Version 0.3.13)
2010
RcppGetconf : 'Rcpp' Interface for Querying System Configuration Variables (Version 0.0.4)
2016
RcppGreedySetCover : Greedy Set Cover (Version 0.1.1)
2018
RcppHMM : Rcpp Hidden Markov Model (Version 1.2.2.1)
2017
RcppHNSW
Neighbors : (Version )
0
RcppHungarian : Solves Minimum Cost Bipartite Matching Problems (Version 0.3)
2019
RcppJagger : An R Wrapper for Jagger (Version 0.0.2)
2023
RcppLbfgsBlaze : 'L-BFGS' Algorithm Based on 'Blaze' for 'R' and 'Rcpp' (Version 0.1.0)
2024
RcppML : Rcpp Machine Learning Library (Version 0.3.7)
2021
RcppMagicEnum : 'Rcpp' Bindings to 'Magic Enum' 'C++' 'Enum' Support (Version 0.0.1)
2024
RcppMeCab : 'rcpp' Wrapper for 'mecab' Library (Version 0.0.1.2)
2018
RcppMsgPack : 'MsgPack' C++ Header Files and Interface Functions for R (Version 0.2.4)
2017
RcppNLoptExample : 'Rcpp' Package Illustrating Header-Only Access to 'NLopt' (Version 0.0.2)
2018
RcppNumerical : 'Rcpp' Integration for Numerical Computing Libraries (Version 0.6-0)
2016
RcppParallel : Parallel Programming Tools for 'Rcpp' (Version 5.1.11-1)
2014
RcppPlanc : Parallel Low-Rank Approximation with Nonnegativity Constraints (Version 2.0.13)
2025
RcppQuantuccia : R Bindings to the Calendaring Functionality of 'QuantLib' (Version 0.1.4)
2017
RcppRedis : 'Rcpp' Bindings for 'Redis' using the 'hiredis' Library (Version 0.2.6)
2014
RcppRoll : Efficient Rolling / Windowed Operations (Version 0.3.1)
2013
RcppSMC : Rcpp Bindings for Sequential Monte Carlo (Version 0.2.9)
2012
RcppSpdlog : R and C++ Interfaces to 'spdlog' C++ Header Library for Logging (Version 0.0.26)
2020
RcppStreams
Processing : (Version )
0
RcppTN : Rcpp-Based Truncated Normal Distribution RNG and Family (Version 0.2-2)
2017
RcppTOML : 'Rcpp' Bindings to Parser for "Tom's Obvious Markup Language" (Version 0.2.3)
2015
RcppThread : R-Friendly Threading in C++ (Version 2.3.0)
2017
RcppUUID : Generating Universally Unique Identificators (Version 1.2.0)
2020
RcppXPtrUtils : XPtr Add-Ons for 'Rcpp' (Version 0.1.3)
2017
RcppXsimd : Xsimd C++ Header-Only Library Files (Version 7.1.6-1)
2019
RcppXts : Interface the 'xts' API via 'Rcpp' (Version 0.0.6)
2013
RcppZiggurat
Implementations : (Version )
0
Rdimtools : Dimension Reduction and Estimation Methods (Version 1.1.3)
2017
ReAD
Studies : (Version )
0
ReIns : Functions from "Reinsurance: Actuarial and Statistical Aspects" (Version 1.0.15)
2016
ReVAMP : Interface to 'Vamp' Audio Analysis Plugins (Version 1.0.1)
2025
RealVAMS : Multivariate VAM Fitting (Version 0.4-6)
2014
RecAssoRules
Rules : (Version )
0
Recocrop : Estimating Environmental Suitability for Plants (Version 0.4-2)
2021
RespirAnalyzer : Analysis Functions of Respiratory Data (Version 1.0.2)
2021
RestRserve : A Framework for Building HTTP API (Version 1.2.4)
2020
Rfast : A Collection of Efficient and Extremely Fast R Functions (Version 2.1.5.2)
2016
Rfast2 : A Collection of Efficient and Extremely Fast R Functions II (Version 0.1.5.5)
2019
Rfmtool : Fuzzy Measure Tools (Version 5.0.4)
2016
Rfssa : Functional Singular Spectrum Analysis (Version 3.2.0)
2019
Rgof : 1d Goodness of Fit Tests (Version 3.3.0)
2023
RiemBase : Functions and C++ Header Files for Computation on Manifolds (Version 0.2.6)
2018
Riemann : Learning with Data on Riemannian Manifolds (Version 0.1.6)
2020
Rirt
Theory : (Version )
0
Rlabkey : Data Exchange Between R and 'LabKey' Server (Version 3.4.4)
2008
Rlgt : Bayesian Exponential Smoothing Models with Trend Modifications (Version 0.2-3)
2019
Rlinsolve : Iterative Solvers for (Sparse) Linear System of Equations (Version 0.3.3)
2017
RmecabKo : An 'Rcpp' Interface for Eunjeon Project (Version 0.1.6.2)
2017
Rmixmod : Classification with Mixture Modelling (Version 2.1.10)
2012
Rnanoflann : Extremely Fast Nearest Neighbor Search (Version 0.0.3)
2023
RoBTT : Robust Bayesian T-Test (Version 1.3.1)
2022
RobGARCHBoot : Robust Bootstrap Forecast Densities for GARCH Models (Version 1.2.0)
2019
RobKF : Innovative and/or Additive Outlier Robust Kalman Filtering (Version 1.0.2)
2020
RobRegression : Robust Multivariate Regression (Version 0.1.0)
2024
RobustCalibration : Robust Calibration of Imperfect Mathematical Models (Version 0.5.6)
2018
RobustGaSP : Robust Gaussian Stochastic Process Emulation (Version 0.6.8)
2016
Ropj : Import Origin(R) Project Files (Version 0.3-6)
2019
RoughSets : Data Analysis Using Rough Set and Fuzzy Rough Set Theories (Version 1.3-8)
2014
RprobitB : Bayesian Probit Choice Modeling (Version 1.2.0)
2021
Rquefts
Soils : (Version )
0
Rsolnp : General Non-Linear Optimization (Version 2.0.1)
2010
Rtsne
Implementation : (Version )
0
Rvcg : Manipulations of Triangular Meshes Based on the 'VCGLIB' API (Version 0.25)
2014
Rwofost : WOFOST Crop Growth Simulation Model (Version 0.8-7)
2020
Ryacas : R Interface to the 'Yacas' Computer Algebra System (Version 1.1.6)
2007
SAGMM
Models : (Version )
0
SAM : Sparse Additive Modelling (Version 1.1.3)
2012
SAMGEP : A Semi-Supervised Method for Prediction of Phenotype Event Times (Version 0.1.0-1)
2021
SANple : Fitting Shared Atoms Nested Models via Markov Chains Monte Carlo (Version 0.2.0)
2023
SANvi : Fitting Shared Atoms Nested Models via Variational Bayes (Version 0.1.1)
2023
SAR : Smart Adaptive Recommendations (Version 1.0.4)
2019
SBmedian : Scalable Bayes with Median of Subset Posteriors (Version 0.1.2)
2020
SCORNET : Semi-Supervised Calibration of Risk with Noisy Event Times (Version 0.1.1)
2020
SDMtune : Species Distribution Model Selection (Version 1.3.3)
2019
SEERaBomb : SEER and Atomic Bomb Survivor Data Analysis Tools (Version 2019.2)
2012
SELF
Discovery : (Version )
0
SFDesign : Space-Filling Designs (Version 0.1.3)
2025
SGDinference : Inference with Stochastic Gradient Descent (Version 0.1.0)
2023
SGPR
Selection : (Version )
0
SHT : Statistical Hypothesis Testing Toolbox (Version 0.1.9)
2019
SIT : Association Measurement Through Sliced Independence Test (SIT) (Version 0.1.1)
2022
SITH : A Spatial Model of Intra-Tumor Heterogeneity (Version 1.1.0)
2020
SK4FGA : Scott-Knott for Forensic Glass Analysis (Version 0.1.1)
2023
SKFCPD : Fast Online Changepoint Detection for Temporally Correlated Data (Version 0.2.4)
2024
SLGP : Spatial Logistic Gaussian Process for Field Density Estimation (Version 1.0.1)
2025
SLOPE : Sorted L1 Penalized Estimation (Version 1.2.0)
2015
SLmetrics : Machine Learning Performance Evaluation on Steroids (Version 0.3-4)
2025
SMASH : Subclone Multiplicity Allocation and Somatic Heterogeneity (Version 1.0.0)
2025
SMR : Externally Studentized Midrange Distribution (Version 2.1.0)
2012
SMUT : Multi-SNP Mediation Intersection-Union Test (Version 1.1)
2018
SNSeg
Series : (Version )
0
SPSP : Selection by Partitioning the Solution Paths (Version 0.2.0)
2021
SPlit : Split a Dataset for Training and Testing (Version 1.3)
2021
SSOSVM : Stream Suitable Online Support Vector Machines (Version 0.2.2)
2019
STARTS : Functions for the STARTS Model (Version 1.3-8)
2017
STARTdesign
Trials : (Version )
0
SVDNF : Discrete Nonlinear Filtering for Stochastic Volatility Models (Version 0.1.11)
2022
SVG
Transcriptomics : (Version )
0
ScaleSpikeSlab : Scalable Spike-and-Slab (Version 1.0)
2022
Scalelink : Create Scale Linkage Scores (Version 1.0-2)
2019
ScatterDensity : Density Estimation and Visualization of 2D Scatter Plots (Version 0.1.1)
2023
SelectBoost.gamlss
Models : (Version )
0
SelfControlledCaseSeries : Self-Controlled Case Series (Version 6.1.1)
2025
SensIAT : Sensitivity Analysis for Irregular Assessment Times (Version 0.3.0)
2024
SeqKat : Detection of Kataegis (Version 0.0.8)
2017
Seurat : Tools for Single Cell Genomics (Version 5.4.0)
2017
SeuratObject : Data Structures for Single Cell Data (Version 5.3.0)
2021
SheetReader : Parse xlsx Files (Version 1.2.1)
2022
ShrinkCovMat : Shrinkage Covariance Matrix Estimators (Version 2.1.0)
2014
ShrinkageTrees : Regression Trees with Shrinkage Priors (Version 1.0.2)
2025
SiFINeT : Single Cell Feature Identification with Network Topology (Version 1.13)
2025
SiPhyNetwork : A Phylogenetic Simulator for Reticulate Evolution (Version 1.1.0)
2022
Sieve : Nonparametric Estimation by the Method of Sieves (Version 2.1)
2022
Signac : Analysis of Single-Cell Chromatin Data (Version 1.16.0)
2020
SimBIID : Simulation-Based Inference Methods for Infectious Disease Models (Version 0.2.2)
2019
SimJoint : Simulate Joint Distribution (Version 0.3.12)
2019
SimReg : Similarity Regression (Version 3.4)
2015
SimSurvNMarker : Simulate Survival Time and Markers (Version 0.1.3)
2020
SimTOST
Simulation : (Version )
0
SmartSVA : Fast and Robust Surrogate Variable Analysis (Version 0.1.3)
2016
Sobol4R : Sobol Indices for Models with Fixed and Stochastic Parameters (Version 0.4.0)
2025
SoftBart : Implements the SoftBart Algorithm (Version 1.0.3)
2022
SoyNAM : Soybean Nested Association Mapping Dataset (Version 1.6.2)
2015
SpaCCI : Spatially Aware Cell-Cell Interaction Analysis (Version 1.0.4)
2024
SpaTopic
Images : (Version )
0
SpaceTimeBSS : Blind Source Separation for Multivariate Spatio-Temporal Data (Version 0.4-0)
2022
SparseICA : Sparse Independent Component Analysis (Version 0.1.4)
2025
SparseLPM
Data : (Version )
0
SpatMCA : Regularized Spatial Maximum Covariance Analysis (Version 1.0.7)
2016
SpatPCA : Regularized Principal Component Analysis for Spatial Data (Version 1.3.8)
2015
SpatialBSS : Blind Source Separation for Multivariate Spatial Data (Version 0.16-0)
2020
SpatialEpi : Methods and Data for Spatial Epidemiology (Version 1.2.8)
2012
SpatialTools : Tools for Spatial Data Analysis (Version 1.0.5)
2011
Spbsampling : Spatially Balanced Sampling (Version 1.3.5)
2018
SplitGLM : Split Generalized Linear Models (Version 1.0.6)
2021
SplitReg : Split Regularized Regression (Version 1.0.3)
2019
Sshaped : Nonparametric, Tuning-Free Estimation of S-Shaped Functions (Version 1.2)
2021
StMoSim : Quantile-Quantile Plot with Several Gaussian Simulations (Version 3.2.0)
2010
StanHeaders : C++ Header Files for Stan (Version 2.32.10)
2015
StanMoMo : Bayesian Mortality Modelling with 'Stan' (Version 1.2.0)
2021
StatRec
Problems : (Version )
0
StealLikeBayes : A Compendium of Bayesian Statistical Routines Written in 'C++' (Version 1.0)
2025
StempCens
Responses : (Version )
0
StereoMorph : Stereo Camera Calibration and Reconstruction (Version 1.6.7)
2014
StochBlock : Stochastic Blockmodeling of One-Mode and Linked Networks (Version 0.1.5)
2023
StratifiedSampling : Different Methods for Stratified Sampling (Version 0.4.2)
2021
StuteTest : Stute (1997) Linearity Test (Version 1.0.2)
2024
SubTite : Subgroup Specific Optimal Dose Assignment (Version 4.0.5)
2017
SuperGauss
Series : (Version )
0
SuperRanker : Sequential Rank Agreement (Version 1.2.1)
2016
SuperpixelImageSegmentation : Superpixel Image Segmentation (Version 1.0.6)
2018
SurrogateBMA
Averaging : (Version )
0
SurrogateRegression : Surrogate Outcome Regression Analysis (Version 0.6.0.1)
2020
SurvEval : Methods for the Evaluation of Survival Models (Version 1.1)
2024
SurvivalClusteringTree : Clustering Analysis Using Survival Tree and Forest Algorithms (Version 1.1.1)
2023
T4cluster : Tools for Cluster Analysis (Version 0.1.4)
2020
T4transport : Tools for Computational Optimal Transport (Version 0.1.8)
2020
TAM : Test Analysis Modules (Version 4.3-25)
2013
TCHazaRds : Tropical Cyclone (Hurricane, Typhoon) Spatial Hazard Modelling (Version 1.1.5)
2024
TDA : Statistical Tools for Topological Data Analysis (Version 1.9.4)
2021
TDAkit : Toolkit for Topological Data Analysis (Version 0.1.3)
2021
TDApplied : Machine Learning and Inference for Topological Data Analysis (Version 3.0.4)
2022
TDAstats : Pipeline for Topological Data Analysis (Version 0.4.1)
2018
TDAvec : Vector Summaries of Persistence Diagrams (Version 0.1.41)
2022
TFMPvalue
Matrices : (Version )
0
TFRE
Regression : (Version )
0
TLMoments : Calculate TL-Moments and Convert Them to Distribution Parameters (Version 0.7.5.3)
2017
TMTI : Too Many, Too Improbable (TMTI) Test Procedures (Version 1.0.3)
2021
TSDFGS : Training Set Determination for Genomic Selection (Version 2.0)
2019
TSLA : Tree-Guided Rare Feature Selection and Logic Aggregation (Version 0.1.2)
2025
TSrepr : Time Series Representations (Version 1.1.0)
2018
TTR.PGM : Thornley Transport Resistance Plant Growth Model (Version 1.0.0)
2025
TapeS : Tree Taper Curves and Sorting Based on 'TapeR' (Version 0.14.1)
2023
TauStar
Covariance : (Version )
0
TensorMCMC : Tensor Regression with Stochastic Low-Rank Updates (Version 0.1.0)
2026
TensorClustering : Model-Based Tensor Clustering (Version 1.0.2)
2021
TestCor
Tests : (Version )
0
TestDesign
Construction : (Version )
0
TestsSymmetry : Tests for Symmetry when the Center of Symmetry is Unknown (Version 1.0.0)
2024
TexExamRandomizer : Personalizes and Randomizes Exams Written in 'LaTeX' (Version 1.2.7)
2017
TiPS : Trajectories and Phylogenies Simulator (Version 1.3.0)
2021
Transition
Studies : (Version )
0
TreeBUGS : Hierarchical Multinomial Processing Tree Modeling (Version 1.5.3)
2016
TreeDimensionTest : Trajectory Presence and Heterogeneity in Multivariate Data (Version 0.0.2)
2022
TreeDist : Calculate and Map Distances Between Phylogenetic Trees (Version 2.11.1)
2020
TreeSearch : Phylogenetic Analysis with Discrete Character Data (Version 1.7.0)
2017
TreeTools : Create, Modify and Analyse Phylogenetic Trees (Version 2.0.0)
2019
TriDimRegression : Bayesian Statistics for 2D/3D Transformations (Version 1.0.3)
2021
TrialEmulation : Causal Analysis of Observational Time-to-Event Data (Version 0.0.4.9)
2023
TruncatedNormal : Truncated Multivariate Normal and Student Distributions (Version 2.3)
2015
UComp : Automatic Univariate Time Series Modelling of many Kinds (Version 5.1.5)
2020
UPCM : Uncertainty in Partial Credit Models (Version 0.0-4)
2021
Umatrix : Visualization of Structures in High-Dimensional Data (Version 4.0.2)
2017
UniExactFunTest : Uniform Exact Functional Tests for Contingency Tables (Version 1.0.1)
2023
UniIsoRegression : Unimodal and Isotonic L1, L2 and Linf Regression (Version 0.0-0)
2017
Upsilon : Another Test of Association for Count Data (Version 0.1.0)
2026
V8 : Embedded JavaScript and WebAssembly Engine for R (Version 8.0.1)
2014
VAJointSurv : Variational Approximation for Joint Survival and Marker Models (Version 0.1.1)
2022
VARtests : Bootstrap Tests for Cointegration and Autocorrelation in VARs (Version 2.0.7)
2017
VBel
Inference : (Version )
0
VCBART
Trees : (Version )
0
VEwaningVariant : Vaccine Efficacy Over Time - Variant Aware (Version 1.4)
2021
VIC5 : The Variable Infiltration Capacity (VIC) Hydrological Model (Version 0.2.6)
2021
VICatMix : Variational Mixture Models for Clustering Categorical Data (Version 1.0)
2024
VIM : Visualization and Imputation of Missing Values (Version 7.0.0)
2012
VMDecomp : Variational Mode Decomposition (Version 1.0.2)
2022
VeccTMVN : Multivariate Normal Probabilities using Vecchia Approximation (Version 1.3.1)
2024
VeryLargeIntegers : Store and Operate with Arbitrarily Large Integers (Version 0.2.1)
2017
WARDEN
EveNts : (Version )
0
WData : Statistical Inference for Weighted Data (Version 0.1.1)
2025
WGCNA : Weighted Correlation Network Analysis (Version 1.73)
2010
WH : Enhanced Implementation of Whittaker-Henderson Smoothing (Version 2.0.0)
2023
WOAkMedoids : Whale Optimization Algorithm for K-Medoids Clustering (Version 0.1.0)
2024
WPKDE : Weighted Piecewise Kernel Density Estimation (Version 1.0)
2017
WRI : Wasserstein Regression and Inference (Version 0.2.1)
2020
WaveSampling : Weakly Associated Vectors (WAVE) Sampling (Version 0.1.4)
2019
Waypoint
Waypoints : (Version )
0
WebGestaltR : Gene Set Analysis Toolkit WebGestaltR (Version 0.4.6)
2017
WeibullR : Weibull Analysis for Reliability Engineering (Version 1.2.4)
2018
WeightedTreemaps
Data : (Version )
0
WinRatio : Win Ratio for Prioritized Outcomes and 95% Confidence Interval (Version 1.0)
2020
WpProj : Linear p-Wasserstein Projections (Version 0.2.3)
2024
XDNUTS
Length : (Version )
0
XYomics : Analysis of Sex Differences in Omics Data for Complex Diseases (Version 0.1.3)
2025
YPPE
Distribution : (Version )
0
ZIPBayes : Bayesian Methods in the Analysis of Zero-Inflated Poisson Model (Version 1.0.2)
2021
ZVCV : Zero-Variance Control Variates (Version 2.1.3)
2019
aRtsy : Generative Art with 'ggplot2' (Version 1.0.1)
2021
abclass : Angle-Based Classification (Version 0.5.1)
2022
abcrf : Approximate Bayesian Computation via Random Forests (Version 2.0)
2015
aberrance : Detect Aberrant Behavior in Test Data (Version 0.3.0)
2024
abess : Fast Best Subset Selection (Version 0.4.11)
2021
abn : Modelling Multivariate Data with Additive Bayesian Networks (Version 3.1.13)
2011
abseil : 'C++' Header Files from 'Abseil' (Version 2023.8.2.1)
2023
abtest : Bayesian A/B Testing (Version 1.0.1)
2019
acc : Exploring Accelerometer Data (Version 1.3.3)
2015
accelerometry : Functions for Processing Accelerometer Data (Version 3.1.2)
2013
acebayes : Optimal Bayesian Experimental Design using the ACE Algorithm (Version 1.11)
2016
adaR : A Fast 'WHATWG' Compliant URL Parser (Version 0.3.4)
2023
adapt3 : Adaptive Dynamics and Community Matrix Model Projections (Version 1.0.1)
2025
adaptIVPT : Adaptive Bioequivalence Design for In-Vitro Permeation Tests (Version 1.1.0)
2022
adelie : Group Lasso and Elastic Net Solver for Generalized Linear Models (Version 1.0.8)
2024
adheRenceRX : Assess Medication Adherence from Pharmaceutical Claims Data (Version 1.0.0)
2020
adjSURVCI
Data : (Version )
0
adjclust
Matrix : (Version )
0
admix : Package Admix for Admixture (aka Contamination) Models (Version 2.5.2)
2021
adpss
Designs : (Version )
0
aftgee
Equations : (Version )
0
aftsem : Semiparametric Accelerated Failure Time Model (Version 1.0)
2024
agcounts : Calculate 'ActiGraph' Counts from Accelerometer Data (Version 0.6.6)
2024
aifeducation : Artificial Intelligence for Education (Version 1.1.3)
2023
aihuman
Decision-Making : (Version )
0
alakazam : Immunoglobulin Clonal Lineage and Diversity Analysis (Version 1.4.2)
2016
alcyon : Spatial Network Analysis (Version 0.8.1)
2024
alien : Estimate Invasive and Alien Species (IAS) Introduction Rates (Version 1.0.2)
2024
alpaca : Fit GLM's with High-Dimensional k-Way Fixed Effects (Version 0.3.5)
2018
alphabetr
Cells : (Version )
0
alqrfe : Adaptive Lasso Quantile Regression with Fixed Effects (Version 1.3)
2022
alternativeROC : Alternative and Fast ROC Analysis (Version 1.0.4)
2025
ambit : Simulation and Estimation of Ambit Processes (Version 0.1.2)
2022
ampir : Predict Antimicrobial Peptides (Version 1.1.0)
2019
amsSim : Adaptive Multilevel Splitting for Option Simulation and Pricing (Version 0.1.0)
2025
anMC : Compute High Dimensional Orthant Probabilities (Version 0.2.5)
2017
aniSNA : Statistical Network Analysis of Animal Social Networks (Version 1.1.1)
2023
anomaly : Detecting Anomalies in Data (Version 4.3.3)
2018
anytime : Anything to 'POSIXct' or 'Date' Converter (Version 0.3.12)
2016
aorsf : Accelerated Oblique Random Forests (Version 0.1.6)
2022
apcf : Adapted Pair Correlation Function (Version 0.3.3)
2019
apcluster : Affinity Propagation Clustering (Version 1.4.14)
2010
ape : Analyses of Phylogenetics and Evolution (Version 5.8-1)
2002
aphid : Analysis with Profile Hidden Markov Models (Version 1.3.5)
2017
apollo : Tools for Choice Model Estimation and Application (Version 0.3.6)
2019
approxOT : Approximate and Exact Optimal Transport Methods (Version 1.2)
2022
aricode
Measures : (Version )
0
armspp : Adaptive Rejection Metropolis Sampling (ARMS) via 'Rcpp' (Version 0.0.3)
2019
arrApply : Apply a Function to a Margin of an Array (Version 2.2.1)
2016
ashr : Methods for Adaptive Shrinkage, using Empirical Bayes (Version 2.2-63)
2016
asmbPLS
Data : (Version )
0
aspline : Spline Regression with Adaptive Knot Selection (Version 0.2.0)
2021
asteRisk : Computation of Satellite Position (Version 1.4.5)
2021
atakrig : Area-to-Area Kriging (Version 0.9.8.2)
2020
aum : Area Under Minimum of False Positives and Negatives (Version 2024.6.19)
2022
autoFRK : Automatic Fixed Rank Kriging (Version 1.4.4)
2018
autothresholdr : An R Port of the 'ImageJ' Plugin 'Auto Threshold' (Version 1.4.3)
2017
avar : Allan Variance (Version 0.1.3)
2019
bWGR : Bayesian Whole-Genome Regression (Version 2.2.17)
2015
backbone : Extracts the Backbone from Networks (Version 3.0.3)
2019
baclava
Augmentation : (Version )
0
baggingbwsel
Estimation : (Version )
0
baggr : Bayesian Aggregate Treatment Effects (Version 0.7.11)
2019
bakR : Analyze and Compare Nucleotide Recoding RNA Sequencing Datasets (Version 1.0.1)
2022
bama : High Dimensional Bayesian Mediation Analysis (Version 1.3.1)
2019
baldur : Bayesian Hierarchical Modeling for Label-Free Proteomics (Version 0.0.4)
2023
banditpam : Almost Linear-Time k-Medoids Clustering (Version 1.0-2)
2023
bartXViz : Visualization of BART and BARP using SHAP (Version 1.0.9)
2025
bartcs : Bayesian Additive Regression Trees for Confounder Selection (Version 1.3.0)
2022
basad : Bayesian Variable Selection with Shrinking and Diffusing Priors (Version 0.3.0)
2017
baseballr : Acquiring and Analyzing Baseball Data (Version 1.6.0)
2022
baskexact : Analytical Calculation of Basket Trial Operating Characteristics (Version 1.0.1)
2021
batchmix
Correction : (Version )
0
batman
Logicals : (Version )
0
bayMDS : Bayesian Multidimensional Scaling and Choice of Dimension (Version 2.1)
2021
bayes4psy : User Friendly Bayesian Data Analysis for Psychology (Version 1.2.13)
2019
bayesCureRateModel : Bayesian Cure Rate Modeling for Time-to-Event Data (Version 1.6)
2024
bayesEO : Bayesian Smoothing of Remote Sensing Image Classification (Version 0.2.2)
2024
bayesImageS : Bayesian Methods for Image Segmentation using a Potts Model (Version 0.7-0)
2016
bayesPO : Bayesian Inference for Presence-Only Data (Version 0.5.0)
2021
bayesQRsurvey
Analysis : (Version )
0
bayesSSM : Bayesian Methods for State Space Models (Version 0.7.1)
2025
bayesZIB : Bayesian Zero-Inflated Bernoulli Regression Model (Version 0.0.5)
2021
bayesdfa : Bayesian Dynamic Factor Analysis (DFA) with 'Stan' (Version 1.3.4)
2018
bayesforecast : Bayesian Time Series Modeling with Stan (Version 1.0.5)
2021
bayesianVARs : MCMC Estimation of Bayesian Vectorautoregressions (Version 0.1.5)
2024
bayeslist : Bayesian Analysis of List Experiments with Prior Information (Version 0.0.1.6)
2024
bayesm : Bayesian Inference for Marketing/Micro-Econometrics (Version 3.1-7)
2005
bayesmove : Non-Parametric Bayesian Analyses of Animal Movement (Version 0.2.4)
2020
bbdetection : Identification of Bull and Bear States of the Market (Version 1.0)
2021
bbknnR : Perform Batch Balanced KNN in R (Version 2.0.2)
2022
bbl : Boltzmann Bayes Learner (Version 1.0.0)
2019
bbmix : Bayesian Model for Genotyping using RNA-Seq (Version 1.0.0)
2023
bcf : Causal Inference using Bayesian Causal Forests (Version 2.0.2)
2018
bcpa : Behavioral Change Point Analysis of Animal Movement (Version 1.3.2)
2013
bdsm : Bayesian Dynamic Systems Modeling (Version 0.3.0)
2025
bea.R : Bureau of Economic Analysis API (Version 1.0.6)
2016
beam : Fast Bayesian Inference in Large Gaussian Graphical Models (Version 2.0.4)
2018
beastt
Trials : (Version )
0
belg : Boltzmann Entropy of a Landscape Gradient (Version 1.5.3)
2018
bellreg : Count Regression Models Based on the Bell Distribution (Version 0.0.2.2)
2020
betaBayes : Bayesian Beta Regression (Version 1.0.1)
2021
bespatial : Boltzmann Entropy for Spatial Data (Version 0.1.3)
2024
bennu : Bayesian Estimation of Naloxone Kit Number Under-Reporting (Version 0.3.2)
2023
beyondWhittle : Bayesian Spectral Inference for Time Series (Version 1.3.0)
2017
bfast : Breaks for Additive Season and Trend (Version 1.7.1)
2009
bigmemory
Files : (Version )
0
bigreadr : Read Large Text Files (Version 0.2.5)
2018
bigrquerystorage : An Interface to Google's 'BigQuery Storage' API (Version 1.2.2)
2024
bigsnpr : Analysis of Massive SNP Arrays (Version 1.12.21)
2017
bigsparser : Sparse Matrix Format with Data on Disk (Version 0.7.3)
2020
bigstatsr : Statistical Tools for Filebacked Big Matrices (Version 1.6.2)
2017
bigtime : Sparse Estimation of Large Time Series Models (Version 0.2.3)
2017
bigutilsr : Utility Functions for Large-scale Data (Version 0.3.11)
2019
binGroup2 : Identification and Estimation using Group Testing (Version 1.3.3)
2020
binaryRL
Tasks : (Version )
0
bindrcpp : An 'Rcpp' Interface to Active Bindings (Version 0.2.3)
2016
binsegRcpp : Efficient Implementation of Binary Segmentation (Version 2025.5.13)
2020
binspp : Bayesian Inference for Neyman-Scott Point Processes (Version 0.2.3)
2022
bio3d : Biological Structure Analysis (Version 2.4-5)
2014
bioacoustics
Vocalizations : (Version )
0
biosensors.usc : Distributional Data Analysis Techniques for Biosensor Data (Version 1.0)
2022
birdie : Bayesian Instrumental Regression for Disparity Estimation (Version 0.7.1)
2024
bistablehistory : Cumulative History Analysis for Bistable Perception Time Series (Version 1.1.3)
2021
biwavelet : Conduct Univariate and Bivariate Wavelet Analyses (Version 0.20.22)
2012
blackbox : Black Box Optimization and Exploration of Parameter Space (Version 1.1.46)
2016
blatent : Bayesian Latent Variable Models (Version 0.1.2)
2020
blavaan : Bayesian Latent Variable Analysis (Version 0.5-10)
2015
blindrecalc : Blinded Sample Size Recalculation (Version 1.1.0)
2020
bliss : Bayesian Functional Linear Regression with Sparse Step Functions (Version 1.1.1)
2019
blockCV
Cross-Validation : (Version )
0
blockmodels
Algorithm : (Version )
0
blorr : Tools for Developing Binary Logistic Regression Models (Version 0.3.1)
2018
blox : Block Diagonal Matrix Approximation (Version 0.0.1)
2025
blvim : Boltzmann–Lotka–Volterra Interaction Model (Version 0.1.1)
2026
bmgarch : Bayesian Multivariate GARCH Models (Version 2.0.0)
2020
bmggum : Bayesian Multidimensional Generalized Graded Unfolding Model (Version 0.1.0)
2021
bmlm : Bayesian Multilevel Mediation (Version 1.3.15)
2016
bmstdr : Bayesian Modeling of Spatio-Temporal Data with R (Version 0.8.2)
2022
bnclassify : Learning Discrete Bayesian Network Classifiers from Data (Version 0.4.8)
2015
bnnSurvival : Bagged k-Nearest Neighbors Survival Prediction (Version 0.1.5)
2016
bonsaiforest : Shrinkage Based Forest Plots (Version 0.1.1)
2024
boodist : Some Distributions from the 'Boost' Library and More (Version 1.0.0)
2023
bootCT : Bootstrapping the ARDL Tests for Cointegration (Version 2.1.0)
2022
bootUR : Bootstrap Unit Root Tests (Version 1.0.4)
2020
borrowr : Estimate Causal Effects with Borrowing Between Data Sources (Version 0.2.0)
2019
bpnreg : Bayesian Projected Normal Regression Models for Circular Data (Version 2.0.3)
2018
bpr : Fitting Bayesian Poisson Regression (Version 1.0.8)
2021
bpvars : Forecasting with Bayesian Panel Vector Autoregressions (Version 1.0)
2025
braggR : Calculate the Revealed Aggregator of Probability Predictions (Version 0.1.1)
2021
bravo : Bayesian Screening and Variable Selection (Version 3.2.2)
2020
breakfast
Estimation : (Version )
0
breathteststan : Stan-Based Fit to Gastric Emptying Curves (Version 0.8.9)
2017
bridgesampling : Bridge Sampling for Marginal Likelihoods and Bayes Factors (Version 1.2-1)
2017
brif : A Tree and Forest Tool for Classification and Regression (Version 1.4.1)
2022
brlrmr : Bias Reduction with Missing Binary Response (Version 0.1.7)
2017
brms.mmrm : Bayesian MMRMs using 'brms' (Version 1.1.1)
2023
brms : Bayesian Regression Models using 'Stan' (Version 2.23.0)
2015
brmsmargins : Bayesian Marginal Effects for 'brms' Models (Version 0.2.1)
2021
broadcast : Broadcasted Array Operations Like 'NumPy' (Version 0.1.7)
2025
bsearchtools : Binary Search Tools (Version 0.0.61)
2016
bsnsing : Build Decision Trees with Optimal Multivariate Splits (Version 1.0.1)
2022
bspline : B-Spline Interpolation and Regression (Version 2.5.0)
2022
bssm
Models : (Version )
0
bsvarSIGNs : Bayesian SVARs with Sign, Zero, and Narrative Restrictions (Version 2.0)
2024
bsvars : Bayesian Estimation of Structural Vector Autoregressive Models (Version 3.2)
2022
bsynth : Bayesian Synthetic Control (Version 1.0)
2024
btb
Geography : (Version )
0
bunsen : Marginal Survival Estimation with Covariate Adjustment (Version 0.1.0)
2025
bvartools
Models : (Version )
0
bvhar : Bayesian Vector Heterogeneous Autoregressive Modeling (Version 2.3.0)
2023
bws : Bayesian Weighted Sums (Version 0.1.0)
2022
bzinb : Bivariate Zero-Inflated Negative Binomial Model Estimator (Version 1.0.8)
2019
c3dr : Read and Write C3D Motion Capture Files (Version 0.2.0)
2025
cIRT : Choice Item Response Theory (Version 1.3.3)
2015
cTMed : Continuous-Time Mediation (Version 1.0.8)
2024
calba : Efficient Neighborhood Basal Area Metrics for Trees (Version 0.1.2)
2025
calculus : High Dimensional Numerical and Symbolic Calculus (Version 1.1.0)
2019
calibrationband : Calibration Bands (Version 0.2.1)
2022
capr : Covariate Assisted Principal Regression (Version 0.2.0)
2026
carSurv : Correlation-Adjusted Regression Survival (CARS) Scores (Version 1.0.0)
2018
carat : Covariate-Adaptive Randomization for Clinical Trials (Version 2.2.1)
2020
cartography : Thematic Cartography (Version 3.1.5)
2015
castor : Efficient Phylogenetics on Large Trees (Version 1.8.5)
2017
catSurv : Computerized Adaptive Testing for Survey Research (Version 1.6.0)
2017
catlearn : Formal Psychological Models of Categorization and Learning (Version 1.1)
2016
catsim : Binary and Categorical Image Similarity Index (Version 0.2.4)
2020
causalDT : Causal Distillation Trees (Version 1.0.0)
2025
causalOT : Optimal Transport Weights for Causal Inference (Version 1.0.2)
2022
cbbinom : Continuous Analog of a Beta-Binomial Distribution (Version 0.2.0)
2024
cbinom : Continuous Analog of a Binomial Distribution (Version 1.6)
2018
cbq : Conditional Binary Quantile Models (Version 0.2.0.4)
2020
ccaPP : (Robust) Canonical Correlation Analysis via Projection Pursuit (Version 0.3.5)
2012
cccp : Cone Constrained Convex Problems (Version 0.3-3)
2015
ccrtm : Coupled Chain Radiative Transfer Models (Version 0.1.6)
2021
cctools
Estimation : (Version )
0
cellWise : Analyzing Data with Cellwise Outliers (Version 2.5.5)
2016
cenROC : Estimating Time-Dependent ROC Curve and AUC for Censored Data (Version 2.0.0)
2020
cfbfastR : Access College Football Play by Play Data (Version 2.0.0)
2021
cglm : Fits Conditional Generalized Linear Models (Version 1.1)
2018
changepointGA : Changepoint Detection via Modified Genetic Algorithm (Version 0.1.3)
2025
changepoints : A Collection of Change-Point Detection Methods (Version 1.1.0)
2021
chillR
Trees : (Version )
0
chopthin : The Chopthin Resampler (Version 0.2.2)
2015
chouca : A Stochastic Cellular Automaton Engine (Version 0.1.99)
2024
cifmodeling
Risks : (Version )
0
circlus : Clustering and Simulation of Spherical Cauchy and PKBD Models (Version 0.0.2)
2024
circumplex : Analysis and Visualization of Circular Data (Version 1.0.2)
2018
ciu : Contextual Importance and Utility (Version 0.8)
2020
cladoRcpp : C++ Implementations of Phylogenetic Cladogenesis Calculations (Version 0.15.1)
2013
cld2 : Google's Compact Language Detector 2 (Version 1.2.6)
2017
cld3 : Google's Compact Language Detector 3 (Version 1.6.1)
2017
clevr : Clustering and Link Prediction Evaluation in R (Version 0.1.2)
2020
clhs : Conditioned Latin Hypercube Sampling (Version 0.9.2)
2012
clifford : Arbitrary Dimensional Clifford Algebras (Version 1.1-3)
2020
clogitboost : Boosting Conditional Logit Model (Version 1.1)
2015
cloneRate : Estimate Growth Rates from Phylogenetic Trees (Version 0.2.3)
2023
clubpro : Classification Using Binary Procrustes Rotation (Version 0.6.2)
2023
clusrank : Wilcoxon Rank Tests for Clustered Data (Version 1.0-4)
2015
clustAnalytics : Cluster Evaluation on Graphs (Version 0.5.5)
2022
clusterGGM : Sparse Gaussian Graphical Modeling with Variable Clustering (Version 0.1.1)
2025
clusterMI : Cluster Analysis with Missing Values by Multiple Imputation (Version 1.5)
2024
clustermq
PBS/Torque) : (Version )
0
clustord : Cluster Ordinal Data via Proportional Odds or Ordered Stereotype (Version 1.3.4)
2025
clustur : Clustering (Version 0.1.4)
2024
cmstatrExt : More Statistical Methods for Composite Material Data (Version 0.4.0)
2024
cna : Causal Modeling with Coincidence Analysis (Version 4.0.3)
2014
cnaOpt
Modeling : (Version )
0
cnum : Chinese Numerals Processing (Version 0.1.5)
2020
coala : A Framework for Coalescent Simulation (Version 0.7.2)
2015
cobin
Data : (Version )
0
coconots : Convolution-Closed Models for Count Time Series (Version 2.0.2)
2023
cocons
Modeling : (Version )
0
coda.base : A Basic Set of Functions for Compositional Data Analysis (Version 1.0.3)
2017
coga : Convolution of Gamma Distributions (Version 1.2.2)
2017
coglasso
Reconstruction : (Version )
0
collapse : Advanced and Fast Data Transformation (Version 2.1.6)
2020
colorednoise : Simulate Temporally Autocorrelated Populations (Version 1.1.2)
2017
colourvalues : Assigns Colours to Values (Version 0.3.11)
2018
comat : Creates Co-Occurrence Matrices of Spatial Data (Version 0.9.6)
2019
combinIT : A Combined Interaction Test for Unreplicated Two-Way Tables (Version 2.0.1)
2022
combiter : Combinatorics Iterators (Version 1.0.3)
2016
comets : Covariance Measure Tests for Conditional Independence (Version 0.2-2)
2024
comparator : Comparison Functions for Clustering and Record Linkage (Version 0.1.4)
2020
compas : Conformational Manipulations of Protein Atomic Structures (Version 0.1.1)
2018
comperank : Ranking Methods for Competition Results (Version 0.1.1)
2018
conStruct
Structure : (Version )
0
coneproj
Regression : (Version )
0
conleyreg : Estimations using Conley Standard Errors (Version 0.1.9)
2021
conquer : Convolution-Type Smoothed Quantile Regression (Version 1.3.3)
2020
conquestr : An R Package to Extend 'ACER ConQuest' (Version 1.5.5)
2019
contoureR : Contouring of Non-Regular Three-Dimensional Data (Version 1.0.5)
2015
cooltools : Practical Tools for Scientific Computations and Visualizations (Version 2.18)
2022
copCAR : Fitting the copCAR Regression Model for Discrete Areal Data (Version 2.0-4)
2014
cophescan : Adaptation of the Coloc Method for PheWAS (Version 1.4.2)
2023
copre : Tools for Nonparametric Martingale Posterior Sampling (Version 0.2.2)
2022
cord : Community Estimation in G-Models via CORD (Version 0.2.0)
2015
corels
Learner : (Version )
0
corpustools : Managing, Querying and Analyzing Tokenized Text (Version 0.5.2)
2017
corrselect : Correlation-Based and Model-Based Predictor Pruning (Version 3.1.0)
2025
cosimmr : Fast Fitting of Stable Isotope Mixing Models with Covariates (Version 1.0.12)
2024
countSTAR : Flexible Modeling of Count Data (Version 1.0.2)
2023
countsplit : Splitting a Count Matrix into Independent Folds (Version 4.0.0)
2023
couplr : Optimal Pairing and Matching via Linear Assignment (Version 1.0.10)
2026
coveffectsplot : Produce Forest Plots to Visualize Covariate Effects (Version 1.0.7)
2018
covglasso : Sparse Covariance Matrix Estimation (Version 1.0.3)
2020
cpop : Detection of Multiple Changes in Slope in Univariate Time-Series (Version 1.0.8)
2022
cpp11 : A C++11 Interface for R's C Interface (Version 0.5.3)
2020
cppRouting
Problem : (Version )
0
cppSim : Fast and Memory Efficient Spatial Interaction Models (Version 0.2)
2025
cppcontainers : 'C++' Standard Template Library Containers (Version 1.0.5)
2024
cpr : Control Polygon Reduction (Version 0.4.1)
2017
cqrReg : Quantile, Composite Quantile Regression and Regularized Versions (Version 1.2.1)
2014
cramer
Two-Sample-Problem : (Version )
0
crandep : Network Analysis of Dependencies of CRAN Packages (Version 0.3.13)
2020
crctStepdown : Univariate Analysis of Cluster Trials with Multiple Outcomes (Version 0.5.2)
2021
creditr : Credit Default Swaps (Version 0.6.2)
2015
crownsegmentr : Tree Crown Segmentation in Airborne LiDAR Point Clouds (Version 1.0.1)
2025
cstab
Instability : (Version )
0
ctgt : Closed Testing with Globaltest for Pathway Analysis (Version 2.0.1)
2020
ctsem : Continuous Time Structural Equation Modelling (Version 3.10.5)
2015
cubature : Adaptive Multivariate Integration over Hypercubes (Version 2.1.4-1)
2009
cuda.ml : R Interface for the RAPIDS cuML Suite of Libraries (Version 0.3.2)
2021
curstatCI : Confidence Intervals for the Current Status Model (Version 0.1.1)
2017
curveDepth : Tukey Curve Depth and Distance in the Space of Curves (Version 0.1.0.16)
2019
cvLM : Cross-Validation for Linear & Ridge Regression Models (Version 1.0.4)
2024
cxxfunplus : Extend 'cxxfunction' by Saving the Dynamic Shared Objects (Version 1.0.2)
2012
cytometree : Automated Cytometry Gating and Annotation (Version 2.0.6)
2017
dHSIC : Independence Testing via Hilbert Schmidt Independence Criterion (Version 2.1)
2016
dMrs : Competing Risk in Dependent Net Survival Analysis (Version 1.0.0)
2025
dRiftDM : Estimating (Time-Dependent) Drift Diffusion Models (Version 0.3.1)
2025
dann : Discriminant Adaptive Nearest Neighbor Classification (Version 1.0.2)
2019
dartR.base : Analysing 'SNP' and 'Silicodart' Data - Basic Functions (Version 1.0.7)
2023
dartR.sim : Computer Simulations of 'SNP' Data (Version 0.71)
2023
datafsm : Estimating Finite State Machine Models from Data (Version 0.2.4)
2015
dateutils : Date Utils (Version 0.1.5)
2021
dbmss : Distance-Based Measures of Spatial Structures (Version 2.11-0)
2012
dbnR : Dynamic Bayesian Network Learning and Inference (Version 0.8.0)
2020
dccpp : Fast Computation of Distance Correlations (Version 0.1.0)
2022
dcortools
Analysis : (Version )
0
dcov : A Fast Implementation of Distance Covariance (Version 0.1.1)
2020
dcurver : Utility Functions for Davidian Curves (Version 0.9.3)
2018
ddModel : The Decision Diffusion Model (Version 0.2.9.0)
2025
ddalpha : Depth-Based Classification and Calculation of Data Depth (Version 1.3.16)
2013
ddsPLS : Data-Driven Sparse Partial Least Squares (Version 1.2.1)
2018
decido : Bindings for 'Mapbox' Ear Cutting Triangulation Library (Version 0.4.0)
2018
decorrelate : Decorrelation Projection Scalable to High Dimensional Data (Version 0.1.6.4)
2025
deepSTRAPP : Test for Differences in Diversification Rates over Time (Version 1.0.0)
2026
deepgp : Bayesian Deep Gaussian Processes using MCMC (Version 1.2.0)
2020
deforestable : Classify RGB Images into Forest or Non-Forest (Version 3.1.2)
2022
deform : Spatial Deformation and Dimension Expansion Gaussian Processes (Version 1.0.1)
2023
deformula
Formulas : (Version )
0
denim : Generate and Simulate Deterministic Compartmental Models (Version 1.2.3)
2024
densEstBayes : Density Estimation via Bayesian Inference Engines (Version 1.0-2.2)
2020
densityratio : Distribution Comparison Through Density Ratio Estimation (Version 0.2.2)
2025
depcoeff : Dependency Coefficients (Version 0.1.1)
2020
desla : Desparsified Lasso Inference for Time Series (Version 0.3.1)
2021
detrendr : Detrend Images (Version 0.6.15)
2017
devianLM : Detecting Extremal Values in a Normal Linear Model (Version 1.0.7)
2025
dexter : Data Management and Analysis of Tests (Version 1.7.2)
2017
dfms : Dynamic Factor Models (Version 0.4.0)
2022
dfphase1
Methods) : (Version )
0
dga : Capture-Recapture Estimation using Bayesian Model Averaging (Version 2.0.2)
2015
dggridR : Discrete Global Grids (Version 3.1.1)
2016
diceR : Diverse Cluster Ensemble in R (Version 3.1.0)
2017
diffmatchpatch : String Diff, Match, and Patch Utilities (Version 0.1.0)
2021
dina : Bayesian Estimation of DINA Model (Version 2.0.2)
2015
dipsaus : A Dipping Sauce for Data Analysis and Visualizations (Version 0.3.3)
2019
disbayes : Bayesian Multi-State Modelling of Chronic Disease Burden Data (Version 1.1.0)
2022
disclapmix : Discrete Laplace Mixture Inference using the EM Algorithm (Version 1.7.5)
2012
disclapmix2
Optimisation : (Version )
0
discretefit : Simulated Goodness-of-Fit Tests for Discrete Distributions (Version 0.1.3)
2021
disk.frame : Larger-than-RAM Disk-Based Data Manipulation Framework (Version 0.8.3)
2019
dismo : Species Distribution Modeling (Version 1.3-16)
2010
dissimilarities : Creating, Manipulating, and Subsetting "dist" Objects (Version 0.3.0)
2025
distantia
Analysis : (Version )
0
distops : Usual Operations for Distance Matrices in R (Version 0.1.0)
2024
divDyn : Diversity Dynamics using Fossil Sampling Data (Version 0.8.3)
2018
divent : Entropy Partitioning to Measure Diversity (Version 0.5-3)
2024
diversitree : Comparative 'Phylogenetic' Analyses of Diversification (Version 0.10-1)
2010
divest : Get Images Out of DICOM Format Quickly (Version 1.2.0)
2016
dlib : Allow Access to the 'Dlib' C++ Library (Version 1.0.3.1)
2017
dlmtree : Bayesian Treed Distributed Lag Models (Version 1.1.0)
2024
dng : Distributions and Gradients (Version 0.2.1)
2017
dnn : Deep Neural Network Tools for Probability and Statistic Models (Version 0.0.7)
2024
doc2vec : Distributed Representations of Sentences, Documents and Topics (Version 0.2.2)
2020
dodgr : Distances on Directed Graphs (Version 0.4.3)
2017
dosearch
Sources : (Version )
0
dpcc : Dynamic Programming for Convex Clustering (Version 1.0.0)
2021
dpseg : Piecewise Linear Segmentation by Dynamic Programming (Version 0.1.1)
2020
dqrng : Fast Pseudo Random Number Generators (Version 0.4.1)
2018
dracor : Decode Draco Format 3D Mesh Data (Version 0.2.6)
2020
drake : A Pipeline Toolkit for Reproducible Computation at Scale (Version 7.13.11)
2017
drclust : Simultaneous Clustering and (or) Dimensionality Reduction (Version 0.1.1)
2024
dream : Dynamic Relational Event Analysis and Modeling (Version 1.0.0)
2025
drf : Distributional Random Forests (Version 1.3.0)
2020
drgee : Doubly Robust Generalized Estimating Equations (Version 1.1.10-4)
2013
drugDemand : Drug Demand Forecasting (Version 0.1.3)
2023
dscore : D-Score for Child Development (Version 2.0.0)
2020
dslice : Dynamic Slicing (Version 1.2.2)
2014
dsp : Dynamic Shrinkage Process and Change Point Detection (Version 1.2.0)
2025
dspline : Tools for Computations with Discrete Splines (Version 1.0.3)
2025
dtts : 'data.table' Time-Series (Version 0.1.3)
2022
dvmisc : Convenience Functions, Moving Window Statistics, and Graphics (Version 1.1.4)
2017
dynConfiR : Dynamic Models for Confidence and Response Time Distributions (Version 1.1.1)
2022
dynatop : An Implementation of Dynamic TOPMODEL Hydrological Model in R (Version 0.2.4)
2022
dynmix : Estimation of Dynamic Finite Mixtures (Version 2.2)
2020
dynsbm : Dynamic Stochastic Block Models (Version 0.8)
2017
dynutils : Common Functionality for the 'dynverse' Packages (Version 1.0.12)
2018
e2tree : Explainable Ensemble Trees (Version 0.2.0)
2025
eBsc : "Empirical Bayes Smoothing Splines with Correlated Errors" (Version 4.17)
2020
eDITH : Model Transport of Environmental DNA in River Networks (Version 1.1.0)
2023
eDMA : Dynamic Model Averaging with Grid Search (Version 1.5-4)
2016
eFCM : Exponential Factor Copula Model (Version 1.0)
2025
eNchange : Ensemble Methods for Multiple Change-Point Detection (Version 1.1)
2020
eam : Evidence Accumulation Models (Version 1.0.1)
2026
easyVerification : Ensemble Forecast Verification for Large Data Sets (Version 0.4.5)
2015
ebTobit : Empirical Bayesian Tobit Matrix Estimation (Version 1.0.2)
2023
ebmstate : Empirical Bayes Multi-State Cox Model (Version 0.1.5)
2020
echoice2 : Choice Models with Economic Foundation (Version 0.2.5)
2023
echos : Echo State Networks for Time Series Modeling and Forecasting (Version 1.0.2)
2025
econetwork : Analyzing Ecological Networks (Version 0.7.0)
2019
ecotraj : Ecological Trajectory Analysis (Version 1.2.0)
2021
ecp
Data : (Version )
0
ecr : Evolutionary Computation in R (Version 2.1.1)
2016
eddington : Compute a Cyclist's Eddington Number (Version 4.2.0)
2020
edgemodelr : Local Large Language Model Inference Engine (Version 0.1.4)
2026
effectplots : Effect Plots (Version 0.2.2)
2024
eggCounts : Hierarchical Modelling of Faecal Egg Counts (Version 2.5-1)
2013
eimpute : Efficiently Impute Large Scale Incomplete Matrix (Version 0.2.4)
2020
einsum : Einstein Summation (Version 0.1.2)
2021
elfDistr
Distribution : (Version )
0
elgbd : Empirical Likelihood for General Block Designs (Version 0.9.0)
2024
elmNNRcpp : The Extreme Learning Machine Algorithm (Version 1.0.5)
2018
elo : Ranking Teams by Elo Rating and Comparable Methods (Version 3.0.2)
2017
emBayes : Robust Bayesian Variable Selection via Expectation-Maximization (Version 0.1.6)
2023
emIRT : EM Algorithms for Estimating Item Response Theory Models (Version 0.0.15)
2015
emcAdr : Evolutionary Version of the Metropolis-Hastings Algorithm (Version 1.2)
2025
empichar
Samples : (Version )
0
endogeneity : Recursive Two-Stage Models to Address Endogeneity (Version 2.1.5)
2022
energy : E-Statistics: Multivariate Inference via the Energy of Data (Version 1.7-12)
2004
energymethod : Two-Sample Test of many Functional Means using the Energy Method (Version 1.1)
2025
enerscape : Compute Energy Landscapes (Version 1.2.0)
2021
enmpa : Ecological Niche Modeling using Presence-Absence Data (Version 0.2.2)
2023
enrichit : 'C++' Implementations of Functional Enrichment Analysis (Version 0.1.0)
2025
epinetr : Epistatic Network Modelling with Forward-Time Simulation (Version 0.96)
2020
epiphy : Analysis of Plant Disease Epidemics (Version 0.5.0)
2018
epizootic
Wildlife : (Version )
0
epm : EcoPhyloMapper (Version 1.1.6)
2022
equateMultiple : Equating of Multiple Forms (Version 1.1.3)
2017
eratosthenes : Archaeological Synchronism (Version 0.0.9)
2024
ergMargins : Process Analysis for Exponential Random Graph Models (Version 1.6.1)
2019
ergmito : Exponential Random Graph Models for Small Networks (Version 0.3-2)
2020
ernm : Exponential-Family Random Network Models (Version 1.0.4)
2025
errum : Exploratory Reduced Reparameterized Unified Model Estimation (Version 0.0.4)
2020
eseis : Environmental Seismology Toolbox (Version 0.8.1)
2018
esemifar : Smoothing Long-Memory Time Series (Version 2.0.1)
2021
espadon : Easy Study of Patient DICOM Data in Oncology (Version 1.11.3)
2022
esreg : Joint Quantile and Expected Shortfall Regression (Version 0.6.2)
2017
ess : Efficient Stepwise Selection in Decomposable Models (Version 1.1.2.1)
2017
essHist : The Essential Histogram (Version 1.2.2)
2018
estimatr : Fast Estimators for Design-Based Inference (Version 1.0.6)
2018
ethiodate : Working with Ethiopian Dates (Version 0.3.1)
2025
etm : Empirical Transition Matrix (Version 1.1.2)
2008
eulerr : Area-Proportional Euler and Venn Diagrams with Ellipses (Version 7.0.4)
2016
eummd : Efficient Univariate Maximum Mean Discrepancy (Version 0.2.0)
2023
eurodata : Fast and Easy Eurostat Data Import and Search (Version 1.7.0)
2022
evalR : Evaluation of Unverified Code (Version 0.0.1)
2022
evgam : Generalised Additive Extreme Value Models (Version 1.0.1)
2020
evinf : Inference with Extreme Value Inflated Count Data (Version 0.8.10)
2023
evitaicossa : Antiassociative Algebra (Version 0.0-1)
2024
ewp : An Empirical Model for Underdispersed Count Data (Version 0.1.2)
2024
exactextractr : Fast Extraction from Raster Datasets using Polygons (Version 0.10.1)
2019
exametrika : Test Theory Analysis and Biclustering (Version 1.8.0)
2024
exdex : Estimation of the Extremal Index (Version 1.2.4)
2019
exdqlm : Extended Dynamic Quantile Linear Models (Version 0.2.0)
2021
exif : Read EXIF Metadata from JPEGs (Version 0.1.1)
2015
expSBM : An Exponential Stochastic Block Model for Interaction Lengths (Version 1.3.6)
2019
expectreg : Expectile and Quantile Regression (Version 0.54)
2010
expertsurv : Incorporate Expert Opinion with Parametric Survival Models (Version 1.4.1)
2023
expperm : Computing Expectations and Marginal Likelihoods for Permutations (Version 1.6)
2019
extraDistr : Additional Univariate and Multivariate Distributions (Version 1.10.0.2)
2016
extBatchMarking : Extended Batch Marking Models (Version 1.1.0)
2023
extrememix : Bayesian Estimation of Extreme Value Mixture Models (Version 0.0.1)
2024
exuber : Econometric Analysis of Explosive Time Series (Version 1.1.0)
2018
fad : Factor Analysis for Data (Version 0.9-3)
2020
fastGHQuad : Fast 'Rcpp' Implementation of Gauss-Hermite Quadrature (Version 1.0.1)
2011
fastGLCM : 'GLCM' Texture Features (Version 1.0.3)
2022
fastLogisticRegressionWrap : Fast Logistic Regression Wrapper (Version 1.2.0)
2023
fastLink : Fast Probabilistic Record Linkage with Missing Data (Version 0.6.1)
2017
fastM : Fast Computation of Multivariate M-Estimators (Version 0.0-5)
2014
fastPLS : A Fast Implementation of Partial Least Square (Version 0.2)
2024
fastText
Classification : (Version )
0
fastTextR : An Interface to the 'fastText' Library (Version 2.1.0)
2017
fastVoteR : Efficient Voting Methods for Committee Selection (Version 0.0.1)
2024
fastadi : Self-Tuning Data Adaptive Matrix Imputation (Version 0.1.2)
2022
fastcpd : Fast Change Point Detection via Sequential Gradient Descent (Version 0.16.2)
2023
fasterize : Fast Polygon to Raster Conversion (Version 1.1.0)
2018
fastglm
'RcppEigen' : (Version )
0
fastglmpca : Fast Algorithms for Generalized Principal Component Analysis (Version 0.1-108)
2024
fastkmedoids
FastCLARANS : (Version )
0
fastmit : Fast Mutual Information Based Independence Test (Version 0.1.1)
2019
fastpolicytree : Constructs Policy Trees from Covariate and Reward Data (Version 1.0)
2025
fastpos
Correlation : (Version )
0
fastqq : Faster Generation of Quantile Quantile Plots with Large Samples (Version 0.1.3)
2021
fastshap : Fast Approximate Shapley Values (Version 0.1.1)
2019
fasttreeid : Identifies Parameters in a Tree-Shaped SCM (Version 1.0.1)
2025
fbroc
Curves : (Version )
0
fcaR : Formal Concept Analysis (Version 1.3.0)
2020
fcci : Feldman-Cousins Confidence Intervals (Version 1.0.2)
2021
fcirt : Forced Choice in Item Response Theory (Version 0.2.1)
2022
fclust : Fuzzy Clustering (Version 2.1.3)
2013
fdaMixed : Functional Data Analysis in a Mixed Model Framework (Version 0.6.1)
2011
fdaSP : Sparse Functional Data Analysis Methods (Version 1.1.1)
2023
fdacluster : Joint Clustering and Alignment of Functional Data (Version 0.4.2)
2022
fdaconcur
Data : (Version )
0
fdapace : Functional Data Analysis and Empirical Dynamics (Version 0.6.0)
2016
fdasrvf : Elastic Functional Data Analysis (Version 2.4.2)
2012
fddm : Fast Implementation of the Diffusion Decision Model (Version 1.0-2)
2020
fdesigns : Optimal Experimental Designs for Dynamic/Functional Models (Version 1.2)
2024
fect : Fixed Effects Counterfactual Estimators (Version 2.1.0)
2022
fedmatch : Fast, Flexible, and User-Friendly Record Linkage Methods (Version 2.1.0)
2021
fiberLD : Fiber Length Determination (Version 0.1-8)
2019
fido : Bayesian Multinomial Logistic Normal Regression (Version 1.1.2)
2022
filearray : File-Backed Array for Out-of-Memory Computation (Version 0.2.0)
2021
filling : Matrix Completion, Imputation, and Inpainting Methods (Version 0.2.4)
2017
finalsize : Calculate the Final Size of an Epidemic (Version 0.2.1)
2022
fingerPro : A Comprehensive Package for Sediment Source Unmixing (Version 2.0)
2018
finity : Test for Finiteness of Moments in a Distribution (Version 0.1.5)
2020
fixest : Fast Fixed-Effects Estimations (Version 0.13.2)
2019
flam : Fits Piecewise Constant Models with Data-Adaptive Knots (Version 3.2)
2014
flan : FLuctuation ANalysis on Mutation Models (Version 1.0)
2016
flankr : Implementing Computational Models of Attentional Selectivity (Version 1.2.0)
2025
flexBCF : Fast & Flexible Implementation of Bayesian Causal Forests (Version 1.0.2)
2025
flexCountReg : Estimation of a Variety of Count Regression Models (Version 0.1.1)
2026
flexlsx : Exporting 'flextable' to 'xlsx' Files (Version 0.3.5)
2024
flexpolyline : Flexible Polyline Encoding (Version 0.3.0)
2020
flexsurv : Flexible Parametric Survival and Multi-State Models (Version 2.3.2)
2011
flexurba : Construct Flexible Urban Delineations (Version 0.2.3)
2025
flintyR : Simple and Flexible Tests of Sample Exchangeability (Version 0.1.0)
2021
flipr : Flexible Inference via Permutations in R (Version 0.3.3)
2021
flock : Process Synchronization Using File Locks (Version 0.7)
2016
flps : Fully-Latent Principal Stratification (Version 1.1.0)
2023
flying : Simulation of Bird Flight Range (Version 0.1.3)
2020
fmesher : Triangle Meshes and Related Geometry Tools (Version 0.6.1)
2023
fmrihrf : Hemodynamic Response Functions for fMRI Data Analysis (Version 0.1.0)
2025
fmtr : Easily Apply Formats to Data (Version 1.7.1)
2020
fntl : Numerical Tools for 'Rcpp' and Lambda Functions (Version 0.1.2)
2024
folda : Forward Stepwise Discriminant Analysis with Pillai's Trace (Version 0.2.0)
2024
foreSIGHT : Systems Insights from Generation of Hydroclimatic Timeseries (Version 2.0.0)
2018
forecast : Forecasting Functions for Time Series and Linear Models (Version 9.0.0)
2009
forecastSNSTS : Forecasting for Stationary and Non-Stationary Time Series (Version 1.3-0)
2016
fourierin : Computes Numeric Fourier Integrals (Version 0.2.5)
2016
fpeek : Check Text Files Content at a Glance (Version 0.1.2)
2018
fplot : Automatic Distribution Graphs Using Formulas (Version 1.1.0)
2019
frab : How to Add Two R Tables (Version 0.0-6)
2023
fractional : Vulgar Fractions in R (Version 0.1.3)
2016
fracture : Convert Decimals to Fractions (Version 0.2.2)
2020
frailtyEM : Fitting Frailty Models with the EM Algorithm (Version 1.0.1)
2017
frailtyMMpen : Efficient Algorithm for High-Dimensional Frailty Model (Version 1.2.1)
2023
frechet : Statistical Analysis for Random Objects and Non-Euclidean Data (Version 0.3.0)
2020
free : Flexible Regularized Estimating Equations (Version 1.0.2)
2022
freealg : The Free Algebra (Version 1.1-8)
2019
fromo : Fast Robust Moments (Version 0.2.4)
2016
fst : Lightning Fast Serialization of Data Frames (Version 0.9.8)
2017
fstcore : R Bindings to the 'Fstlib' Library (Version 0.10.0)
2020
funMoDisco : Motif Discovery in Functional Data (Version 1.1.0)
2025
funbootband
Data : (Version )
0
funcharts : Functional Control Charts (Version 1.8.1)
2021
fuser : Fused Lasso for High-Dimensional Regression over Groups (Version 1.0.1)
2017
gKRLS : Generalized Kernel Regularized Least Squares (Version 1.0.4)
2023
gMWT : Generalized Mann-Whitney Type Tests (Version 1.4)
2012
gRain : Bayesian Networks (Version 1.4.5)
2008
gRbase : A Package for Graphical Modelling in R (Version 2.0.3)
2004
gRc
Symmetries : (Version )
0
gRim : Graphical Interaction Models (Version 0.3.4)
2011
galamm : Generalized Additive Latent and Mixed Models (Version 0.4.0)
2023
gamselBayes : Bayesian Generalized Additive Model Selection (Version 2.0-3)
2022
gamstransfer : A Data Interface Between 'GAMS' and R (Version 3.0.8)
2024
ganDataModel : Build a Metric Subspaces Data Model for a Data Source (Version 2.0.1)
2022
ganGenerativeData : Generate Generative Data for a Data Source (Version 2.1.6)
2021
gasper : Graph Signal Processing (Version 1.1.6)
2020
gastempt : Analyzing Gastric Emptying from MRI or Scintigraphy (Version 0.7.0)
2017
gaston : Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models (Version 1.6)
2015
gbeta : Generalized Beta and Beta Prime Distributions (Version 0.1.0)
2020
gcKrig : Analysis of Geostatistical Count Data using Gaussian Copulas (Version 1.1.8)
2016
gctsc : Modeling Count Time Series Data via Gaussian Copula Models (Version 0.1.3)
2025
gdalcubes : Earth Observation Data Cubes from Satellite Image Collections (Version 0.7.3)
2019
gdalraster : Bindings to 'GDAL' (Version 2.4.0)
2023
gdm : Generalized Dissimilarity Modeling (Version 1.6.0-7)
2015
gdpc : Generalized Dynamic Principal Components (Version 1.1.4)
2016
gdtools : Utilities for Graphical Rendering and Fonts Management (Version 0.4.4)
2015
gdverse : Analysis of Spatial Stratified Heterogeneity (Version 1.5.1)
2024
gear : Geostatistical Analysis in R (Version 0.3.4)
2015
geeVerse : A Comprehensive Analysis of High Dimensional Longitudinal Data (Version 0.3.1)
2024
geiger : Analysis of Evolutionary Diversification (Version 2.0.11)
2007
gen3sis : General Engine for Eco-Evolutionary Simulations (Version 1.6.0)
2020
gena : Genetic Algorithm and Particle Swarm Optimization (Version 1.0.0)
2022
genepop : Population Genetic Data Analysis Using Genepop (Version 1.2.11)
2017
genie : Fast, Robust, and Outlier Resistant Hierarchical Clustering (Version 1.0.6)
2016
genieclust
Detection : (Version )
0
genio : Genetics Input/Output Functions (Version 1.1.2)
2019
genodds : Generalised Odds Ratios (Version 1.1.2)
2019
geocmeans
Classification : (Version )
0
geocomplexity : Mitigating Spatial Bias Through Geographical Complexity (Version 0.2.1)
2024
geodiv : Methods for Calculating Gradient Surface Metrics (Version 1.1.0)
2020
geogrid : Turn Geospatial Polygons into Regular or Hexagonal Grids (Version 0.1.2)
2018
geojsonR : A GeoJson Processing Toolkit (Version 1.1.2)
2017
geojsonsf : GeoJSON to Simple Feature Converter (Version 2.0.5)
2018
geomander : Geographic Tools for Studying Gerrymandering (Version 2.5.2)
2021
geometries : Convert Between R Objects and Geometric Structures (Version 0.2.5)
2020
geometry : Mesh Generation and Surface Tessellation (Version 0.5.2)
2005
geommc : Geometric Markov Chain Sampling (Version 0.1.1)
2024
geosphere : Spherical Trigonometry (Version 1.5-20)
2010
geostan : Bayesian Spatial Analysis (Version 0.8.2)
2022
ggdmc : Cognitive Models (Version 0.2.6.2)
2016
ggdist : Visualizations of Distributions and Uncertainty (Version 3.3.3)
2020
ggdmcLikelihood : Likelihood Computation for 'ggdmc' Package (Version 0.2.9.0)
2025
ggdmcModel : Model Builders for 'ggdmc' Package (Version 0.2.9.0)
2025
ggdmcPrior
Distribution : (Version )
0
ggip : Data Visualization for IP Addresses and Networks (Version 0.3.2)
2020
ggiraph : Make 'ggplot2' Graphics Interactive (Version 0.9.3)
2016
ggrepel
'ggplot2' : (Version )
0
ggwordcloud : A Word Cloud Geom for 'ggplot2' (Version 0.6.2)
2018
ghcm : Functional Conditional Independence Testing with the GHCM (Version 3.0.1)
2021
gibasa : An Alternative 'Rcpp' Wrapper of 'MeCab' (Version 1.1.2)
2023
gicf : Penalised Likelihood Estimation of a Covariance Matrix (Version 1.0.1)
2025
gif : Graphical Independence Filtering (Version 0.1.1)
2020
gitear : Client to the 'gitea' API (Version 1.0.0)
2020
gjam : Generalized Joint Attribute Modeling (Version 2.7)
2016
gkmSVM : Gapped-Kmer Support Vector Machine (Version 0.83.0)
2015
gkwdist : Generalized Kumaraswamy Distribution Family (Version 1.1.2)
2025
gkwreg : Generalized Kumaraswamy Regression Models for Bounded Data (Version 2.1.14)
2025
glca : An R Package for Multiple-Group Latent Class Analysis (Version 1.4.2)
2020
glcm
(GLCMs) : (Version )
0
glm.deploy : 'C' and 'Java' Source Code Generator for Fitted Glm Objects (Version 1.0.4)
2018
glmSTARMA : (Double) Generalized Linear Models for Spatio-Temporal Data (Version 1.0.0)
2026
glmmPen
(pGLMM) : (Version )
0
glmmrBase : Generalised Linear Mixed Models in R (Version 1.2.0)
2022
glmmsel : Generalised Linear Mixed Model Selection (Version 1.0.3)
2025
glmnet : Lasso and Elastic-Net Regularized Generalized Linear Models (Version 4.1-10)
2008
globpso : Swarm Intelligence Optimization (Version 1.3.1)
2025
glow : Make Plots that Glow (Version 0.13.0)
2020
gmvjoint : Joint Models of Survival and Multivariate Longitudinal Data (Version 0.4.5)
2022
goat : Gene Set Analysis Using the Gene Set Ordinal Association Test (Version 1.1.3)
2024
gofar : Generalized Co-Sparse Factor Regression (Version 0.1)
2022
goffda : Goodness-of-Fit Tests for Functional Data (Version 0.1.2)
2019
goldfish : Statistical Network Models for Dynamic Network Data (Version 1.6.12)
2022
goldilocks : Goldilocks Adaptive Trial Designs for Time-to-Event Endpoints (Version 0.4.0)
2021
googlePolylines : Encoding Coordinates into 'Google' Polylines (Version 0.8.7)
2018
gpcp : Genomic Prediction of Cross Performance (Version 0.1.0)
2024
gplite : General Purpose Gaussian Process Modelling (Version 0.13.0)
2021
grainscape : Landscape Connectivity, Habitat, and Protected Area Networks (Version 0.5.0)
2019
graphicalEvidence : Graphical Evidence (Version 1.1)
2024
graphicalVAR : Graphical VAR for Experience Sampling Data (Version 0.3.4)
2015
graphlayouts : Additional Layout Algorithms for Network Visualizations (Version 1.2.2)
2019
graphql : A GraphQL Query Parser (Version 1.5.3)
2016
grasps : Groupwise Regularized Adaptive Sparse Precision Solution (Version 0.1.0)
2025
greeks
Volatilities : (Version )
0
greencrab.toolkit : Run 'Stan' Models to Interpret Green Crab Monitoring Assessments (Version 0.2)
2023
gretel : Generalized Path Analysis for Social Networks (Version 0.0.1)
2019
grf : Generalized Random Forests (Version 2.5.0)
2017
gridOT : Approximate Optimal Transport Between Two-Dimensional Grids (Version 1.0.2)
2022
gridtext : Improved Text Rendering Support for 'Grid' Graphics (Version 0.1.5)
2020
grove : Wavelet Functional ANOVA Through Markov Groves (Version 1.1.1)
2017
grpCox
Predictors : (Version )
0
grpSLOPE : Group Sorted L1 Penalized Estimation (Version 0.3.4)
2016
grpsel : Group Subset Selection (Version 1.3.2)
2021
grwat : River Hydrograph Separation and Analysis (Version 0.1)
2022
gsDesign2 : Group Sequential Design with Non-Constant Effect (Version 1.1.7)
2023
gsEasy : Gene Set Enrichment Analysis in R (Version 1.5)
2016
gsaot
Transport : (Version )
0
gscounts : Group Sequential Designs with Negative Binomial Outcomes (Version 0.1-4)
2018
gsignal : Signal Processing (Version 0.3-7)
2021
gsisdecoder : High Efficient Functions to Decode NFL Player IDs (Version 0.0.1)
2020
gtfs2gps : Converting Transport Data from GTFS Format to GPS-Like Records (Version 2.1-3)
2020
gtfsrouter : Routing with 'GTFS' (General Transit Feed Specification) Data (Version 0.1.4)
2019
gwpcormapper : Geographically Weighted Partial Correlation Mapper (Version 0.1.3)
2021
hahmmr : Haplotype-Aware Hidden Markov Model for RNA (Version 1.0.0)
2023
hal9001 : The Scalable Highly Adaptive Lasso (Version 0.4.6)
2020
handwriter : Handwriting Analysis in R (Version 3.2.4)
2021
hans : Haversines are not Slow (Version 0.1)
2019
harmony : Fast, Sensitive, and Accurate Integration of Single Cell Data (Version 1.2.4)
2021
havel : Visualize and Tabulate 'R' Package Dependencies (Version 0.1.2)
2025
hawkes : Hawkes process simulation and calibration toolkit (Version 0.0-4)
2014
hawkesbow : Estimation of Hawkes Processes from Binned Observations (Version 1.0.3)
2021
hbal : Hierarchically Regularized Entropy Balancing (Version 1.2.15)
2023
hbamr : Hierarchical Bayesian Aldrich-McKelvey Scaling via 'Stan' (Version 2.4.4)
2023
hclust1d : Hierarchical Clustering of Univariate (1d) Data (Version 0.1.1)
2023
hdbcp : Bayesian Change Point Detection for High-Dimensional Data (Version 1.0.0)
2024
hdbinseg
Segmentation : (Version )
0
hdflex : High-Dimensional Aggregate Density Forecasts (Version 0.3.2)
2023
hdme : High-Dimensional Regression with Measurement Error (Version 0.6.0)
2018
hdpGLM : Hierarchical Dirichlet Process Generalized Linear Models (Version 1.0.5)
2020
hdtg
Distributions : (Version )
0
heatindex : Calculating Heat Stress (Version 0.0.2)
2025
heatwaveR : Detect Heatwaves and Cold-Spells (Version 0.5.5)
2018
hesim : Health Economic Simulation Modeling and Decision Analysis (Version 0.5.8)
2017
hetGP
Replication : (Version )
0
hexify : Equal-Area Hex Grids on the 'Snyder' 'ISEA' 'Icosahedron' (Version 0.3.8)
2026
hgwrr : Hierarchical and Geographically Weighted Regression (Version 0.6-2)
2022
hhsmm : Hidden Hybrid Markov/Semi-Markov Model Fitting (Version 0.4.2)
2021
hierarchicalSets : Set Data Visualization Using Hierarchies (Version 1.0.4)
2016
highfrequency : Tools for Highfrequency Data Analysis (Version 1.0.3)
2012
highs : 'HiGHS' Optimization Solver (Version 1.12.0-1)
2022
hilbertSimilarity : Hilbert Similarity Index for High Dimensional Data (Version 0.4.4)
2019
hipread : Read Hierarchical Fixed Width Files (Version 0.2.5)
2018
historicalborrowlong : Longitudinal Bayesian Historical Borrowing Models (Version 0.1.0)
2022
hlt : Higher-Order Item Response Theory (Version 1.3.1)
2022
hmcdm : Hidden Markov Cognitive Diagnosis Models for Learning (Version 2.1.3)
2022
hmde : Hierarchical Methods for Differential Equations (Version 1.3.1)
2025
hoopR : Access Men's Basketball Play by Play Data (Version 2.1.0)
2021
hopit
Heterogeneity : (Version )
0
hpa : Distributions Hermite Polynomial Approximation (Version 1.3.3)
2019
hrt : Heteroskedasticity Robust Testing (Version 1.0.2)
2021
hsrecombi : Estimation of Recombination Rate and Maternal LD in Half-Sibs (Version 1.0.1)
2020
hsstan : Hierarchical Shrinkage Stan Models for Biomarker Selection (Version 0.8.2)
2019
htetree : Causal Inference with Tree-Based Machine Learning Algorithms (Version 0.1.20)
2023
htsr : Hydro-Meteorology Time-Series (Version 2.1.6)
2020
httpuv : HTTP and WebSocket Server Library (Version 1.6.16)
2013
huge : High-Dimensional Undirected Graph Estimation (Version 1.3.5)
2010
humaniformat : A Parser for Human Names (Version 0.6.0)
2015
humanleague : Synthetic Population Generator (Version 2.3.2)
2017
hunspell : High-Performance Stemmer, Tokenizer, and Spell Checker (Version 3.0.6)
2016
hwep : Hardy-Weinberg Equilibrium in Polyploids (Version 2.0.3)
2021
hydrotoolbox
Records : (Version )
0
hyper2 : The Hyperdirichlet Distribution, Mark 2 (Version 3.2)
2017
hypergeo2 : Generalized Hypergeometric Function with Tunable High Precision (Version 0.2.0)
2024
hystar : Fit the Hysteretic Threshold Autoregressive Model (Version 1.0.0)
2023
iAR : Irregularly Observed Autoregressive Models (Version 1.3.2)
2021
iBST : Improper Bagging Survival Tree (Version 1.2)
2017
iCellR : Analyzing High-Throughput Single Cell Sequencing Data (Version 1.7.0)
2019
iDOVE : Durability of Vaccine Efficacy Against SARS-CoV-2 Infection (Version 1.5)
2021
iGraphMatch : Tools for Graph Matching (Version 2.0.5)
2021
iNEXT.3D
Biodiversity : (Version )
0
iNEXT : Interpolation and Extrapolation for Species Diversity (Version 3.0.2)
2015
ibdsegments : Identity by Descent Probability in Pedigrees (Version 1.0.1)
2025
ibdsim2 : Simulation of Chromosomal Regions Shared by Family Members (Version 2.3.2)
2020
ibm : Individual Based Models in R (Version 0.3.0)
2016
ibmcraftr
Disease : (Version )
0
ibs : Integral of B-Spline Functions (Version 1.4)
2014
icRSF : A Modified Random Survival Forest Algorithm (Version 1.2)
2016
icenReg : Regression Models for Interval Censored Data (Version 2.0.16)
2015
iclogcondist : Log-Concave Distribution Estimation with Interval-Censored Data (Version 1.0.1)
2024
icmstate : Interval Censored Multi-State Models (Version 0.2.0)
2024
icosa
Icosahedra : (Version )
0
icr : Compute Krippendorff's Alpha (Version 0.6.6)
2018
idefix : Efficient Designs for Discrete Choice Experiments (Version 1.1.0)
2017
ieTest : Indirect Effects Testing Methods in Mediation Analysis (Version 2.0)
2025
ifit
Information : (Version )
0
igcop : Computational Tools for the IG and IGL Copula Families (Version 1.0.2)
2021
iglm : Regression under Network Interference (Version 1.1)
2025
image.CannyEdges : Implementation of the Canny Edge Detector for Images (Version 0.1.1)
2020
image.CornerDetectionF9 : Find Corners in Digital Images with FAST-9 (Version 0.1.1)
2020
image.CornerDetectionHarris : Implementation of the Harris Corner Detection for Images (Version 0.1.2)
2020
image.LineSegmentDetector : Detect Line Segments in Images (Version 0.1.1)
2020
image.Otsu : Otsu's Image Segmentation Method (Version 0.1.1)
2020
image.binarization : Binarize Images for Enhancing Optical Character Recognition (Version 0.1.3)
2020
image.libfacedetection : Convolutional Neural Network for Face Detection (Version 0.1.1)
2020
imager : Image Processing Library Based on 'CImg' (Version 1.0.8)
2015
imagerExtra : Extra Image Processing Library Based on 'imager' (Version 1.3.2)
2018
imagine
Matrices : (Version )
0
imbibe : A Pipe-Friendly Image Calculator (Version 0.1.1)
2020
immer : Item Response Models for Multiple Ratings (Version 1.5-13)
2015
imp4p : Imputation for Proteomics (Version 1.2)
2016
impactflu : Quantification of Population-Level Impact of Vaccination (Version 0.1.0)
2020
impactr : Mechanical Loading Prediction Through Accelerometer Data (Version 0.4.2)
2021
imputeMulti : Imputation Methods for Multivariate Multinomial Data (Version 0.8.4)
2016
imt : Impact Measurement Toolkit (Version 1.0.0)
2024
imuf : Estimate Orientation of an Inertial Measurement Unit (Version 0.6.0)
2024
imputeTS : Time Series Missing Value Imputation (Version 3.4)
2015
inca : Integer Calibration (Version 0.1.0)
2016
incgraph : Incremental Graphlet Counting for Network Optimisation (Version 1.0.3)
2017
inferCSN : Inferring Cell-Specific Gene Regulatory Network (Version 1.2.0)
2023
inferr : Inferential Statistics (Version 0.3.2)
2017
infocausality : Information-Theoretic Measure of Causality (Version 1.0)
2025
inline : Functions to Inline C, C++, Fortran Function Calls from R (Version 0.3.21)
2007
inplace : In-place Operators for R (Version 0.1.2)
2018
inspectdf : Inspection, Comparison and Visualisation of Data Frames (Version 0.0.12.1)
2019
insight : Easy Access to Model Information for Various Model Objects (Version 1.4.4)
2019
intRinsic : Likelihood-Based Intrinsic Dimension Estimators (Version 1.1.2)
2022
interep : Interaction Analysis of Repeated Measure Data (Version 0.4.1)
2018
interflex : Multiplicative Interaction Models Diagnostics and Visualization (Version 1.2.8)
2017
interleave : Converts Tabular Data to Interleaved Vectors (Version 0.1.2)
2020
interp : Interpolation Methods (Version 1.1-6)
2017
interpolation : Interpolation of Bivariate Functions (Version 0.1.1)
2023
interpolators : Some Interpolation Methods (Version 1.0.1)
2023
intervalaverage : Time-Weighted Averaging for Interval Data (Version 0.8.0)
2020
intervalpsych : Analyzing Interval Data in Psychometrics (Version 0.1.0)
2025
intkrige : A Numerical Implementation of Interval-Valued Kriging (Version 1.0.2)
2019
intmap : Ordered Containers with Integer Keys (Version 1.0.0)
2023
intrinsicFRP : An R Package for Factor Model Asset Pricing (Version 2.1.0)
2023
intsurv : Integrative Survival Modeling (Version 0.3.0)
2019
ionet : Network Analysis for Input-Output Tables (Version 0.2.2)
2024
iotarelr : Iota Inter Coder Reliability for Content Analysis (Version 0.1.7)
2022
ipaddress : Data Analysis for IP Addresses and Networks (Version 1.0.3)
2020
ipft : Indoor Positioning Fingerprinting Toolset (Version 0.7.2)
2017
ipmr : Integral Projection Models (Version 0.0.7)
2021
iprior : Regression Modelling using I-Priors (Version 0.7.4)
2016
ipsecr : Spatially Explicit Capture-Recapture by Inverse Prediction (Version 1.4.4)
2022
irls
Squares : (Version )
0
irt : Item Response Theory and Computerized Adaptive Testing Functions (Version 0.2.9)
2020
iso8601 : Working with ISO8601 Dates and Times (Version 0.1.2)
2024
isodistrreg : Isotonic Distributional Regression (IDR) (Version 0.1.0)
2021
isotree : Isolation-Based Outlier Detection (Version 0.6.1-4)
2019
itmsa : Information-Theoretic Measures for Spatial Association (Version 0.1.0)
2024
itp : The Interpolate, Truncate, Project (ITP) Root-Finding Algorithm (Version 1.2.2)
2022
ivdoctr : Ensures Mutually Consistent Beliefs When Using IVs (Version 1.0.1)
2020
ivtools : Instrumental Variables (Version 2.3.0)
2018
ivx : Robust Econometric Inference (Version 1.1.1)
2019
jSDM : Joint Species Distribution Models (Version 0.2.7)
2019
jaccard
Coefficients : (Version )
0
jackalope
Simulator : (Version )
0
jacobi : Jacobi Theta Functions and Related Functions (Version 3.1.1)
2022
jfa : Statistical Methods for Auditing (Version 0.7.4)
2020
jmatrix
Format : (Version )
0
jmcm : Joint Mean-Covariance Models using 'Armadillo' and S4 (Version 0.2.5)
2015
jmvconnect : Connect to the 'jamovi' Statistical Spreadsheet (Version 2.5.7)
2018
joinXL : Perform Joins or Minus Queries on 'Excel' Files (Version 1.0.1)
2016
jrSiCKLSNMF : Multimodal Single-Cell Omics Dimensionality Reduction (Version 1.2.3)
2023
jsonify
(JSON) : (Version )
0
jti : Junction Tree Inference (Version 1.0.0)
2020
jumps : Hodrick-Prescott Filter with Jumps (Version 1.0)
2025
junctions : The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages (Version 2.1.3)
2018
kalmanfilter : Kalman Filter (Version 2.2.0)
2022
kamila : Methods for Clustering Mixed-Type Data (Version 0.1.2)
2016
kanjistat
Characters : (Version )
0
kbal : Kernel Balancing (Version 0.1.3)
2024
kcpRS : Kernel Change Point Detection on the Running Statistics (Version 1.1.1)
2019
kde1d : Univariate Kernel Density Estimation (Version 1.1.1)
2018
kdecopula : Kernel Smoothing for Bivariate Copula Densities (Version 0.9.3)
2015
kdevine : Multivariate Kernel Density Estimation with Vine Copulas (Version 0.4.6)
2017
kerSeg : New Kernel-Based Change-Point Detection (Version 1.1)
2022
kergp : Gaussian Process Laboratory (Version 0.5.8)
2015
kernelboot : Smoothed Bootstrap and Random Generation from Kernel Densities (Version 0.1.10)
2017
keyATM : Keyword Assisted Topic Models (Version 0.5.5)
2020
kgrams : Classical k-gram Language Models (Version 0.2.1)
2021
kimfilter : Kim Filter (Version 1.1.0)
2022
kissmig : a Keep It Simple Species Migration Model (Version 2.0-1)
2015
kkmeans : Fast Implementations of Kernel K-Means (Version 0.1.3)
2026
klsh : Blocking for Record Linkage (Version 0.1.0)
2020
kmBlock : k-Means Like Blockmodeling of One-Mode and Linked Networks (Version 0.1.4)
2023
kmeRtone : Multi-Purpose and Flexible k-Meric Enrichment Analysis Software (Version 1.0)
2024
kmer
Analysis : (Version )
0
knn.covertree : An Accurate kNN Implementation with Multiple Distance Measures (Version 1.1)
2019
kohonen : Supervised and Unsupervised Self-Organising Maps (Version 3.0.13)
2006
krige : Geospatial Kriging with Metropolis Sampling (Version 0.6.2)
2018
ksNN : K* Nearest Neighbors Algorithm (Version 0.1.2)
2019
ksm
Matrices : (Version )
0
ktaucenters : Robust Clustering Procedures (Version 1.0.0)
2019
kvh : Read/Write Files in Key-Value-Hierarchy Format (Version 1.4.2)
2017
l1spectral : An L1-Version of the Spectral Clustering (Version 0.99.6)
2021
lacunr : Fast 3D Lacunarity for Voxel Data (Version 1.0.2)
2024
lamW : Lambert-W Function (Version 2.2.6)
2015
lamle : Maximum Likelihood Estimation of Latent Variable Models (Version 0.3.1)
2023
landscapeR : Categorical Landscape Simulation Facility (Version 1.3.1)
2016
landscapemetrics : Landscape Metrics for Categorical Map Patterns (Version 2.2.1)
2018
landsepi : Landscape Epidemiology and Evolution (Version 1.5.3)
2018
later
Loops : (Version )
0
lavaSearch2 : Tools for Model Specification in the Latent Variable Framework (Version 2.0.3)
2018
lavacreg : Latent Variable Count Regression Models (Version 0.2-2)
2021
lbaModel : The Linear Ballistic Accumulation Model (Version 0.2.9.2)
2025
lbfgs : Limited-memory BFGS Optimization (Version 1.2.1.2)
2014
lconnect : Simple Tools to Compute Landscape Connectivity Metrics (Version 0.1.2)
2019
lcopula : Liouville Copulas (Version 1.0.7)
2015
lddmm : Longitudinal Drift-Diffusion Mixed Models (LDDMM) (Version 0.4.2)
2021
ldmppr
Processes : (Version )
0
ldsep : Linkage Disequilibrium Shrinkage Estimation for Polyploids (Version 2.1.6)
2020
ldt : Automated Uncertainty Analysis (Version 0.5.3)
2023
leafletZH : Chinese Leaflet Map Relate Operation (Version 0.1.1)
2024
learner : Latent Space-Based Transfer Learning (Version 1.0.0)
2025
lefko3 : Historical and Ahistorical Population Projection Matrix Analysis (Version 6.6.0)
2020
legion : Forecasting Using Multivariate Models (Version 0.2.1)
2021
leidenAlg : Implements the Leiden Algorithm via an R Interface (Version 1.1.5)
2020
lessSEM : Non-Smooth Regularization for Structural Equation Models (Version 1.5.7)
2023
lexRankr : Extractive Summarization of Text with the LexRank Algorithm (Version 0.5.2)
2016
lfl : Linguistic Fuzzy Logic (Version 2.3.1)
2015
lfmm : Latent Factor Mixed Models (Version 1.1)
2020
lgpr : Longitudinal Gaussian Process Regression (Version 1.2.5)
2021
lgspline
Estimation : (Version )
0
lhs : Latin Hypercube Samples (Version 1.2.0)
2006
libr : Libraries, Data Dictionaries, and a Data Step for R (Version 1.3.9)
2020
libstable4u : Stable Distribution Functions...For You (Version 1.0.5)
2023
lidR
Applications : (Version )
0
lifecontingencies : Financial and Actuarial Mathematics for Life Contingencies (Version 1.4.4)
2011
lifepack : Insurance Reserve Calculations (Version 0.1.0)
2025
lightAUC : Fast AUC Computation (Version 0.1.3)
2025
lime : Local Interpretable Model-Agnostic Explanations (Version 0.5.4)
2017
lineup2 : Lining Up Two Sets of Measurements (Version 0.6)
2020
lingdist : Fast Linguistic Distance and Alignment Computation (Version 1.0)
2023
lingmatch : Linguistic Matching and Accommodation (Version 1.0.7)
2021
lit : Latent Interaction Testing for Genome-Wide Studies (Version 1.0.1)
2023
llbayesireg : The L-Logistic Bayesian Regression (Version 1.0.0)
2019
lm.br : Linear Model with Breakpoint (Version 2.9.8)
2013
locStra : Fast Implementation of (Local) Population Stratification Methods (Version 1.9)
2019
localLLM : Running Local LLMs with 'llama.cpp' Backend (Version 1.1.0)
2025
localScore : Package for Sequence Analysis by Local Score (Version 2.0.3)
2021
localboot : Local Bootstrap Methods for Various Networks (Version 0.9.2)
2023
logKDE
Data : (Version )
0
lolog : Latent Order Logistic Graph Models (Version 1.3.2)
2018
longevity : Statistical Methods for the Analysis of Excess Lifetimes (Version 1.2.2)
2023
lowmemtkmeans : Low Memory Use Trimmed K-Means (Version 0.1.4)
2016
lowpassFilter : Lowpass Filtering (Version 1.0-2)
2020
lpcde : Boundary Adaptive Local Polynomial Conditional Density Estimator (Version 0.1.6)
2022
lpirfs : Local Projections Impulse Response Functions (Version 0.2.5)
2018
lsirm12pl : Latent Space Item Response Model (Version 1.3.9)
2022
lsoda : 'C++' Header Library for Ordinary Differential Equations (Version 1.2)
2025
luajr : 'LuaJIT' Scripting (Version 0.2.0)
2024
ludic : Linkage Using Diagnosis Codes (Version 0.2.1)
2016
lutz : Look Up Time Zones of Point Coordinates (Version 0.3.2)
2018
lwgeom : Bindings to Selected 'liblwgeom' Functions for Simple Features (Version 0.2-15)
2017
m2r : Interface to 'Macaulay2' (Version 1.0.3)
2017
mHMMbayes : Multilevel Hidden Markov Models Using Bayesian Estimation (Version 1.1.1)
2019
magi : MAnifold-Constrained Gaussian Process Inference (Version 1.2.5)
2021
magick : Advanced Graphics and Image-Processing in R (Version 2.9.0)
2016
malan : MAle Lineage ANalysis (Version 1.0.4)
2020
manifold : Operations for Riemannian Manifolds (Version 0.1.2)
2022
maotai : Tools for Matrix Algebra, Optimization and Inference (Version 0.3.0)
2019
mapdeck : Interactive Maps Using 'Mapbox GL JS' and 'Deck.gl' (Version 0.3.6)
2018
mapfit : PH/MAP Parameter Estimation (Version 1.0.0)
2015
mapi : Mapping Averaged Pairwise Information (Version 1.1.4)
2018
mappoly : Genetic Linkage Maps in Autopolyploids (Version 0.4.2)
2020
mapscanner : Print Maps, Draw on Them, Scan Them Back in (Version 0.1.1)
2021
maq : Multi-Armed Qini (Version 0.6.0)
2023
marble
Interactions : (Version )
0
marcox : Marginal Hazard Ratio Estimation in Clustered Failure Time Data (Version 1.0.0)
2025
marked : Mark-Recapture Analysis for Survival and Abundance Estimation (Version 1.2.8)
2013
markerpen : Marker Gene Detection via Penalized Principal Component Analysis (Version 0.1.2)
2021
markets : Estimation Methods for Markets in Equilibrium and Disequilibrium (Version 1.1.6)
2022
markophylo : Markov Chain Models for Phylogenetic Trees (Version 1.0.9)
2015
markovchain : Easy Handling Discrete Time Markov Chains (Version 0.10.0)
2013
mas : Multi-Population Association Studies (Version 0.4)
2022
mase : Model-Assisted Survey Estimators (Version 0.1.5.2)
2018
mashr : Multivariate Adaptive Shrinkage (Version 0.2.79)
2020
mastif : Mast Inference and Forecasting (Version 2.3)
2019
matchingMarkets : Analysis of Stable Matchings (Version 1.0-5)
2014
matchingR : Matching Algorithms in R and C++ (Version 2.0.0)
2015
mateable : Assess Mating Potential in Space and Time (Version 0.3.3)
2016
matricks : Useful Tricks for Matrix Manipulation (Version 0.8.2)
2020
matrixCorr : Collection of Correlation and Association Estimators (Version 0.8.3)
2025
matrixdist : Statistics for Matrix Distributions (Version 1.1.9)
2021
matrixprofiler : Matrix Profile for R (Version 0.1.10)
2021
matrixset : Creating, Manipulating and Annotating Matrix Ensemble (Version 0.4.1)
2023
maxbootR : Efficient Bootstrap Methods for Block Maxima (Version 1.0.0)
2025
mcemGLM
Models : (Version )
0
mcga
Problems : (Version )
0
mcglm : Multivariate Covariance Generalized Linear Models (Version 0.9.0)
2016
mclm : Mastering Corpus Linguistics Methods (Version 0.2.7)
2022
mclustAddons : Addons for the 'mclust' Package (Version 0.10)
2021
mclustcomp : Measures for Comparing Clusters (Version 0.3.5)
2017
mcmcsae : Markov Chain Monte Carlo Small Area Estimation (Version 0.8.0)
2020
mcmcse : Monte Carlo Standard Errors for MCMC (Version 1.5-1)
2012
md4r : Markdown Parser Implemented using the 'MD4C' Library (Version 0.5.2.0)
2024
mdendro : Extended Agglomerative Hierarchical Clustering (Version 2.2.3)
2018
mdgc : Missing Data Imputation Using Gaussian Copulas (Version 0.1.7)
2021
mdmb : Model Based Treatment of Missing Data (Version 1.9-22)
2017
measr : Bayesian Psychometric Measurement Using 'Stan' (Version 2.0.0)
2023
medfate : Mediterranean Forest Simulation (Version 4.8.4)
2016
medfateland : Mediterranean Landscape Simulation (Version 2.8.1)
2024
melt : Multiple Empirical Likelihood Tests (Version 1.11.4)
2021
meltt : Matching Event Data by Location, Time and Type (Version 0.4.3)
2017
memshare : Shared Memory Multithreading (Version 1.1.0)
2025
mergeTrees : Aggregating Trees (Version 0.1.3)
2019
metaBMA
Meta-Analysis : (Version )
0
metacart
Meta-Analysis : (Version )
0
metapack : Bayesian Meta-Analysis and Network Meta-Analysis (Version 0.3)
2021
meteoland : Landscape Meteorology Tools (Version 2.2.5)
2016
meteor : Meteorological Data Manipulation (Version 0.4-5)
2019
mets : Analysis of Multivariate Event Times (Version 1.3.9)
2012
mev : Modelling of Extreme Values (Version 2.1)
2015
mfGARCH : Mixed-Frequency GARCH Models (Version 0.2.2)
2018
miRNAss : Genome-Wide Discovery of Pre-miRNAs with few Labeled Examples (Version 1.5)
2017
mice : Multivariate Imputation by Chained Equations (Version 3.19.0)
2006
miceFast : Fast Imputations Using 'Rcpp' and 'Armadillo' (Version 0.8.5)
2018
miceadds
'mice' : (Version )
0
microseq : Basic Biological Sequence Handling (Version 2.1.7)
2016
micsr : Microeconometrics with R (Version 0.1-4)
2024
midr
Decomposition : (Version )
0
mig : Multivariate Inverse Gaussian Distribution (Version 2.0)
2024
miic
Theory : (Version )
0
milorGWAS
(GWAS) : (Version )
0
milr : Multiple-Instance Logistic Regression with LASSO Penalty (Version 0.4.1)
2016
minerva
Analysis : (Version )
0
miniLNM : Miniature Logistic-Normal Multinomial Models (Version 0.1.0)
2024
miniPCH : Survival Distributions with Piece-Wise Constant Hazards (Version 0.4.0)
2023
minic : Minimization Methods for Ill-Conditioned Problems (Version 1.0.3)
2024
minqa
Approximation : (Version )
0
mirt : Multidimensional Item Response Theory (Version 1.45.1)
2011
missSBM : Handling Missing Data in Stochastic Block Models (Version 1.0.5)
2019
missSOM : Self-Organizing Maps with Built-in Missing Data Imputation (Version 1.0.1)
2021
missoNet : Joint Sparse Regression & Network Learning with Missing Data (Version 1.5.1)
2022
mistral : Methods in Structural Reliability (Version 2.2.4)
2013
mixR : Finite Mixture Modeling for Raw and Binned Data (Version 0.2.1)
2017
mixdir : Cluster High Dimensional Categorical Datasets (Version 0.3.0)
2018
mixedBayes : Bayesian Longitudinal Regularized Quantile Mixed Model (Version 0.2.0)
2023
mixedCCA
Data : (Version )
0
mixedMem : Tools for Discrete Multivariate Mixed Membership Models (Version 1.1.2)
2015
mixgb : Multiple Imputation Through 'XGBoost' (Version 2.2.3)
2022
mixture : Mixture Models for Clustering and Classification (Version 2.2.0)
2013
mixvlmc : Variable Length Markov Chains with Covariates (Version 0.2.2)
2023
mizer : Dynamic Multi-Species Size Spectrum Modelling (Version 2.5.4)
2013
mkde : 2D and 3D Movement-Based Kernel Density Estimates (MKDEs) (Version 0.4)
2014
mlmc : Multi-Level Monte Carlo (Version 2.1.1)
2016
mlpack : 'Rcpp' Integration for the 'mlpack' Library (Version 4.6.3)
2020
mlrv : Long-Run Variance Estimation in Time Series Regression (Version 0.1.2)
2023
mlsbm : Efficient Estimation of Bayesian SBMs & MLSBMs (Version 0.99.2)
2021
mlts : Multilevel Latent Time Series Models with 'R' and 'Stan' (Version 2.0.1)
2024
mmand : Mathematical Morphology in Any Number of Dimensions (Version 1.6.3)
2012
mmapcharr : Memory-Map Character Files (Version 0.3.1)
2017
mmconvert : Mouse Map Converter (Version 0.12)
2023
mmpca : Integrative Analysis of Several Related Data Matrices (Version 2.0.4)
2019
mmrm : Mixed Models for Repeated Measures (Version 0.3.17)
2022
mmsample : Multivariate Matched Sampling (Version 0.1)
2018
mniw : The Matrix-Normal Inverse-Wishart Distribution (Version 1.0.2)
2019
mnorm : Multivariate Normal Distribution (Version 1.2.2)
2022
mobsim
Changes : (Version )
0
modeLLtest : Compare Models with Cross-Validated Log-Likelihood (Version 1.0.5)
2019
modelSelection : High-Dimensional Model Selection (Version 1.0.5)
2025
modesto : Modeling and Analysis of Stochastic Systems (Version 0.1.4)
2018
mokken : Conducts Mokken Scale Analysis (Version 3.1.2)
2007
mombf : Model Selection with Bayesian Methods and Information Criteria (Version 3.5.4)
2008
monolix2rx : Converts 'Monolix' Models to 'rxode2' (Version 0.0.6)
2024
mop : Mobility Oriented-Parity Metric (Version 0.1.3)
2023
morseTKTD : Bayesian Inference of TKTD Models (Version 0.1.3)
2025
mosum : Moving Sum Based Procedures for Changes in the Mean (Version 1.2.7)
2018
motif : Local Pattern Analysis (Version 0.6.5)
2021
mousetrap : Process and Analyze Mouse-Tracking Data (Version 3.2.3)
2016
move : Visualizing and Analyzing Animal Track Data (Version 4.2.7)
2012
moveHMM : Animal Movement Modelling using Hidden Markov Models (Version 1.12)
2015
moveWindSpeed : Estimate Wind Speeds from Bird Trajectories (Version 0.2.4)
2016
mp : Multidimensional Projection Techniques (Version 0.4.1)
2014
mpactr : Correction of Preprocessed MS Data (Version 0.3.1)
2024
mr.mashr : Multiple Regression with Multivariate Adaptive Shrinkage (Version 0.3.44)
2026
mrMLM : Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for GWAS (Version 5.0.1)
2016
mrbayes : Bayesian Summary Data Models for Mendelian Randomization Studies (Version 0.5.2)
2019
mrbsizeR : Scale Space Multiresolution Analysis of Random Signals (Version 1.3)
2017
mrf2d : Markov Random Field Models for Image Analysis (Version 1.0)
2019
mrfDepth
Settings : (Version )
0
mrfse : Markov Random Field Structure Estimator (Version 0.4.2)
2019
mrgsolve : Simulate from ODE-Based Models (Version 1.7.2)
2017
mrregression
Reduce : (Version )
0
msPCA
Components : (Version )
0
msce : Hazard of Multi-Stage Clonal Expansion Models (Version 1.0.2)
2020
msde
Equations : (Version )
0
msentropy : Spectral Entropy for Mass Spectrometry Data (Version 0.1.4)
2023
mssearchr
Databases : (Version )
0
mtdesign : Mander and Thompson Designs (Version 0.1.4)
2022
multbxxc : Auxiliary Routines for Influx Software (Version 1.0.3)
2019
multgee
Responses : (Version )
0
multiRL : Reinforcement Learning Tools for Multi-Armed Bandit (Version 0.2.3)
2026
multiScaleR : Methods for Optimizing Scales of Effect (Version 0.4.5)
2025
multiblock : Multiblock Data Fusion in Statistics and Machine Learning (Version 0.8.10)
2021
multibridge : Evaluating Multinomial Order Restrictions with Bridge Sampling (Version 1.3.0)
2021
multicool : Permutations of Multisets in Cool-Lex Order (Version 1.0.1)
2011
multilevLCA
Models : (Version )
0
multilink : Multifile Record Linkage and Duplicate Detection (Version 0.1.1)
2023
multinet : Analysis and Mining of Multilayer Social Networks (Version 4.3.2)
2017
multinets : Multilevel Networks Analysis (Version 0.2.2)
2017
multinma : Bayesian Network Meta-Analysis of Individual and Aggregate Data (Version 0.8.1)
2020
multinomialLogitMix
Covariates : (Version )
0
multinomineq
Constraints : (Version )
0
multipleDL
(CPMs) : (Version )
0
multivariance : Measuring Multivariate Dependence Using Distance Multivariance (Version 2.4.1)
2017
multiview : Cooperative Learning for Multi-View Analysis (Version 0.8)
2022
mutualinf : Computation and Decomposition of the Mutual Information Index (Version 2.0.4)
2021
mvMAPIT : Multivariate Genome Wide Marginal Epistasis Test (Version 2.0.3)
2022
mvabund : Statistical Methods for Analysing Multivariate Abundance Data (Version 4.2.8)
2010
mvgam : Multivariate (Dynamic) Generalized Additive Models (Version 1.1.594)
2024
mvnfast : Fast Multivariate Normal and Student's t Methods (Version 0.2.8)
2014
mvnimpute : Simultaneously Impute the Missing and Censored Values (Version 1.0.1)
2022
mvp : Fast Symbolic Multivariate Polynomials (Version 1.0-18)
2018
mvrsquared
Outcomes : (Version )
0
mwcsr
Variants : (Version )
0
mxsem : Specify 'OpenMx' Models with a 'lavaan'-Style Syntax (Version 0.1.0)
2023
myTAI : Evolutionary Transcriptomics (Version 2.3.4)
2014
n1qn1
Optimization : (Version )
0
nabor
Dimensions : (Version )
0
nametagger : Named Entity Recognition in Texts using 'NameTag' (Version 0.1.5)
2020
nandb : Number and Brightness Image Analysis (Version 2.1.1)
2017
narray : Subset- And Name-Aware Array Utility Functions (Version 0.5.2)
2016
natcpp : Fast C++ Primitives for the 'NeuroAnatomy Toolbox' (Version 0.2)
2021
navigation
Performance : (Version )
0
nbody : Gravitational N-Body Simulation (Version 1.41)
2022
ndjson : Wicked-Fast Streaming 'JSON' ('ndjson') Reader (Version 0.9.1)
2016
ndl : Naive Discriminative Learning (Version 0.2.18)
2011
neatRanges : Tidy Up Date/Time Ranges (Version 0.1.4)
2019
netClust : Model-Based Clustering of Network Data (Version 1.0.2)
2020
netUtils : A Collection of Tools for Network Analysis (Version 0.8.3)
2022
netdiffuseR : Analysis of Diffusion and Contagion Processes on Networks (Version 1.24.0)
2016
netgsa : Network-Based Gene Set Analysis (Version 4.0.7)
2014
netrankr : Analyzing Partial Rankings in Networks (Version 1.2.4)
2018
nett : Network Analysis and Community Detection (Version 1.0.0)
2022
networkR : Network Analysis and Visualization (Version 0.1.5)
2018
networkscaleup : Network Scale-Up Models for Aggregated Relational Data (Version 0.2-1)
2022
neuroim : Data Structures and Handling for Neuroimaging Data (Version 0.0.6)
2014
neuroim2 : Data Structures for Brain Imaging Data (Version 0.8.5)
2025
nevada : Network-Valued Data Analysis (Version 0.2.0)
2021
nftbart : Nonparametric Failure Time Bayesian Additive Regression Trees (Version 2.3)
2021
nhppp : Simulating Nonhomogeneous Poisson Point Processes (Version 1.0.2)
2024
niaidMI : Markov Model Multiple Imputation for NIAID OS (Version 1.1.0)
2021
nilsier : Design-Based Estimators for NILS (Version 0.1.1)
2025
nlmeVPC : Visual Model Checking for Nonlinear Mixed Effect Model (Version 2.8)
2021
nlmixr2est
Routines : (Version )
0
nlmm : Generalized Laplace Mixed-Effects Models (Version 1.1.1)
2020
nmixgof : Goodness of Fit Checks for Binomial N-Mixture Models (Version 0.1.1)
2018
nmslibR : Non Metric Space (Approximate) Library (Version 1.0.7)
2018
nn2poly
Coefficients : (Version )
0
nodeSub : Simulate DNA Alignments Using Node Substitutions (Version 1.2.9)
2021
noisysbmGGM : Noisy Stochastic Block Model for GGM Inference (Version 0.1.2.3)
2024
nomclust : Hierarchical Cluster Analysis of Nominal Data (Version 2.8.1)
2015
nonlinearTseries : Nonlinear Time Series Analysis (Version 0.3.1)
2013
nonmem2rx : Converts 'NONMEM' Models to 'rxode2' (Version 0.1.9)
2023
nonneg.cg : Non-Negative Conjugate-Gradient Minimizer (Version 0.1.6-1)
2019
nonprobsvy : Inference Based on Non-Probability Samples (Version 0.2.3)
2024
nuggets : Extensible Framework for Data Pattern Exploration (Version 2.1.0)
2023
nullcat : Null Models for Categorical and Continuous Community Matrices (Version 0.1.0)
2025
numbat : Haplotype-Aware CNV Analysis from scRNA-Seq (Version 1.5.1)
2022
o2geosocial : Reconstruction of Transmission Chains from Surveillance Data (Version 1.1.3)
2020
o2plsda : Multiomics Data Integration (Version 0.0.26)
2021
obliqueRSF : Oblique Random Forests for Right-Censored Time-to-Event Data (Version 0.1.2)
2018
oce : Analysis of Oceanographic Data (Version 1.8-3)
2007
ocf : Ordered Correlation Forest (Version 1.0.3)
2023
odbc : Connect to ODBC Compatible Databases (using the DBI Interface) (Version 1.6.4.1)
2017
oddsapiR : Access Live Sports Odds from the Odds API (Version 0.0.3)
2022
oem : Orthogonalizing EM: Penalized Regression for Big Tall Data (Version 2.0.12)
2012
oeli : Some Utilities for Developing Data Science Software (Version 0.7.5)
2023
offlineChange : Detect Multiple Change Points from Time Series (Version 0.0.4)
2019
ohenery : Modeling of Ordinal Random Variables via Softmax Regression (Version 0.1.4)
2019
olctools : Open Location Code Handling in R (Version 0.3.0)
2015
oncomsm : Bayesian Multi-State Models for Early Oncology (Version 0.1.4)
2022
oneclust : Maximum Homogeneity Clustering for Univariate Data (Version 0.3.0)
2020
onemap : Construction of Genetic Maps in Experimental Crosses (Version 3.2.4)
2008
onlinePCA : Online Principal Component Analysis (Version 1.3.2)
2014
onlineforecast : Forecast Modelling for Online Applications (Version 1.0.2)
2020
ontologySimilarity : Calculating Ontological Similarities (Version 2.7)
2016
opa : An Implementation of Ordinal Pattern Analysis (Version 0.8.3)
2022
openCR : Open Population Capture-Recapture (Version 2.2.7)
2018
openair : Tools for the Analysis of Air Pollution Data (Version 2.19.0)
2010
opencv : Bindings to 'OpenCV' Computer Vision Library (Version 0.5.1)
2019
openxlsx : Read, Write and Edit xlsx Files (Version 4.2.8.1)
2014
openxlsx2 : Read, Write and Edit 'xlsx' Files (Version 1.23.1)
2022
optiSel : Optimum Contribution Selection and Population Genetics (Version 2.0.9)
2016
optiSolve : Linear, Quadratic, and Rational Optimization (Version 1.0)
2017
optmatch : Functions for Optimal Matching (Version 0.10.8)
2005
opusminer : OPUS Miner Algorithm for Filtered Top-k Association Discovery (Version 0.1-1)
2017
orf : Ordered Random Forests (Version 0.1.4)
2019
osmdata
Objects : (Version )
0
osqp : Quadratic Programming Solver using the 'OSQP' Library (Version 0.6.3.3)
2018
outliertree : Explainable Outlier Detection Through Decision Tree Conditioning (Version 1.10.0)
2019
pARI : Permutation-Based All-Resolutions Inference (Version 1.1.3)
2021
pECV : Entrywise Splitting Cross-Validation for Factor Models (Version 1.0.1)
2025
pEPA : Tests of Equal Predictive Accuracy for Panels of Forecasts (Version 1.2)
2024
pGPx : Pseudo-Realizations for Gaussian Process Excursions (Version 0.1.4)
2018
pPCA
Matrices : (Version )
0
pROC : Display and Analyze ROC Curves (Version 1.19.0.1)
2010
packcircles : Circle Packing (Version 0.3.7)
2015
padr : Quickly Get Datetime Data Ready for Analysis (Version 0.6.3)
2017
pagoda2 : Single Cell Analysis and Differential Expression (Version 1.0.13)
2021
palm : Fitting Point Process Models via the Palm Likelihood (Version 1.1.6)
2017
pander : An R 'Pandoc' Writer (Version 0.6.6)
2012
parTimeROC : Parametric Time-Dependent Receiver Operating Characteristic (Version 0.2.0)
2024
parallelDist : Parallel Distance Matrix Computation using Multiple Threads (Version 0.2.7)
2017
parallelpam : Parallel Partitioning-Around-Medoids (PAM) for Big Sets of Data (Version 1.4.3)
2022
parglm : Parallel GLM (Version 0.1.7)
2018
parsermd : Formal Parser and Related Tools for R Markdown Documents (Version 0.2.0)
2021
partition : Agglomerative Partitioning Framework for Dimension Reduction (Version 0.2.2)
2019
parzer : Parse Messy Geographic Coordinates (Version 0.4.4)
2020
patentr : Access USPTO Bulk Data in Tidy Rectangular Format (Version 0.1.4)
2021
paws.common : Paws Low-Level Amazon Web Services API (Version 0.8.8)
2019
pbv : Probabilities for Bivariate Normal Distribution (Version 0.5-47)
2018
pcFactorStan : Stan Models for the Paired Comparison Factor Model (Version 1.5.4)
2019
pcadapt : Fast Principal Component Analysis for Outlier Detection (Version 4.4.1)
2015
pcalg : Methods for Graphical Models and Causal Inference (Version 2.7-12)
2006
pccc : Pediatric Complex Chronic Conditions (Version 1.0.6)
2017
pdSpecEst : An Analysis Toolbox for Hermitian Positive Definite Matrices (Version 1.2.6)
2017
pda : Privacy-Preserving Distributed Algorithms (Version 1.3.0)
2020
pdftools : Text Extraction, Rendering and Converting of PDF Documents (Version 3.6.0)
2016
pecora : Permutation Conditional Random Tests (Version 0.1.2)
2021
pedbp : Pediatric Blood Pressure (Version 2.0.3)
2022
pedometrics : Miscellaneous Pedometric Tools (Version 0.12.1)
2014
pema : Penalized Meta-Analysis (Version 0.1.5)
2021
pemultinom : L1-Penalized Multinomial Regression with Statistical Inference (Version 0.1.1)
2023
penMSM : Estimating Regularized Multi-state Models Using L1 Penalties (Version 0.99)
2014
penppml : Penalized Poisson Pseudo Maximum Likelihood Regression (Version 0.2.4)
2021
pense : Penalized Elastic Net S/MM-Estimator of Regression (Version 2.5.0)
2017
peppm : Piecewise Exponential Distribution with Random Time Grids (Version 0.0.1)
2020
personalized2part : Two-Part Estimation of Treatment Rules for Semi-Continuous Data (Version 0.0.2)
2020
pfr : Interface to the 'C++' Library 'Pf' (Version 1.0.1)
2023
pg : Polya Gamma Distribution Sampler (Version 0.2.4)
2023
pgKDEsphere
Data : (Version )
0
pgdraw : Generate Random Samples from the Polya-Gamma Distribution (Version 1.1)
2018
pgee.mixed
Outcomes : (Version )
0
pgenlibr : PLINK 2 Binary (.pgen) Reader (Version 0.5.4)
2023
ph2bayes : Bayesian Single-Arm Phase II Designs (Version 0.0.2)
2016
ph2bye : Phase II Clinical Trial Design Using Bayesian Methods (Version 0.1.4)
2016
phacking : Sensitivity Analysis for p-Hacking in Meta-Analyses (Version 0.2.1)
2022
phangorn : Phylogenetic Reconstruction and Analysis (Version 2.12.1)
2008
phenofit : Extract Remote Sensing Vegetation Phenology (Version 0.3.11)
2019
philentropy
Functions : (Version )
0
phinterval : Set Operations on Time Intervals (Version 1.0.0)
2026
phm : Phrase Mining (Version 2.1.2)
2020
phonics : Phonetic Spelling Algorithms (Version 1.3.10)
2015
phylobase : Base Package for Phylogenetic Structures and Comparative Data (Version 0.8.12)
2009
phylopairs : Comparative Analyses of Lineage-Pair Traits (Version 0.1.1)
2024
phylosignal : Exploring the Phylogenetic Signal in Continuous Traits (Version 1.3.1)
2015
phylotypr : Classifying DNA Sequences to Taxonomic Groupings (Version 0.1.1)
2024
phyr : Model Based Phylogenetic Analysis (Version 1.1.3)
2019
pimeta : Prediction Intervals for Random-Effects Meta-Analysis (Version 1.1.3)
2018
pintervals : Model Agnostic Prediction Intervals (Version 1.0.1)
2025
piqp
Solver : (Version )
0
piton : Parsing Expression Grammars in Rcpp (Version 1.0.1)
2017
pkgbuild : Find Tools Needed to Build R Packages (Version 1.4.8)
2018
pkgload : Simulate Package Installation and Attach (Version 1.4.1)
2018
pkgstats : Metrics of R Packages (Version 0.2.1)
2022
plac
Data : (Version )
0
pliman : Tools for Plant Image Analysis (Version 3.1.1)
2021
plogr : The 'plog' C++ Logging Library (Version 0.2.0)
2016
plotHMM : Plot Hidden Markov Models (Version 2023.8.28)
2022
plyr : Tools for Splitting, Applying and Combining Data (Version 1.8.9)
2008
poisDoubleSamp : Confidence Intervals with Poisson Double Sampling (Version 1.1.1)
2015
poisbinom : A Faster Implementation of the Poisson-Binomial Distribution (Version 1.0.2)
2017
polylabelr : Find the Pole of Inaccessibility (Visual Center) of a Polygon (Version 1.0.0)
2018
polykde : Polyspherical Kernel Density Estimation (Version 1.1.7)
2025
polyqtlR : QTL Analysis in Autopolyploid Bi-Parental F1 Populations (Version 0.1.1)
2020
polysat : Tools for Polyploid Microsatellite Analysis (Version 1.7-7)
2010
polywog : Bootstrapped Basis Regression with Oracle Model Selection (Version 0.4-2)
2012
pompp : Presence-Only for Marked Point Process (Version 0.1.3)
2022
porridge : Ridge-Type Penalized Estimation of a Potpourri of Models (Version 0.3.3)
2019
portvine : Vine Based (Un)Conditional Portfolio Risk Measure Estimation (Version 1.0.3)
2022
ppgmmga
Algorithms : (Version )
0
pprof : Modeling, Standardization and Testing for Provider Profiling (Version 1.0.2)
2024
pqrBayes : Bayesian Penalized Quantile Regression (Version 1.2.0)
2023
pqrfe : Penalized Quantile Regression with Fixed Effects (Version 1.3)
2022
prcbench : Testing Workbench for Precision-Recall Curves (Version 1.1.10)
2016
prclust : Penalized Regression-Based Clustering Method (Version 1.3)
2015
predtools : Prediction Model Tools (Version 0.0.3)
2021
primes : Fast Functions for Prime Numbers (Version 1.6.1)
2015
princurve : Fit a Principal Curve in Arbitrary Dimension (Version 2.1.6)
1999
prioriactions : Multi-Action Conservation Planning (Version 0.5.0)
2021
probe : Sparse High-Dimensional Linear Regression with PROBE (Version 1.1)
2023
processmapR : Construct Process Maps Using Event Data (Version 0.5.7)
2017
proclhmm : Latent Hidden Markov Models for Response Process Data (Version 1.0.1)
2024
prodlim : Product-Limit Estimation for Censored Event History Analysis (Version 2025.04.28)
2008
profoc : Probabilistic Forecast Combination Using CRPS Learning (Version 1.3.3)
2021
progress : Terminal Progress Bars (Version 1.2.3)
2015
projpred : Projection Predictive Feature Selection (Version 2.10.0)
2018
prome : Patient-Reported Outcome Data Analysis with Stan (Version 3.0.1.5)
2022
promises : Abstractions for Promise-Based Asynchronous Programming (Version 1.5.0)
2018
promotionImpact : Analysis & Measurement of Promotion Effectiveness (Version 0.1.5)
2019
propagate : Propagation of Uncertainty (Version 1.0-7)
2013
prophet : Automatic Forecasting Procedure (Version 1.1.7)
2017
protViz
Proteomics : (Version )
0
protolite : Highly Optimized Protocol Buffer Serializers (Version 2.3.1)
2016
prototest : Inference on Prototypes from Clusters of Features (Version 1.2)
2016
proxyC : Computes Proximity in Large Sparse Matrices (Version 0.5.2)
2018
pryr : Tools for Computing on the Language (Version 0.1.6)
2014
psBayesborrow : Bayesian Information Borrowing with Propensity Score Matching (Version 1.1.0)
2024
psbcSpeedUp : Penalized Semiparametric Bayesian Cox Models (Version 2.1.0)
2023
pseudorank : Pseudo-Ranks (Version 1.0.4)
2018
psgp : Projected Spatial Gaussian Process Methods (Version 0.3-25)
2009
psp : Parameter Space Partitioning MCMC for Global Model Evaluation (Version 1.0.5)
2021
psqn : Partially Separable Quasi-Newton (Version 0.3.2)
2020
psychrolib : Psychrometric Properties of Moist and Dry Air (Version 2.5.2)
2020
publipha : Bayesian Meta-Analysis with Publications Bias and P-Hacking (Version 0.1.2)
2020
puniform : Meta-Analysis Methods Correcting for Publication Bias (Version 0.2.8)
2018
pureseqtmr : Predict Transmembrane Protein Topology (Version 1.4)
2020
purgeR : Inbreeding-Purging Estimation in Pedigreed Populations (Version 1.8.2)
2021
purrrlyr : Tools at the Intersection of 'purrr' and 'dplyr' (Version 0.0.10)
2017
pvEBayes : Empirical Bayes Methods for Pharmacovigilance (Version 0.2.1)
2025
pvar : Calculation and Application of p-Variation (Version 2.2.7)
2012
pwlmm : PWIGLS for Two-Level Multivariate and Multilevel Linear Models (Version 1.1.2)
2022
qGaussian : The q-Gaussian Distribution (Version 0.1.8)
2017
qVarSel : Select Variables for Optimal Clustering (Version 1.2)
2014
qad : Quantification of Asymmetric Dependence (Version 1.0.6)
2018
qbld : Quantile Regression for Binary Longitudinal Data (Version 1.0.3)
2020
qch : Query Composite Hypotheses (Version 2.1.0)
2021
qfratio
Recursion : (Version )
0
qgg : Statistical Tools for Quantitative Genetic Analyses (Version 1.1.6)
2019
qlcal : R Bindings to the Calendaring Functionality of 'QuantLib' (Version 0.0.17)
2021
qmd : Quantification of Multivariate Dependence (Version 1.1.3)
2021
qpdf : Split, Combine and Compress PDF Files (Version 1.4.1)
2019
qqconf : Creates Simultaneous Testing Bands for QQ-Plots (Version 1.3.2)
2021
qrencoder : Quick Response Code (QR Code) / Matrix Barcode Creator (Version 0.1.0)
2016
qs2 : Efficient Serialization of R Objects (Version 0.1.7)
2024
qsplines : Quaternions Splines (Version 1.0.1)
2022
qtl2 : Quantitative Trait Locus Mapping in Experimental Crosses (Version 0.38)
2020
qtl2convert : Convert Data among QTL Mapping Packages (Version 0.30)
2020
qtl2ggplot : Data Visualization for QTL Experiments (Version 1.2.6)
2021
qtl2pleio : Testing Pleiotropy in Multiparental Populations (Version 1.4.3)
2019
quadrupen : Sparsity by Worst-Case Quadratic Penalties (Version 0.2-13)
2012
quadtree : Region Quadtrees for Spatial Data (Version 0.1.14)
2021
qualpalr : Automatic Generation of Qualitative Color Palettes (Version 1.0.1)
2016
quanteda.textmodels : Scaling Models and Classifiers for Textual Data (Version 0.9.10)
2020
quanteda.textplots : Plots for the Quantitative Analysis of Textual Data (Version 0.96.1)
2020
quanteda.textstats : Textual Statistics for the Quantitative Analysis of Textual Data (Version 0.97.2)
2020
quanteda : Quantitative Analysis of Textual Data (Version 4.3.1)
2015
quantities : Quantity Calculus for R Vectors (Version 0.2.3)
2018
quantregRanger : Quantile Regression Forests for 'ranger' (Version 1.0)
2017
quantspec : Quantile-Based Spectral Analysis of Time Series (Version 1.2-4)
2011
queuecomputer : Computationally Efficient Queue Simulation (Version 1.2.0)
2016
quickPWCR : Quickly Construct and Rate Large Binary Pairwised Comparisons (Version 1.2)
2024
quitefastmst : Euclidean and Mutual Reachability Minimum Spanning Trees (Version 0.9.0)
2025
quollr : Visualising How Nonlinear Dimension Reduction Warps Your Data (Version 1.0.6)
2024
qwraps2 : Quick Wraps 2 (Version 0.6.1)
2015
r2sundials : Wrapper for 'SUNDIALS' Solving ODE and Sensitivity Problem (Version 7.2.1-4)
2020
rBMF : Boolean Matrix Factorization (Version 1.1)
2020
rEDM : Empirical Dynamic Modeling ('EDM') (Version 1.15.4)
2016
rENA : Epistemic Network Analysis (Version 0.3.0)
2017
rIACI : Iberian Actuarial Climate Index Calculations (Version 1.0.0)
2025
rIsing : High-Dimensional Ising Model Selection (Version 0.1.0)
2016
rLFT : Processing Linear Features (Version 1.0.1)
2020
rPref : Database Preferences and Skyline Computation (Version 1.5.0)
2014
rSDR : Robust Sufficient Dimension Reduction (Version 1.0.3.0)
2025
rSRD : Sum of Ranking Differences Statistical Test (Version 0.1.8)
2022
rSpectral : Spectral Modularity Clustering (Version 1.0.0.14)
2022
rTRNG : Advanced and Parallel Random Number Generation via 'TRNG' (Version 4.23.1-4)
2019
rTwig : Realistic Quantitative Structure Models (Version 1.4.0)
2024
rags2ridges
Data : (Version )
0
rainette : The Reinert Method for Textual Data Clustering (Version 0.3.2)
2020
ramcmc : Robust Adaptive Metropolis Algorithm (Version 0.1.2)
2016
randnet : Random Network Model Estimation, Selection and Parameter Tuning (Version 1.0)
2017
ranger : A Fast Implementation of Random Forests (Version 0.18.0)
2015
rankdist : Distance Based Ranking Models (Version 1.1.4)
2015
ranktreeEnsemble
Rules : (Version )
0
rapidsplithalf : A Fast Permutation-Based Split-Half Reliability Algorithm (Version 0.6)
2024
rare
Features : (Version )
0
raster : Geographic Data Analysis and Modeling (Version 3.6-32)
2010
ratematrix : Bayesian Estimation of the Evolutionary Rate Matrix (Version 1.2.5)
2018
rater : Statistical Models of Repeated Categorical Rating Data (Version 1.3.2)
2020
rayimage : Image Processing for Simulated Cameras (Version 0.15.1)
2020
rayrender : Build and Raytrace 3D Scenes (Version 0.38.10)
2019
rayshader : Create Maps and Visualize Data in 2D and 3D (Version 0.37.3)
2018
rayvertex : 3D Software Rasterizer (Version 0.12.0)
2021
rbacon : Age-Depth Modelling using Bayesian Statistics (Version 3.5.2)
2017
rbioacc : Inference and Prediction of Toxicokinetic Models (Version 1.3.1)
2021
rbscCI : Blyth-Still-Casella Confidence Interval (Version 0.1.1)
2020
rcbayes
Models : (Version )
0
rcccd : Class Cover Catch Digraph Classification (Version 0.3.2)
2023
rcontroll : Individual-Based Forest Growth Simulator 'TROLL' (Version 0.1.2)
2023
rcppmlpackexamples : Example Use of 'mlpack' from C++ via R (Version 0.0.1)
2025
rcpptimer : 'Rcpp' Tic-Toc Timer with 'OpenMP' Support (Version 1.2.1)
2024
rdist : Calculate Pairwise Distances (Version 0.0.5)
2017
re2 : R Interface to Google RE2 (C++) Regular Expression Library (Version 0.1.4)
2021
reReg : Recurrent Event Regression (Version 1.4.7)
2015
read.gt3x : Parse 'ActiGraph' 'GT3X'/'GT3X+' 'Accelerometer' Data (Version 1.2.0)
2021
readobj : Fast Reader for 'Wavefront' OBJ 3D Scene Files (Version 0.4.1)
2017
readsdmx : Read SDMX-XML Data (Version 0.3.1)
2019
readsparse
Formats : (Version )
0
readstata13 : Import 'Stata' Data Files (Version 0.11.0)
2015
recexcavAAR : 3D Reconstruction of Archaeological Excavations (Version 0.3.0)
2016
reclin2 : Record Linkage Toolkit (Version 0.6.0)
2022
recmap : Compute the Rectangular Statistical Cartogram (Version 1.0.20)
2016
recometrics : Evaluation Metrics for Implicit-Feedback Recommender Systems (Version 0.1.6-3)
2021
reconstructr : Session Reconstruction and Analysis (Version 2.0.4)
2014
recor : Rearrangement Correlation Coefficient (Version 1.0.3)
2025
recosystem : Recommender System using Matrix Factorization (Version 0.5.1)
2014
recurse : Computes Revisitation Metrics for Trajectory Data (Version 1.4.0)
2017
reda : Recurrent Event Data Analysis (Version 0.5.6)
2015
redist : Simulation Methods for Legislative Redistricting (Version 4.3.1)
2015
redistmetrics : Redistricting Metrics (Version 1.0.11)
2021
refinr : Cluster and Merge Similar Values Within a Character Vector (Version 0.3.3)
2018
regmed : Regularized Mediation Analysis (Version 2.1.5)
2020
regmhmm : 'regmhmm' Fits Hidden Markov Models with Regularization (Version 1.0.0)
2023
regnet : Network-Based Regularization for Generalized Linear Models (Version 1.0.2)
2017
regsem : Regularized Structural Equation Modeling (Version 1.9.5)
2016
rem : Relational Event Models (REM) (Version 1.3.1)
2016
relsurv : Relative Survival (Version 2.3-3)
2005
rema : Rare Event Meta Analysis (Version 0.0.1)
2021
remaCor : Random Effects Meta-Analysis for Correlated Test Statistics (Version 0.0.20)
2022
remify : Processing and Transforming Relational Event History Data (Version 3.2.9)
2023
remote : Empirical Orthogonal Teleconnections in R (Version 1.2.3)
2014
remotePARTS : Spatiotemporal Autoregression Analyses for Large Data Sets (Version 1.0.4)
2023
remstats : Computes Statistics for Relational Event History Data (Version 3.2.4)
2023
remulate : Simulate Dynamic Networks from Relational Event Models (Version 2.1.0)
2025
repfdr : Replicability Analysis for Multiple Studies of High Dimension (Version 1.2.3)
2014
repolr : Repeated Measures Proportional Odds Logistic Regression (Version 3.4)
2012
representr : Create Representative Records After Entity Resolution (Version 0.1.5)
2020
repsim : Measures of Representational Similarity Across Models (Version 0.1.0)
2025
resemble : Memory-Based Learning in Spectral Chemometrics (Version 2.2.5)
2014
reservr
Data : (Version )
0
reshape2 : Flexibly Reshape Data: A Reboot of the Reshape Package (Version 1.4.5)
2010
resourcecode : Access to the 'RESOURCECODE' Hindcast Database (Version 0.5.2)
2024
rethnicity : Predicting Ethnic Group from Names (Version 0.2.7)
2021
reticulate : Interface to 'Python' (Version 1.44.1)
2017
revdbayes : Ratio-of-Uniforms Sampling for Bayesian Extreme Value Analysis (Version 1.5.6)
2016
revealedPrefs : Revealed Preferences and Microeconomic Rationality (Version 0.4.1)
2014
rexpokit : R Wrappers for EXPOKIT; Other Matrix Functions (Version 0.26.6.14)
2013
rflexscan : The Flexible Spatial Scan Statistic (Version 1.2.0)
2019
rgeoda : R Library for Spatial Data Analysis (Version 0.1.0)
2021
rgeomorphon : A Lightweight Implementation of the 'Geomorphon' Algorithm (Version 0.3.0)
2025
rgraph6 : Representing Graphs as 'graph6', 'digraph6' or 'sparse6' Strings (Version 2.0-5)
2022
rhoR : Rho for Inter Rater Reliability (Version 1.3.1)
2016
richCluster : Fast, Robust Clustering Algorithms for Gene Enrichment Data (Version 1.0.2)
2025
ridgetorus : PCA on the Torus via Density Ridges (Version 1.0.3)
2022
riemtan : Riemannian Metrics for Symmetric Positive Definite Matrices (Version 0.2.5)
2025
rim : Interface to 'Maxima', Enabling Symbolic Computation (Version 0.8.1)
2021
ripserr : Calculate Persistent Homology with Ripser-Based Engines (Version 1.0.0)
2020
riskParityPortfolio : Design of Risk Parity Portfolios (Version 0.2.2)
2018
rivr : Steady and Unsteady Open-Channel Flow Computation (Version 1.2-3)
2015
rivnet : Extract and Analyze Rivers from Elevation Data (Version 0.6.0)
2023
rjaf
Clustering : (Version )
0
rkriging : Kriging Modeling (Version 1.0.2)
2024
rkvo : Read Key/Value Pair Observations (Version 0.1)
2014
rlemon : R Access to LEMON Graph Algorithms (Version 0.2.1)
2022
rlibkriging : Kriging Models using the 'libKriging' Library (Version 0.9-3)
2022
rliger : Linked Inference of Genomic Experimental Relationships (Version 2.2.1)
2021
rlme
Models : (Version )
0
rmBayes : Performing Bayesian Inference for Repeated-Measures Designs (Version 0.1.16)
2021
rmarchingcubes : Calculate 3D Contour Meshes Using the Marching Cubes Algorithm (Version 0.1.4)
2021
rmgarch : Multivariate GARCH Models (Version 1.4-2)
2013
rminqa : Derivative-Free Optimization in R using C++ (Version 0.3.1)
2022
rmsb : Bayesian Regression Modeling Strategies (Version 1.1-2)
2020
rmumps : Wrapper for MUMPS Library (Version 5.2.1-36)
2015
rncl : An Interface to the Nexus Class Library (Version 0.8.9)
2014
rnndescent
Neighbors : (Version )
0
robCompositions : Compositional Data Analysis (Version 2.4.2)
2009
robcat : Robust Categorical Data Analysis (Version 0.1.0)
2025
robcp : Robust Change-Point Tests (Version 0.3.10)
2019
roben
Interactions : (Version )
0
robmixglm : Robust Generalized Linear Models (GLM) using Mixtures (Version 1.2-5)
2018
roboBayes : Robust Online Bayesian Monitoring (Version 1.3)
2022
robregcc : Robust Regression with Compositional Covariates (Version 1.1)
2019
robsel : Robust Selection Algorithm (Version 0.1.0)
2021
robslopes : Fast Algorithms for Robust Slopes (Version 1.1.4)
2021
robusTest : Calibrated Correlation and Two-Sample Tests (Version 1.1.0)
2022
robustBLME : Robust Bayesian Linear Mixed-Effects Models using ABC (Version 0.1.3)
2017
robustHD : Robust Methods for High-Dimensional Data (Version 0.8.4)
2012
robustSFA : Robust Estimation of Stochastic Frontier Models with MDPDE (Version 0.2.0)
2025
robustlmm : Robust Linear Mixed Effects Models (Version 3.3-3)
2013
robustmatrix : Robust Matrix-Variate Parameter Estimation (Version 0.1.4)
2024
robustreg : Robust Regression Functions (Version 0.1-11)
2012
rococo : Robust Rank Correlation Coefficient and Test (Version 1.1.10)
2011
rofanova : Robust Functional Analysis of Variance (Version 1.0.1)
2022
roll : Rolling and Expanding Statistics (Version 1.2.0)
2016
rolog : Query 'SWI'-'Prolog' from R (Version 0.9.24)
2022
roptim : General Purpose Optimization in R using C++ (Version 0.1.7)
2018
rotasym : Tests for Rotational Symmetry on the Hypersphere (Version 1.2.0)
2019
rotations : Working with Rotation Data (Version 1.6.6)
2013
rpact : Confirmatory Adaptive Clinical Trial Design and Analysis (Version 4.3.0)
2018
rpart.LAD : Least Absolute Deviation Regression Trees (Version 0.1.3)
2019
rpc : Ridge Partial Correlation (Version 2.0.3)
2025
rpf : Response Probability Functions (Version 1.0.15)
2012
rpm : Modeling of Revealed Preferences Matchings (Version 0.7-4)
2023
rpms : Recursive Partitioning for Modeling Survey Data (Version 0.5.1)
2016
rpql : Regularized PQL for Joint Selection in GLMMs (Version 0.8.3)
2016
rqPen : Penalized Quantile Regression (Version 4.1.4)
2014
rrMixture : Reduced-Rank Mixture Models (Version 0.1-2)
2022
rrandvec : Generate Random Vectors Whose Components Sum Up to One (Version 1.0.0)
2023
rrcovHD : Robust Multivariate Methods for High Dimensional Data (Version 0.3-1)
2012
rrecsys : Environment for Evaluating Recommender Systems (Version 0.9.7.3.1)
2016
rres : Realized Relatedness Estimation and Simulation (Version 1.1)
2018
rrpack : Reduced-Rank Regression (Version 0.1-14)
2017
rrr : Reduced-Rank Regression (Version 1.0.0)
2016
rsides : SIDES-Based Subgroup Search Algorithms (Version 0.1)
2024
rsparse : Statistical Learning on Sparse Matrices (Version 0.5.3)
2019
rstan : R Interface to Stan (Version 2.32.7)
2015
rstanarm : Bayesian Applied Regression Modeling via Stan (Version 2.32.2)
2016
rstanbdp : Bayesian Deming Regression for Method Comparison (Version 0.0.3)
2024
rstanemax : Emax Model Analysis with 'Stan' (Version 0.1.9)
2019
rstantools : Tools for Developing R Packages Interfacing with 'Stan' (Version 2.6.0)
2016
rstpm2 : Smooth Survival Models, Including Generalized Survival Models (Version 1.7.1)
2015
rsvddpd
Divergence : (Version )
0
rswipl : Embed 'SWI'-'Prolog' (Version 10.1.1.1)
2022
rsyncrosim : The R Interface to 'SyncroSim' (Version 2.1.9)
2020
rtdists : Response Time Distributions (Version 0.11-5)
2014
rtestim : Estimate the Effective Reproductive Number with Trend Filtering (Version 1.0.1)
2025
rtk : Rarefaction Tool Kit (Version 0.2.7)
2016
rtkore : 'STK++' Core Library Integration to 'R' using 'Rcpp' (Version 1.6.13)
2015
rtrend : Trend Estimating Tools (Version 0.1.5)
2021
rts2 : Real-Time Disease Surveillance (Version 0.10.1)
2022
rucrdtw : R Bindings for the UCR Suite (Version 0.1.6)
2016
rugarch : Univariate GARCH Models (Version 1.5-4)
2011
runner : Running Operations for Vectors (Version 0.4.5)
2018
rupturesRcpp : Object-Oriented Interface for Offline Change-Point Detection (Version 1.0.2)
2025
rust : Ratio-of-Uniforms Simulation with Transformation (Version 1.4.4)
2016
rvMF
Vectors : (Version )
0
rvg : R Graphics Devices for 'Office' Vector Graphics Output (Version 0.4.0)
2016
rvinecopulib : High Performance Algorithms for Vine Copula Modeling (Version 0.7.3.1.0)
2017
rwfec : R Wireless, Forward Error Correction (Version 0.2)
2015
rxode2 : Facilities for Simulating from ODE-Based Models (Version 5.0.1)
2022
rxode2ll : Log-Likelihood Functions for 'rxode2' (Version 2.0.13)
2022
rxylib : Import XY-Data into R (Version 0.2.14)
2017
s2 : Spherical Geometry Operators Using the S2 Geometry Library (Version 1.1.9)
2016
s2net : The Generalized Semi-Supervised Elastic-Net (Version 1.0.7)
2020
sBIC : Computing the Singular BIC for Multiple Models (Version 0.2.0)
2016
sacRebleu : Metrics for Assessing the Quality of Generated Text (Version 0.2.0)
2024
saccadr : Extract Saccades via an Ensemble of Methods Approach (Version 0.1.3)
2022
saeHB.TF.beta : SAE using HB Twofold Subarea Model under Beta Distribution (Version 0.2.0)
2025
saeMSPE : Computing MSPE Estimates in Small Area Estimation (Version 1.4)
2022
saeRobust : Robust Small Area Estimation (Version 0.5.0)
2016
saeczi : Small Area Estimation for Continuous Zero Inflated Data (Version 0.2.0)
2024
samplr : Compare Human Performance to Sampling Algorithms (Version 1.1.0)
2024
sanba : Fitting Shared Atoms Nested Models via MCMC or Variational Bayes (Version 0.0.3)
2025
sanic : Solving Ax = b Nimbly in C++ (Version 0.0.2)
2020
sanketphonetictranslator : Phonetic Transliteration Between Hindi and English (Version 0.1.0)
2024
santoku : A Versatile Cutting Tool (Version 1.1.0)
2020
sarima : Simulation and Prediction with Seasonal ARIMA Models (Version 0.9.5)
2017
satdad
Dependence : (Version )
0
satellite : Handling and Manipulating Remote Sensing Data (Version 1.0.6)
2015
sbfc : Selective Bayesian Forest Classifier (Version 1.0.3)
2016
sbim
Estimator : (Version )
0
sbm : Stochastic Blockmodels (Version 0.4.7)
2020
sbmSDP
Sizes : (Version )
0
sboost : Machine Learning with AdaBoost on Decision Stumps (Version 0.1.2)
2018
sbrl : Scalable Bayesian Rule Lists Model (Version 1.4)
2016
scDHA : Single-Cell Decomposition using Hierarchical Autoencoder (Version 1.2.3)
2021
scINSIGHT : Interpretation of Heterogeneous Single-Cell Gene Expression Data (Version 0.1.5)
2021
scITD : Single-Cell Interpretable Tensor Decomposition (Version 1.0.4)
2021
scModels : Fitting Discrete Distribution Models to Count Data (Version 1.0.4)
2019
scalablebayesm
Marketing : (Version )
0
scanstatistics : Space-Time Anomaly Detection using Scan Statistics (Version 1.1.2)
2016
sccore : Core Utilities for Single-Cell RNA-Seq (Version 1.0.6)
2020
scistreer : Maximum-Likelihood Perfect Phylogeny Inference at Scale (Version 1.2.0)
2022
scoper : Spectral Clustering-Based Method for Identifying B Cell Clones (Version 1.4.0)
2018
scoredec : S-Core Graph Decomposition (Version 0.1.2)
2024
scorematchingad : Score Matching Estimation by Automatic Differentiation (Version 0.1.6)
2024
scorepeak : Peak Functions for Peak Detection in Univariate Time Series (Version 0.1.2)
2019
scoringRules
Forecasts : (Version )
0
scrm : Simulating the Evolution of Biological Sequences (Version 1.7.5)
2014
scrypt : Key Derivation Functions for R Based on Scrypt (Version 0.1.6)
2014
sdcHierarchies : Create and (Interactively) Modify Nested Hierarchies (Version 0.22.0)
2019
sdcTable : Methods for Statistical Disclosure Control in Tabular Data (Version 0.33.0)
2009
sdetorus : Statistical Tools for Toroidal Diffusions (Version 0.1.10)
2020
sdsfun : Spatial Data Science Complementary Features (Version 0.8.1)
2024
secr : Spatially Explicit Capture-Recapture (Version 5.4.1)
2010
secrdesign : Sampling Design for Spatially Explicit Capture-Recapture (Version 2.10.1)
2014
secrfunc : Helper Functions for Package 'secr' (Version 1.0.0)
2025
secsse
Extinction : (Version )
0
segMGarch
Processes : (Version )
0
segclust2d : Bivariate Segmentation/Clustering Methods and Tools (Version 0.3.3)
2018
segmag : Determine Event Boundaries in Event Segmentation Experiments (Version 1.2.4)
2014
segmenTier : Similarity-Based Segmentation of Multidimensional Signals (Version 0.1.2)
2019
segmentr : Segment Data With Maximum Likelihood (Version 0.2.0)
2019
segregation : Entropy-Based Segregation Indices (Version 1.1.0)
2018
segtest : Tests for Segregation Distortion in Polyploids (Version 2.0.0)
2024
seismicRoll : Fast Rolling Functions for Seismology using 'Rcpp' (Version 1.1.5)
2015
selectiveInference : Tools for Post-Selection Inference (Version 1.2.5)
2015
semaphore : Shared Memory Atomic Operations (Version 1.2.0)
2024
semidist : Measure Dependence Between Categorical and Continuous Variables (Version 0.1.0)
2023
semver : 'Semantic Versioning V2.0.0' Parser (Version 0.2.0)
2017
sensitivity
Measures : (Version )
0
sensitivityIxJ
Tables : (Version )
0
sensobol : Computation of Variance-Based Sensitivity Indices (Version 1.1.6)
2019
sentencepiece : Text Tokenization using Byte Pair Encoding and Unigram Modelling (Version 0.2.4)
2020
sentopics : Tools for Joint Sentiment and Topic Analysis of Textual Data (Version 0.7.6)
2022
seqtrie : Radix Tree and Trie-Based String Distances (Version 0.3.5)
2023
serofoi
Data : (Version )
0
serosv : Model Infectious Disease Parameters from Serosurveys (Version 1.1.0)
2024
serrsBayes : Bayesian Modelling of Raman Spectroscopy (Version 0.5-0)
2018
sfcr : Simulate Stock-Flow Consistent Models (Version 0.2.3)
2021
sfcurve : 2x2, 3x3 and Nxn Space-Filling Curves (Version 1.0.0)
2024
sfheaders : Converts Between R Objects and Simple Feature Objects (Version 0.4.5)
2019
sgd : Stochastic Gradient Descent for Scalable Estimation (Version 1.1.3)
2015
sglg : Fitting Semi-Parametric Generalized log-Gamma Regression Models (Version 0.2.6)
2017
sgs : Sparse-Group SLOPE: Adaptive Bi-Level Selection with FDR Control (Version 0.3.9)
2023
shapr : Prediction Explanation with Dependence-Aware Shapley Values (Version 1.0.8)
2020
sharpeRratio : Moment-Free Estimation of Sharpe Ratios (Version 1.4.3)
2016
shortuuid : Generate and Translate Standard UUIDs (Version 0.1.0)
2025
shrinkDSM
Shrinkage : (Version )
0
shrinkTVPVAR
Shrinkage : (Version )
0
sigminer
Variations : (Version )
0
signnet : Methods to Analyse Signed Networks (Version 1.0.6)
2020
simFrame : Simulation Framework (Version 0.5.4)
2009
simPop : Simulation of Complex Synthetic Data Information (Version 2.1.3)
2014
simRestore
Efforts : (Version )
0
simStateSpace : Simulate Data from State Space Models (Version 1.2.14)
2023
simcdm : Simulate Cognitive Diagnostic Model ('CDM') Data (Version 0.1.2)
2019
simcross : Simulate Experimental Crosses (Version 0.6)
2020
simer : Data Simulation for Life Science and Breeding (Version 1.0.0)
2022
simfam : Simulate and Model Family Pedigrees with Structured Founders (Version 1.1.6)
2021
simmer : Discrete-Event Simulation for R (Version 4.4.7)
2015
simmr : A Stable Isotope Mixing Model (Version 0.5.1.217)
2015
simplextree : Provides Tools for Working with General Simplicial Complexes (Version 1.0.1)
2020
simstudy : Simulation of Study Data (Version 0.9.1)
2016
simtrial : Clinical Trial Simulation (Version 1.0.2)
2023
simts : Time Series Analysis Tools (Version 0.2.3)
2019
singR : Simultaneous Non-Gaussian Component Analysis (Version 0.1.3)
2022
sirt : Supplementary Item Response Theory Models (Version 4.2-133)
2013
sitmo
Files : (Version )
0
sits
Cubes : (Version )
0
sketching : Sketching of Data via Random Subspace Embeddings (Version 0.1.2)
2022
skpr
Designs : (Version )
0
skylight : A Simple Sky Illuminance Model (Version 1.4)
2022
slasso : S-LASSO Estimator for the Function-on-Function Linear Regression (Version 1.0.1)
2021
slca : Structural Modeling for Multiple Latent Class Variables (Version 1.4.0)
2024
slcm : Sparse Latent Class Model for Cognitive Diagnosis (Version 0.1.1)
2023
sleev : Semiparametric Likelihood Estimation with Errors in Variables (Version 1.1.6)
2021
slfm
Analysis : (Version )
0
slideimp : Numeric Matrices K-NN and PCA Imputation (Version 0.5.4)
2026
smam : Statistical Modeling of Animal Movements (Version 0.7.2)
2013
smarter
Convenient : (Version )
0
smartsnp : Fast Multivariate Analyses of Big Genomic Data (Version 1.2.0)
2021
smashr : Smoothing by Adaptive Shrinkage (Version 1.3-12)
2025
smer : Sparse Marginal Epistasis Test (Version 0.0.2)
2025
smerc : Statistical Methods for Regional Counts (Version 1.8.4)
2015
smile : Spatial Misalignment: Interpolation, Linkage, and Estimation (Version 1.1.0)
2022
smmR : Simulation, Estimation and Reliability of Semi-Markov Models (Version 1.0.5)
2021
smoof : Single and Multi-Objective Optimization Test Functions (Version 1.6.0.3)
2015
smooth : Forecasting Using State Space Models (Version 4.3.1)
2016
smoothemplik : Smoothed Empirical Likelihood (Version 0.0.17)
2025
smoots : Nonparametric Estimation of the Trend and Its Derivatives in TS (Version 1.1.4)
2019
smurf : Sparse Multi-Type Regularized Feature Modeling (Version 1.1.8)
2018
snowboot : Bootstrap Methods for Network Inference (Version 1.0.2)
2015
snplist : Tools to Create Gene Sets (Version 0.18.3)
2013
snpsettest : A Set-Based Association Test using GWAS Summary Statistics (Version 0.1.2)
2021
socceR : Evaluating Sport Tournament Predictions (Version 0.1.1)
2019
social : Social Autocorrelation (Version 1.0)
2017
sommer : Solving Mixed Model Equations in R (Version 4.4.4)
2016
sorcering
Framework : (Version )
0
sox : Structured Learning in Time-Dependent Cox Models (Version 1.2.2)
2023
spBPS
Learning : (Version )
0
spBayesSurv
Data : (Version )
0
spCP : Spatially Varying Change Points (Version 1.4.0)
2018
spEDM : Spatial Empirical Dynamic Modeling (Version 1.9)
2024
spGARCH : Spatial ARCH and GARCH Models (spGARCH) (Version 0.2.3)
2018
spNetwork : Spatial Analysis on Network (Version 0.4.4.7)
2021
spaMM : Mixed-Effect Models, with or without Spatial Random Effects (Version 4.6.1)
2013
spacefillr : Space-Filling Random and Quasi-Random Sequences (Version 0.4.0)
2021
spam : SPArse Matrix (Version 2.11-3)
2007
sparseDFM : Estimate Dynamic Factor Models with Sparse Loadings (Version 1.0)
2023
sparseLTSEigen : RcppEigen back end for sparse least trimmed squares regression (Version 0.2.0.1)
2012
sparseinv : Computation of the Sparse Inverse Subset (Version 0.1.3)
2018
sparsepp : 'Rcpp' Interface to 'sparsepp' (Version 1.22)
2016
sparsevb
Regression : (Version )
0
sparsio : I/O Operations with Sparse Matrices (Version 1.0.1)
2017
sparta : Sparse Tables (Version 1.0.1)
2020
sparvaride : Variance Identification in Sparse Factor Analysis (Version 1.0.0)
2023
spass : Study Planning and Adaptation of Sample Size (Version 1.3)
2016
spatgraphs : Graph Edge Computations for Spatial Point Patterns (Version 3.4)
2007
spaths : Shortest Paths Between Points in Grids (Version 1.2.0)
2024
spatialising : Ising Model for Spatial Data (Version 0.6.2)
2023
spatialrisk : Calculating Spatial Risk (Version 0.7.3)
2018
spatialwarnings : Spatial Early Warning Signals of Ecosystem Degradation (Version 3.1.1)
2017
spatialwidget : Formats Spatial Data for Use in Htmlwidgets (Version 0.2.6)
2018
spbal : Spatially Balanced Sampling Algorithms (Version 1.0.1)
2024
spduration : Split-Population Duration (Cure) Regression (Version 0.17.3)
2015
specklestar : Reduction of Speckle Data from BTA 6-m Telescope (Version 0.0.1.7)
2018
specs : Single-Equation Penalized Error-Correction Selector (SPECS) (Version 1.0.1)
2020
speedytax : Rapidly Import Classifier Results into 'phyloseq' (Version 1.0.4)
2024
spfa : Semi-Parametric Factor Analysis (Version 1.0)
2023
sphunif : Uniformity Tests on the Circle, Sphere, and Hypersphere (Version 1.4.3)
2021
spiderbar : Parse and Test Robots Exclusion Protocol Files and Rules (Version 0.2.5)
2017
splines2 : Regression Spline Functions and Classes (Version 0.5.4)
2016
splithalf : Calculate Task Split Half Reliability Estimates (Version 0.8.2)
2017
splmm : Simultaneous Penalized Linear Mixed Effects Models (Version 1.2.0)
2020
spnn : Scale Invariant Probabilistic Neural Networks (Version 1.3.0)
2018
sport : Sequential Pairwise Online Rating Techniques (Version 0.2.2)
2018
spotr
Data : (Version )
0
spray : Sparse Arrays and Multivariate Polynomials (Version 1.0-27)
2016
spsurv : Bernstein Polynomial Based Semiparametric Survival Analysis (Version 1.0.0)
2020
squat : Statistics for Quaternion Temporal Data (Version 0.5.0)
2022
srm : Structural Equation Modeling for the Social Relations Model (Version 0.4-26)
2019
ssMRCD : Robust Estimators for Multi-Group and Spatial Data (Version 2.0.1)
2023
ssMousetrack
Stan : (Version )
0
ssdtools : Species Sensitivity Distributions (Version 2.5.0)
2018
staggered : Efficient Estimation Under Staggered Treatment Timing (Version 1.2.2)
2021
starma
Processes : (Version )
0
statespacer : State Space Modelling in 'R' (Version 0.5.0)
2020
statgenGWAS : Genome Wide Association Studies (Version 1.0.12)
2020
statgenIBD : Calculation of IBD Probabilities (Version 1.0.9)
2021
statgenQTLxT : Multi-Trait and Multi-Trial Genome Wide Association Studies (Version 1.0.3)
2023
stcos : Space-Time Change of Support (Version 0.3.1)
2019
stdbscan : Spatio-Temporal DBSCAN Clustering (Version 0.1.0)
2026
stdvectors : C++ Standard Library Vectors in R (Version 0.0.5)
2017
steadyICA
Covariance : (Version )
0
stepR : Multiscale Change-Point Inference (Version 2.1-10)
2015
stepSplitReg : Stepwise Split Regularized Regression (Version 1.0.5)
2022
stfit : Spatio-Temporal Functional Imputation Tool (Version 0.99.9)
2020
stlplus : Enhanced Seasonal Decomposition of Time Series by Loess (Version 0.5.1)
2016
stm : Estimation of the Structural Topic Model (Version 1.3.8)
2014
stochcorr : Stochastic Correlation Modelling via Circular Diffusion (Version 0.0.1)
2025
stochvol
Models : (Version )
0
stockR : Identifying Stocks in Genetic Data (Version 1.0.76)
2018
stocks : Stock Market Analysis (Version 1.1.4)
2015
stosim
Systems : (Version )
0
stplanr : Sustainable Transport Planning (Version 1.2.3)
2015
stpphawkes : Missing Data for Marked Hawkes Process (Version 0.2.2)
2023
strat : An Implementation of the Stratification Index (Version 0.1)
2016
stratEst : Strategy Estimation (Version 1.1.8)
2018
strawr : Fast Implementation of Reading/Dump for .hic Files (Version 0.0.92)
2021
stream : Infrastructure for Data Stream Mining (Version 2.0-3)
2013
stringfish : Alt String Implementation (Version 0.18.0)
2020
stringmagic : Character String Operations and Interpolation, Magic Edition (Version 1.2.0)
2023
striprtf : Extract Text from RTF File (Version 0.6.0)
2016
strucchangeRcpp : Testing, Monitoring, and Dating Structural Changes: C++ Version (Version 1.5-4-1.0.1)
2021
subsampling : Optimal Subsampling Methods for Statistical Models (Version 0.1.1)
2024
sumSome : Permutation True Discovery Guarantee by Sum-Based Tests (Version 1.1.0)
2021
support : Support Points (Version 0.1.7)
2017
sureLDA : A Novel Multi-Disease Automated Phenotyping Method for the EHR (Version 0.1.0-1)
2020
surtvep
Coefficients : (Version )
0
survSNP : Power Calculations for SNP Studies with Censored Outcomes (Version 0.26)
2012
surveil : Time Series Models for Disease Surveillance (Version 0.3.0)
2021
survextrap
Extrapolation : (Version )
0
survey : Analysis of Complex Survey Samples (Version 4.4-8)
2003
surveybootstrap : Bootstrap with Survey Data (Version 0.0.3)
2016
survidm : Inference and Prediction in an Illness-Death Model (Version 1.3.2)
2017
surveyvoi : Survey Value of Information (Version 1.1.1)
2021
survivalmodels : Models for Survival Analysis (Version 0.1.191)
2020
survstan : Fitting Survival Regression Models via 'Stan' (Version 0.0.7.1)
2023
svars : Data-Driven Identification of SVAR Models (Version 1.3.12)
2017
svgViewR : 3D Animated Interactive Visualizations Using SVG and WebGL (Version 1.4.3)
2014
svines : Stationary Vine Copula Models (Version 0.2.7)
2022
svycoxme : Mixed-Effects Cox Models for Complex Samples (Version 1.0.0)
2025
svytest : Survey Weight Diagnostic Tests (Version 1.1.0)
2025
sweater : Speedy Word Embedding Association Test and Extras Using R (Version 0.1.8)
2021
swephR : High Precision Swiss Ephemeris (Version 0.3.2)
2019
switchSelection : Endogenous Switching and Sample Selection Regression Models (Version 2.0.0)
2023
symengine : Interface to the 'SymEngine' Library (Version 0.2.10)
2020
symmetry : Testing for Symmetry of Data and Model Residuals (Version 0.2.3)
2019
symphony : Efficient and Precise Single-Cell Reference Atlas Mapping (Version 0.1.2)
2021
synMicrodata : Synthetic Microdata Generator (Version 2.1.3)
2023
synchronicity : Boost Mutex Functionality in R (Version 1.3.10)
2010
systemicrisk : Systemic Risk and Network Reconstruction (Version 0.4.3)
2015
tEDM : Temporal Empirical Dynamic Modeling (Version 1.2)
2025
tabularMLC : Tabular Maximum Likelihood Classifier (Version 0.0.4)
2021
tagcloud : Tag Clouds (Version 0.7.0)
2013
tagtools : Work with Data from High-Resolution Biologging Tags (Version 0.3.0)
2023
tailplots : Estimators and Plots for Gamma and Pareto Tail Detection (Version 0.1.1)
2025
tame
Clustering : (Version )
0
tall : Text Analysis for All (Version 0.5.1)
2025
targeted : Targeted Inference (Version 0.7.1)
2020
tci : Target Controlled Infusion (TCI) (Version 0.2.1)
2021
tclust : Robust Trimmed Clustering (Version 2.1-2)
2010
tdata : Prepare Your Time-Series Data for Further Analysis (Version 0.3.0)
2023
tensorBSS : Blind Source Separation Methods for Tensor-Valued Observations (Version 0.3.9)
2016
tensorMiss : Handle Missing Tensor Data with C++ Integration (Version 1.1.1)
2024
tergmLite
Models : (Version )
0
terminaldigits : Tests of Uniformity and Independence for Terminal Digits (Version 0.1.0)
2022
terminalgraphics : Graphical Output in Terminals (Version 0.2.1)
2025
terra : Spatial Data Analysis (Version 1.8-93)
2020
tesseract : Open Source OCR Engine (Version 5.2.4)
2016
testforDEP : Dependence Tests for Two Variables (Version 0.2.0)
2017
tetrascatt : Acoustic Scattering for Complex Shapes by Using the DWBA (Version 0.1.1)
2023
texmex : Statistical Modelling of Extreme Values (Version 2.4.9)
2010
text.alignment : Text Alignment with Smith-Waterman (Version 0.1.5)
2020
text2vec : Modern Text Mining Framework for R (Version 0.6.6)
2016
textTinyR : Text Processing for Small or Big Data Files (Version 1.1.8)
2017
textmineR : Functions for Text Mining and Topic Modeling (Version 3.0.6)
2015
textreg : n-Gram Text Regression, aka Concise Comparative Summarization (Version 0.1.5)
2014
textreuse : Detect Text Reuse and Document Similarity (Version 0.1.5)
2015
tfCox : Fits Piecewise Polynomial with Data-Adaptive Knots in Cox Model (Version 0.1.0)
2019
tfarima : Transfer Function and ARIMA Models (Version 0.4.1)
2020
tfevents : Write Events for 'TensorBoard' (Version 0.0.4)
2023
tglkmeans : Efficient Implementation of K-Means++ Algorithm (Version 0.5.8)
2022
thisutils : Collection of Utility Functions for Data Analysis and Computing (Version 0.3.6)
2025
thunder
Parameters : (Version )
0
thurstonianIRT : Thurstonian IRT Models (Version 0.12.5)
2019
tibbletime : Time Aware Tibbles (Version 0.1.9)
2017
tidyCpp : Tidy C++ Header-Only Definitions for Parts of the C API of R (Version 0.0.8)
2020
tidylda : Latent Dirichlet Allocation Using 'tidyverse' Conventions (Version 0.0.7)
2021
tidynorm : Tools for Tidy Vowel Normalization (Version 0.4.0)
2025
tidypopgen : Tidy Population Genetics (Version 0.4.1)
2025
tidysq : Tidy Processing and Analysis of Biological Sequences (Version 1.2.3)
2021
tidyxl : Read Untidy Excel Files (Version 1.0.10)
2017
timeDF : Subset and Flag Data Frames with Times by the Use of Periods (Version 0.9.1)
2024
tinycodet : Functions to Help in your Coding Etiquette (Version 0.5.8)
2023
tipsae
Estimation : (Version )
0
tlars
Selection : (Version )
0
tlrmvnmvt : Low-Rank Methods for MVN and MVT Probabilities (Version 1.1.2.1)
2019
tm : Text Mining Package (Version 0.7-17)
2007
tma : Transmodal Analysis (TMA) (Version 0.3.1)
2025
tmbstan : MCMC Sampling from 'TMB' Model Object using 'Stan' (Version 1.0.91)
2017
tmt : Estimation of the Rasch Model for Multistage Tests (Version 0.3.6-4)
2019
tmvtnsim : Truncated Multivariate Normal and t Distribution Simulation (Version 0.1.4)
2022
tokenizers.bpe : Byte Pair Encoding Text Tokenization (Version 0.1.4)
2019
tokenizers : Fast, Consistent Tokenization of Natural Language Text (Version 0.3.0)
2016
torch : Tensors and Neural Networks with 'GPU' Acceleration (Version 0.16.3)
2020
torchvisionlib : Additional Operators for Image Models (Version 0.6.0)
2022
touch : Tools of Utilization and Cost in Healthcare (Version 0.1-7)
2016
tracerer : Tracer from R (Version 2.2.3)
2018
trackdem : Particle Tracking and Demography (Version 0.7.2)
2017
trajeR : Group Based Modeling Trajectory (Version 0.11.1)
2022
transmdl : Semiparametric Transformation Models (Version 0.1.0)
2021
transport : Computation of Optimal Transport Plans and Wasserstein Distances (Version 0.15-4)
2014
tree.interpreter
Measure : (Version )
0
treeclim : Numerical Calibration of Proxy-Climate Relationships (Version 2.0.7.1)
2014
treespace : Statistical Exploration of Landscapes of Phylogenetic Trees (Version 1.1.4.4)
2017
treestats : Phylogenetic Tree Statistics (Version 1.70.8)
2024
trialr : Clinical Trial Designs in 'rstan' (Version 0.1.6)
2017
triebeard : 'Radix' Trees in 'Rcpp' (Version 0.4.1)
2016
triplediff : Triple-Difference Estimators (Version 0.2.0)
2025
trtswitch : Treatment Switching (Version 0.2.3)
2024
truncnormbayes
'Stan' : (Version )
0
trunmnt : Moments of Truncated Multivariate Normal Distribution (Version 1.0.0)
2025
trustOptim
Hessians : (Version )
0
tsdistributions : Location Scale Standardized Distributions (Version 1.0.3)
2024
tsfknn : Time Series Forecasting Using Nearest Neighbors (Version 0.6.0)
2018
tsfgrnn : Time Series Forecasting Using GRNN (Version 1.0.5)
2019
tsgarch : Univariate GARCH Models (Version 1.0.3)
2024
tsissm : Linear Innovations State Space Unobserved Components Model (Version 1.0.2)
2025
tsmarch : Multivariate ARCH Models (Version 1.0.0)
2024
tsmp : Time Series with Matrix Profile (Version 0.4.16)
2018
ttbary : Barycenter Methods for Spatial Point Patterns (Version 0.3-2)
2019
tvR : Total Variation Regularization (Version 0.3.3)
2017
tvdenoising : Univariate Total Variation Denoising (Version 1.0.0)
2025
twdtw : Time-Weighted Dynamic Time Warping (Version 1.0-1)
2023
twingp : A Fast Global-Local Gaussian Process Approximation (Version 1.0.0)
2024
twinning : Data Twinning (Version 1.1)
2022
ubms : Bayesian Models for Data from Unmarked Animals using 'Stan' (Version 1.2.8)
2021
ugomquantreg : Quantile Regression Modeling for Unit-Gompertz Responses (Version 1.0.0)
2021
ulid
Identifiers : (Version )
0
umap : Uniform Manifold Approximation and Projection (Version 0.2.10.0)
2018
understandBPMN : Calculator of Understandability Metrics for BPMN (Version 1.1.1)
2018
unifiedml : Unified Interface for Machine Learning Models (Version 0.2.0)
2025
unitquantreg : Parametric Quantile Regression Models for Bounded Data (Version 0.0.6)
2022
units : Measurement Units for R Vectors (Version 1.0-0)
2016
unityForest
Forests : (Version )
0
unmarked : Models for Data from Unmarked Animals (Version 1.5.1)
2010
unsystation : Stationarity Test Based on Unsystematic Sub-Sampling (Version 0.2.1)
2016
updog : Flexible Genotyping for Polyploids (Version 2.1.6)
2018
urlparse : Fast Simple URL Parser (Version 0.2.1)
2025
urltools : Vectorised Tools for URL Handling and Parsing (Version 1.7.3.1)
2014
vMF : Sampling from the von Mises-Fisher Distribution (Version 0.0.4)
2022
vapour : Access to the 'Geospatial Data Abstraction Library' ('GDAL') (Version 0.15.0)
2018
varband : Variable Banding of Large Precision Matrices (Version 0.9.0)
2016
varbvs
Methods : (Version )
0
vasicekreg : Regression Modeling Using Vasicek Distribution (Version 1.0.2)
2021
vcfR : Manipulate and Visualize VCF Data (Version 1.15.0)
2016
vcfppR : Rapid Manipulation of the Variant Call Format (VCF) (Version 0.8.2)
2023
vcpen : Penalized Variance Components Analysis (Version 1.9)
2020
vectorwavelet : Vector Wavelet Coherence for Multiple Time Series (Version 0.1.0)
2021
vennplot : Venn Diagrams in 2D and 3D (Version 1.0)
2017
vglmer : Variational Inference for Hierarchical Generalized Linear Models (Version 1.0.6)
2022
viewscape : Viewscape Analysis (Version 2.0.2)
2024
vinereg : D-Vine Quantile Regression (Version 0.12.1)
2018
viscomplexr : Phase Portraits of Functions in the Complex Number Plane (Version 1.1.2)
2020
vita : Variable Importance Testing Approaches (Version 1.0.0)
2015
vntrs : Variable Neighborhood Trust Region Search (Version 0.2.0)
2021
vol2birdR : Vertical Profiles of Biological Signals in Weather Radar Data (Version 1.2.1)
2023
volesti : Volume Approximation and Sampling of Convex Polytopes (Version 1.1.2-9)
2019
vsgoftest : Goodness-of-Fit Tests Based on Kullback-Leibler Divergence (Version 1.0-1)
2018
vws : Vertical Weighted Strips (Version 0.3.0)
2025
wCorr : Weighted Correlations (Version 1.9.8)
2016
walker
Coefficients : (Version )
0
warbleR : Streamline Bioacoustic Analysis (Version 1.1.37)
2015
waspr : Wasserstein Barycenters of Subset Posteriors (Version 1.0.1)
2020
watson : Fitting and Simulating Mixtures of Watson Distributions (Version 1.0.0)
2022
wav : Read and Write WAV Files (Version 0.1.1)
2022
wbsd : Wild Bootstrap Size Diagnostics (Version 1.0.0)
2020
wbsts : Multiple Change-Point Detection for Nonstationary Time Series (Version 2.1)
2015
wdm : Weighted Dependence Measures (Version 0.2.6)
2018
webreadr : Tools for Reading Formatted Access Log Files (Version 0.4.0)
2015
wehoop : Access Women's Basketball Play by Play Data (Version 2.1.0)
2021
weibulltools : Statistical Methods for Life Data Analysis (Version 2.1.0)
2018
whoa : Evaluation of Genotyping Error in Genotype-by-Sequencing Data (Version 0.0.2)
2019
winputall : Variable Input Allocation Among Crops (Version 1.0.1)
2024
womblR : Spatiotemporal Boundary Detection Model for Areal Unit Data (Version 1.0.6)
2017
word2vec : Distributed Representations of Words (Version 0.4.1)
2020
wordcloud : Word Clouds (Version 2.6)
2011
wordspace : Distributional Semantic Models in R (Version 0.2-9)
2016
wowa : Weighted Ordered Weighted Average (Version 1.0.2)
2021
wrMisc : Analyze Experimental High-Throughput (Omics) Data (Version 1.15.4)
2019
wrswoR : Weighted Random Sampling without Replacement (Version 1.2.0)
2016
wsrf : Weighted Subspace Random Forest for Classification (Version 1.7.31)
2014
wv : Wavelet Variance (Version 0.1.3)
2019
xdcclarge : Estimating a (c)DCC-GARCH Model in Large Dimensions (Version 0.1.0)
2018
xmlwriter : Fast and Elegant XML Generation (Version 0.1.1)
2024
xplorerr : Tools for Interactive Data Exploration (Version 0.2.0)
2019
xrnet : Hierarchical Regularized Regression (Version 1.0.1)
2020
xslt : Extensible Style-Sheet Language Transformations (Version 1.5.1)
2017
xutils : Utility Functions of Fangzhou Xie (Version 0.0.2)
2021
ycevo : Nonparametric Estimation of the Yield Curve Evolution (Version 0.3.0)
2022
yuima : The YUIMA Project Package for SDEs (Version 1.15.34)
2014
zcurve : An Implementation of Z-Curves (Version 2.4.6)
2020
zebu : Local Association Measures (Version 0.2.2.0)
2016
zic : Bayesian Inference for Zero-Inflated Count Models (Version 0.9.1)
2009
zlib : Compression and Decompression (Version 1.0.3)
2023
zoid : Bayesian Zero-and-One Inflated Dirichlet Regression Modelling (Version 1.3.1)
2021
ztpln : Zero-Truncated Poisson Lognormal Distribution (Version 0.1.3)
2020
Showing 1-3729 of 3729
RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN).
Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.
